pyvpmr 231124__tar.gz

pyvpmr-231124/.clang-format

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+---
+Language: Cpp
+BasedOnStyle: LLVM
+AccessModifierOffset: -4
+AlignOperands: false
+AllowShortBlocksOnASingleLine: true
+AllowShortIfStatementsOnASingleLine: true
+AllowShortLoopsOnASingleLine: true
+AlwaysBreakAfterDefinitionReturnType: false
+AlwaysBreakTemplateDeclarations: No
+BraceWrapping: 
+  AfterCaseLabel: false
+  AfterClass: false
+  AfterControlStatement: false
+  AfterEnum: false
+  AfterFunction: false
+  AfterNamespace: false
+  AfterStruct: false
+  AfterUnion: false
+  AfterExternBlock: false
+  BeforeCatch: true
+  BeforeElse: true
+  BeforeLambdaBody: false
+  BeforeWhile: true
+  SplitEmptyFunction: false
+  SplitEmptyRecord: false
+  SplitEmptyNamespace: false
+BreakBeforeBraces: Custom
+BreakConstructorInitializers: BeforeComma
+ColumnLimit: 0
+ConstructorInitializerAllOnOneLineOrOnePerLine: true
+IncludeCategories: 
+  - Regex: '^<.*'
+    Priority: 1
+  - Regex: '^".*'
+    Priority: 2
+  - Regex: '.*'
+    Priority: 3
+IncludeIsMainRegex: '([-_](test|unittest))?$'
+IndentWidth: 4
+MacroBlockBegin: ''
+MacroBlockEnd: ''
+NamespaceIndentation: All
+PointerAlignment: Left
+SpaceAfterTemplateKeyword: false
+SpaceBeforeParens: Never
+TabWidth: 4
+...

pyvpmr-231124/.github/.codecov.yml

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+coverage:
+  range: 80..90
+  round: up
+  precision: 4
+parsers:
+  gcov:
+    branch_detection:
+      conditional: no
+      loop: no
+      method: no
+      macro: no
+ignore:
+  - "src/BigInt.hpp"

pyvpmr-231124/.github/workflows/coverage.yml

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+name: Coverage
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+jobs:
+  ubuntu:
+    runs-on: ubuntu-22.04
+    timeout-minutes: 10
+    steps:
+      - name: Setup
+        run: |
+          sudo apt-get update && sudo apt-get install -y cmake git g++ libtbb-dev libmpfr-dev libgmp-dev libpython3-dev python3 python3-distutils
+      - name: Clone
+        uses: actions/checkout@v3
+      - name: Compile
+        run: |
+          git config --global --add safe.directory /__w/vpmr/vpmr
+          git submodule update --init --recursive
+          sed -i 's/3.24/3.13/g' CMakeLists.txt
+          mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Debug ..
+          make -j"$(nproc)"
+          ./vpmr -h
+          echo "exp(-t^2/2)" > k
+          ./vpmr -nc 5 -n 20 -d 100 -q 400 -e 1e-9 -k k -w -s
+          for SRC in `find . | egrep '\.o'`; do gcov -n $SRC > /dev/null; done
+          python3 -c "import pyvpmr;print(pyvpmr.vpmr())"
+      - name: Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: '3.10'
+      - name: Requirements
+        run: python -m pip install --upgrade wheel setuptools
+      - name: Build
+        run: pip install --verbose .
+      - name: Test
+        run: python3 test/test.py
+      - name: Upload
+        uses: codecov/codecov-action@v3
+        with:
+          gcov: true

pyvpmr-231124/.github/workflows/release.yml

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+name: Release
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+jobs:
+  debian:
+    runs-on: ubuntu-22.04
+    timeout-minutes: 10
+    container: debian:buster
+    steps:
+      - name: Setup
+        run: |
+          echo "VPMR_VERSION=$(date +''%y%m%d'')" >> $GITHUB_ENV
+          apt-get update && apt-get install -y cmake git g++ libtbb-dev libmpfr-dev libgmp-dev libpython3-dev python3 python3-distutils wget gtk-update-icon-cache
+      - name: Clone
+        uses: actions/checkout@v3
+      - name: Compile
+        run: |
+          git config --global --add safe.directory /__w/vpmr/vpmr
+          git submodule update --init --recursive
+          cd eigen && git apply ../patch_size.patch && cd ..
+          sed -i 's/3.24/3.13/g' CMakeLists.txt
+          mkdir build && cd build && cmake -DCMAKE_BUILD_TYPE=Release ..
+          make -j"$(nproc)"
+      - name: AppImage
+        run: |
+          echo "version: 1" >> AppImageBuilder.yml
+          echo "AppDir:" >> AppImageBuilder.yml
+          echo "  path: build/AppDir" >> AppImageBuilder.yml
+          echo "  app_info:" >> AppImageBuilder.yml
+          echo "    id: io.github.tlcfem.vpmr" >> AppImageBuilder.yml
+          echo "    name: vpmr" >> AppImageBuilder.yml
+          echo "    version: '${{ env.VPMR_VERSION }}'" >> AppImageBuilder.yml
+          echo "    icon: vpmr" >> AppImageBuilder.yml
+          echo "    exec: usr/bin/vpmr" >> AppImageBuilder.yml
+          echo "    exec_args: \$@" >> AppImageBuilder.yml
+          echo "  files:" >> AppImageBuilder.yml
+          echo "    include:" >> AppImageBuilder.yml
+          echo "    - lib64/ld-linux-x86-64.so.2" >> AppImageBuilder.yml
+          echo "    exclude:" >> AppImageBuilder.yml
+          echo "    - usr/share/man" >> AppImageBuilder.yml
+          echo "    - usr/share/doc/*/README.*" >> AppImageBuilder.yml
+          echo "    - usr/share/doc/*/changelog.*" >> AppImageBuilder.yml
+          echo "    - usr/share/doc/*/NEWS.*" >> AppImageBuilder.yml
+          echo "    - usr/share/doc/*/TODO.*" >> AppImageBuilder.yml
+          echo "  test:" >> AppImageBuilder.yml
+          echo "    fedora-30:" >> AppImageBuilder.yml
+          echo "      image: appimagecrafters/tests-env:fedora-30" >> AppImageBuilder.yml
+          echo "      command: ./AppRun -h" >> AppImageBuilder.yml
+          echo "    debian-stable:" >> AppImageBuilder.yml
+          echo "      image: appimagecrafters/tests-env:debian-stable" >> AppImageBuilder.yml
+          echo "      command: ./AppRun -h" >> AppImageBuilder.yml
+          echo "    archlinux-latest:" >> AppImageBuilder.yml
+          echo "      image: appimagecrafters/tests-env:archlinux-latest" >> AppImageBuilder.yml
+          echo "      command: ./AppRun -h" >> AppImageBuilder.yml
+          echo "    centos-7:" >> AppImageBuilder.yml
+          echo "      image: appimagecrafters/tests-env:centos-7" >> AppImageBuilder.yml
+          echo "      command: ./AppRun -h" >> AppImageBuilder.yml
+          echo "    ubuntu-xenial:" >> AppImageBuilder.yml
+          echo "      image: appimagecrafters/tests-env:ubuntu-xenial" >> AppImageBuilder.yml
+          echo "      command: ./AppRun -h" >> AppImageBuilder.yml
+          echo "AppImage:" >> AppImageBuilder.yml
+          echo "  arch: x86_64" >> AppImageBuilder.yml
+          echo "  update-information: guess" >> AppImageBuilder.yml
+          cat AppImageBuilder.yml
+      - name: Package
+        run: |
+          wget -q https://github.com/linuxdeploy/linuxdeploy/releases/download/1-alpha-20220822-1/linuxdeploy-x86_64.AppImage
+          chmod +x linuxdeploy-x86_64.AppImage
+          wget -q https://github.com/AppImageCrafters/appimage-builder/releases/download/v1.1.0/appimage-builder-1.1.0-x86_64.AppImage
+          chmod +x appimage-builder-1.1.0-x86_64.AppImage
+
+          ./linuxdeploy-x86_64.AppImage --appimage-extract-and-run --appdir AppDir --executable build/vpmr -i resource/vpmr.svg
+          ./appimage-builder-1.1.0-x86_64.AppImage --appimage-extract-and-run --recipe AppImageBuilder.yml --skip-tests
+          
+          chmod +x vpmr-${{ env.VPMR_VERSION }}-x86_64.AppImage
+          ./vpmr-${{ env.VPMR_VERSION }}-x86_64.AppImage --appimage-extract-and-run -h
+      - name: Release
+        if: contains(github.event.head_commit.message, '[publish]')
+        uses: svenstaro/upload-release-action@v2
+        with:
+          repo_token: ${{ secrets.GITHUB_TOKEN }}
+          file: vpmr-${{ env.VPMR_VERSION }}-x86_64.AppImage
+          asset_name: vpmr-${{ env.VPMR_VERSION }}-x86_64.AppImage
+          tag: v${{ env.VPMR_VERSION }}
+          prerelease: false
+          overwrite: true

pyvpmr-231124/.github/workflows/wheels.yml

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+name: Wheels
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+jobs:
+  build_sdist:
+    name: Build
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup
+        run: |
+          git submodule update --init --recursive
+          cd eigen && git apply ../patch_size.patch && cd ..
+      - name: Build
+        run: pipx run build --sdist
+      - name: Check
+        run: pipx run twine check dist/*
+      - uses: actions/upload-artifact@v3
+        with:
+          name: pyvpmr
+          path: dist/*.tar.gz
+  build_wheels:
+    name: Wheels
+    runs-on: ${{ matrix.os }}
+    strategy:
+      matrix:
+        os: [ ubuntu-latest ]
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup
+        run: |
+          git submodule update --init --recursive
+          cd eigen && git apply ../patch_size.patch && cd ..
+      - name: CI Build Wheel
+        uses: pypa/cibuildwheel@v2.16
+        env:
+          CIBW_PLATFORM: linux
+      - name: Upload
+        uses: actions/upload-artifact@v3
+        with:
+          name: pyvpmr
+          path: wheelhouse/*.whl
+  upload_all:
+    name: Upload
+    needs: [ build_wheels, build_sdist ]
+    runs-on: ubuntu-latest
+    if: contains(github.event.head_commit.message, '[publish]')
+    steps:
+      - uses: actions/setup-python@v4
+        with:
+          python-version: "3.10"
+      - uses: actions/download-artifact@v3
+        with:
+          name: pyvpmr
+          path: dist
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          user: __token__
+          password: ${{ secrets.PYPI }}

pyvpmr-231124/.github/workflows/windows.yml

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+name: Windows
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+jobs:
+  windows:
+    runs-on: windows-2022
+    timeout-minutes: 120
+    steps:
+      - uses: msys2/setup-msys2@v2
+        with:
+          msystem: mingw64
+          update: true
+          install: git mingw-w64-x86_64-cmake mingw-w64-x86_64-tbb mingw-w64-x86_64-gcc mingw-w64-x86_64-ninja mingw-w64-x86_64-gmp mingw-w64-x86_64-mpfr mingw-w64-x86_64-7zip
+      - name: Clone
+        uses: actions/checkout@v3
+      - name: Version
+        run: |
+          echo ("VPMR_VERSION="+(get-date -format "yyMMdd")) >> $env:GITHUB_ENV
+      - name: Compile
+        shell: msys2 {0}
+        run: |
+          git submodule update --init --recursive
+          cd eigen && git apply --ignore-space-change --ignore-whitespace ../patch_size.patch && cd ..
+          sed -i 's/3.24/3.13/g' CMakeLists.txt
+          mkdir build && cd build
+          cmake -G Ninja -DCMAKE_BUILD_TYPE=Release ..
+          cmake --build .
+          mkdir release
+          ldd vpmr.exe
+          cp vpmr.exe release
+          cmake -G Ninja -DCMAKE_BUILD_TYPE=RelWithDebInfo ..
+          cmake --build .
+          cp vpmr.exe release/vpmr-dbg.exe
+          cp /mingw64/bin/libgcc_s_seh-1.dll release
+          cp /mingw64/bin/libstdc++-6.dll release
+          cp /mingw64/bin/libwinpthread-1.dll release
+          cp /mingw64/bin/libgmp-10.dll release
+          cp /mingw64/bin/libmpfr-6.dll release
+          cp /mingw64/bin/libtbb12.dll release
+          cd release
+          7z a ../../vpmr-${{ env.VPMR_VERSION }}-win.7z *
+      - name: Release
+        if: contains(github.event.head_commit.message, '[publish]')
+        uses: svenstaro/upload-release-action@v2
+        with:
+          repo_token: ${{ secrets.GITHUB_TOKEN }}
+          file: vpmr-${{ env.VPMR_VERSION }}-win.7z
+          asset_name: vpmr-${{ env.VPMR_VERSION }}-win.7z
+          tag: v${{ env.VPMR_VERSION }}
+          prerelease: false
+          overwrite: true

pyvpmr-231124/.gitignore

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+*vpmr*.so
+*.egg-info
+.cache
+.idea/
+.vscode/
+build/
+cmake-build-*/
+plotter/venv
+wheelhouse

pyvpmr-231124/.gitmodules

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+[submodule "eigen.git"]
+	path = eigen
+	url = https://gitlab.com/libeigen/eigen.git
+[submodule "mpreal.git"]
+	path = mpreal
+	url = https://github.com/advanpix/mpreal.git
+[submodule "exprtk.git"]
+	path = exprtk
+	url = https://github.com/ArashPartow/exprtk.git
+[submodule "exprtk-custom-types.git"]
+	path = exprtk-custom-types
+	url = https://github.com/ArashPartow/exprtk-custom-types.git
+[submodule "pybind11.git"]
+	path = pybind11
+	url = https://github.com/pybind/pybind11.git

pyvpmr-231124/CMakeLists.txt

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+cmake_minimum_required(VERSION 3.24)
+project(vpmr)
+
+set(CMAKE_CXX_STANDARD 17)
+set(CMAKE_CXX_FLAGS_RELWITHDEBINFO "-O3 -g -DNDEBUG")
+
+include_directories(eigen)
+include_directories(eigen/unsupported)
+include_directories(mpreal)
+include_directories(exprtk)
+include_directories(exprtk-custom-types)
+include_directories(pybind11/include)
+
+if (MINGW)
+    find_package(TBB REQUIRED)
+    link_libraries(TBB::tbb)
+else ()
+    link_libraries(tbb)
+endif ()
+
+link_libraries(gmp mpfr)
+
+if (CMAKE_BUILD_TYPE STREQUAL "Debug")
+    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -g -O0 -fprofile-arcs -ftest-coverage")
+elseif (UNIX)
+    set(CMAKE_CXX_FLAGS "${CMAKE_CXX_FLAGS} -flto=auto")
+endif ()
+
+include(CheckIncludeFile)
+check_include_file("Windows.h" HAVE_WINDOWS_H)
+if (HAVE_WINDOWS_H)
+    add_definitions(-DHAVE_WINDOWS_H)
+endif ()
+
+add_executable(vpmr src/VPMR.cpp)
+
+find_package(Python3 REQUIRED COMPONENTS Development Interpreter)
+message(STATUS "Python3: ${Python3_VERSION}")
+include_directories(${Python3_INCLUDE_DIRS})
+add_subdirectory(pybind11)
+
+pybind11_add_module(pyvpmr src/VPMR.cpp)
+target_compile_definitions(pyvpmr PRIVATE PYVPMR)
+
+if (CMAKE_CXX_COMPILER_ID STREQUAL "GNU")
+    target_sources(${PROJECT_NAME} PRIVATE resource/vpmr.rc)
+    if (MINGW)
+        target_compile_options(${PROJECT_NAME} PRIVATE "-Wa,-mbig-obj")
+        target_compile_options(pyvpmr PRIVATE "-Wa,-mbig-obj")
+    endif ()
+endif ()