pyuvdata 3.2.6__tar.gz → 3.2.8__tar.gz

pyuvdata-3.2.8/.github/dependabot.yml

@@ -0,0 +1,8 @@
+version: 2
+updates:
+  - package-ecosystem: github-actions
+    directory: "/"
+    schedule:
+      interval: monthly
+    cooldown:
+      default-days: 14

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/.github/workflows/macosx_windows_ci.yaml

@@ -12,11 +12,16 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
 
+permissions: {}
+
 jobs:
   tests:
     name: Run Tests
     env:
       PYTHON: ${{ matrix.python-version }}
+      # Keep the test data in the workspace rather than the per-OS default cache
+      # location, so it can be cached with a single path on every runner.
+      PYUVDATA_DATA_DIR: ${{ github.workspace }}/pooch_cache
     runs-on: ${{ matrix.os }}
     defaults:
      run:
@@ -33,12 +38,13 @@ jobs:
           - env_name: pyuvdata_tests_mac_arm
             os: macos-latest
     steps:
-      - uses: actions/checkout@main
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           fetch-depth: 0
+          persist-credentials: false
 
       - name: Setup Miniforge
-        uses: conda-incubator/setup-miniconda@v3
+        uses: conda-incubator/setup-miniconda@8ee1f361103df19b6f8c8655fd3967a8ecb162d5 # v4.0.1
         with:
           miniforge-version: latest
           python-version: ${{ matrix.python-version }}
@@ -56,6 +62,16 @@ jobs:
             exit 1;
           fi
 
+      - name: Restore cached test data
+        uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0
+        with:
+          path: pooch_cache
+          key: pooch-${{ runner.os }}-${{ hashFiles('src/pyuvdata/datasets.py') }}
+
+      - name: Download any test data not already cached
+        run: |
+          python ci/prefetch_test_data.py "$PYUVDATA_DATA_DIR"
+
       - name: Install
         run: |
           CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install .
@@ -64,8 +80,9 @@ jobs:
         run: |
           python -m pytest -n auto --dist=loadfile --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:./coverage.xml
 
-      - uses: codecov/codecov-action@v5
+      - uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
         if: success()
         with:
           token: ${{secrets.CODECOV_TOKEN}} #required
           files: ./coverage.xml #optional
+          fail_ci_if_error: true

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/.github/workflows/numba_test.yaml

@@ -12,17 +12,20 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
 
+permissions: {}
+
 jobs:
   numba_test:
     name: Numba Utils Tests
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@main
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           fetch-depth: 0
+          persist-credentials: false
 
       - name: Setup Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version-file: pyproject.toml
 
@@ -37,10 +40,11 @@ jobs:
 
       - name: Run Tests
         run: |
-          NUMBA_DISABLE_JIT=1 pytest tests/utils/test_bls_numba.py -n auto --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:coverage.xml
+          NUMBA_DISABLE_JIT=1 pytest tests/utils/test_bls_numba.py tests/utils/test_gain_interpolate.py tests/utils/test_averaging.py -n auto --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:coverage.xml
 
-      - uses: codecov/codecov-action@v5
+      - uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
         if: success()
         with:
           token: ${{secrets.CODECOV_TOKEN}} #required
           files: ./coverage.xml #optional
+          fail_ci_if_error: true

pyuvdata-3.2.8/.github/workflows/publish-to-test-pypi.yaml

@@ -0,0 +1,111 @@
+name: Publish Python distributions to PyPI and TestPyPI
+
+on:
+  release:
+    types: [published]
+  pull_request:
+    branches: main
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+permissions: {}
+
+jobs:
+  build_wheels:
+    name: Build wheel for ${{ matrix.python }}-${{ matrix.buildplat[1] }} ${{ matrix.buildplat[2] }}
+    runs-on: ${{ matrix.buildplat[0] }}
+    env:
+      PYUVDATA_DATA_DIR: ${{ github.workspace }}/pooch_cache
+    strategy:
+      fail-fast: false
+      matrix:
+        buildplat:
+          - [ubuntu-latest, manylinux, x86_64]
+          - [macos-15-intel, macosx, x86_64]
+          - [macos-latest, macosx, arm64]
+          - [windows-latest, win, AMD64]
+        python: ["cp311", "cp312", "cp313", "cp314"]
+        exclude:
+          # exclude intel macs on python 3.14 because there's no compatible numba wheel
+          - buildplat: [macos-15-intel, macosx, x86_64]
+            python: "cp314"
+    steps:
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        with:
+          fetch-depth: 0
+          persist-credentials: false
+
+      # Only for the prefetch step below
+      - name: Setup Python
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
+        with:
+          python-version-file: pyproject.toml
+
+      # Suppress the cache-poisoning audit for this step, since the only way to fix it
+      # is to allow for lookup-only , which would stop the cache from being restored.
+      # Known issue: https://github.com/zizmorcore/zizmor/issues/2071 -- the ignore can
+      # get removed once the issue is implemented in zizmor.
+      - name: Restore cached test data
+        if: github.event_name != 'release'
+        uses: actions/cache@55cc8345863c7cc4c66a329aec7e433d2d1c52a9 # v6.1.0 # zizmor: ignore[cache-poisoning]
+        with:
+          path: pooch_cache
+          key: pooch-${{ runner.os }}-${{ hashFiles('src/pyuvdata/datasets.py') }}
+
+      - name: Download any test data not already cached
+        shell: bash
+        run: |
+          python -m pip install pooch pyyaml
+          python ci/prefetch_test_data.py "$PYUVDATA_DATA_DIR"
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@1828c10ab37f080699c7b81cea34097c684a7074 # v4.2.0
+        env:
+          CIBW_BUILD: ${{ matrix.python }}-${{ matrix.buildplat[1] }}*
+          CIBW_ARCHS: ${{ matrix.buildplat[2] }}
+          CIBW_TEST_REQUIRES: "-r ci/test_requirements.txt"
+          CIBW_TEST_COMMAND: "pytest {project}/tests -n auto"
+          CIBW_ENVIRONMENT: PYUVDATA_DATA_DIR='${{ env.PYUVDATA_DATA_DIR }}'
+          CIBW_ENVIRONMENT_LINUX: PYUVDATA_DATA_DIR=/project/pooch_cache
+
+      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: cibw-wheels-${{ matrix.python }}-${{ matrix.buildplat[1] }}-${{ matrix.buildplat[2] }}
+          path: ./wheelhouse/*.whl
+
+  make_sdist:
+    name: Make SDist
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
+        with:
+          fetch-depth: 0
+          persist-credentials: false
+
+      - name: Build SDist
+        run: pipx run build --sdist
+
+      - uses: actions/upload-artifact@043fb46d1a93c77aae656e7c1c64a875d1fc6a0a # v7.0.1
+        with:
+          name: cibw-sdist
+          path: dist/*.tar.gz
+
+  upload_all:
+    needs: [build_wheels, make_sdist]
+    runs-on: ubuntu-latest
+    permissions:
+      # IMPORTANT: this permission is mandatory for Trusted Publishing
+      id-token: write
+    steps:
+      - uses: actions/download-artifact@3e5f45b2cfb9172054b4087a40e8e0b5a5461e7c # v8.0.1
+        with:
+          # unpacks all CIBW artifacts into dist/
+          pattern: cibw-*
+          path: dist
+          merge-multiple: true
+
+      - name: Upload to PyPI
+        if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@dc37677b2e1c63e2034f94d8a5b11f265b73ba33 # v1.14.2

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/.github/workflows/warning_test.yaml

@@ -12,6 +12,8 @@ concurrency:
   group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
   cancel-in-progress: true
 
+permissions: {}
+
 jobs:
   warning_test:
     name: Warning Test
@@ -31,12 +33,13 @@ jobs:
             pip-options: "test"
             coverage: false
     steps:
-      - uses: actions/checkout@main
+      - uses: actions/checkout@3d3c42e5aac5ba805825da76410c181273ba90b1 # v7.0.1
         with:
           fetch-depth: 0
+          persist-credentials: false
 
       - name: Setup Python
-        uses: actions/setup-python@v5
+        uses: actions/setup-python@5fda3b95a4ea91299a34e894583c3862153e4b97 # v7.0.0
         with:
           python-version: ${{ matrix.python-version }}
 
@@ -51,10 +54,11 @@ jobs:
 
       - name: Run Tests
         run: |
-          pytest -W error -n auto ${{ env.PYTEST_OPTIONS }}
+          pytest -W error -n auto ${PYTEST_OPTIONS}
 
-      - uses: codecov/codecov-action@v5
-        if: success()
+      - uses: codecov/codecov-action@fb8b3582c8e4def4969c97caa2f19720cb33a72f # v7.0.0
+        if: matrix.coverage == true && success()
         with:
           token: ${{secrets.CODECOV_TOKEN}} #required
           files: ./coverage.xml #optional
+          fail_ci_if_error: true

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/.gitignore

@@ -84,3 +84,6 @@ src/pyuvdata/uvdata/corr_fits.c
 src/pyuvdata/uvdata/src/miriad_wrap.cpp
 
 .vscode/
+
+# test data cache populated by ci/prefetch_test_data.py
+pooch_cache/

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/.pre-commit-config.yaml

@@ -17,7 +17,7 @@ repos:
           args: ['--fix=no']
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.15.9
+    rev: v0.16.7
     hooks:
       - id: ruff
       - id: ruff-format
@@ -28,3 +28,8 @@ repos:
       - id: bandit
         args: ["-c", "pyproject.toml", "--recursive"]
         additional_dependencies: ["bandit[toml]"]
+
+  - repo: https://github.com/zizmorcore/zizmor-pre-commit
+    rev: v1.30.1
+    hooks:
+    - id: zizmor

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/CHANGELOG.md

@@ -3,6 +3,108 @@ All notable changes to this project will be documented in this file.
 
 ## [Unreleased]
 
+## [3.2.8] - 2025-09-18
+
+### Fixed
+- A bug in `UVData.read_ms` where visibility units could not be parsed when stored in
+a MeasurementSet as a singleton entry/list.
+- A bug in `UVData.write_ms` which caused `corrected_data` and `model_data` not to be
+reordered in the same way that, e.g., `UVData.data_array` was on write.
+- A bug in `UVData.write_ms` which caused `corrected_data` and `model_data` not to be
+conjugated (and inconsistent with `UVData.data_array`) when a mixture of baseline
+conjugation schemes was present.
+- A bug in `UVData.read_ms_cal` and `UVData.write_ms_cal` where gains tables where not
+being conjugated correctly.
+- A bug where the Jones array stored in calibration tables generated ny `UVCal.write_ms_cal`
+could be incorrectly ordered.
+- A bug where `utils.gain_interpolate.time_interp_cal` was not unwrapping phase gains
+along the time axis correctly (mistakenly was using the Jones axis instead).
+- A bug where calling `UVData.conjugate_bls` was not reordering `nsample_array` and
+`flag_array` cross-polarization entries.
+- A bug in `UVData.phase` where near-field phasing ignored `select_mask` and applied the
+near-field correction to every record, overwriting the w-coordinate and rotating the
+visibilities of records belonging to other phase centers.
+
+### Changed
+- `UVData.read_ms` and `UVData.write_ms` now always flip conjugation scheme on read and
+write for non-pyuvdata generated MeasurementSets (it was previously believed that when
+ant1 > ant2, the conjugation scheme may be flipped, but that was a misreading of CASA's
+codebase).
+
+## [3.2.7] - 2025-08-20
+
+### Added
+- Support for reading Miriad bandpass, gains, delays, and leakage calibration tables
+into `UVCal` via `UVCal.read_miriad_cal`.
+- A new utility function `utils.averaging.mapped_average`, which performs a weighted
+average of an array along a single axis using an arbitrary map of input to output
+positions.
+- A `chan_map` keyword to `UVData.frequency_average`, which allows for mapping input to
+output channels, allowing for more sophisiticated averaging schemes (e.g., unevenly
+sized bins).
+- The keywords `weight_by_nsample` and `sum_nsample` to `UVData.frequency_average`,
+which control whether channels are weighted by `nsample_array` in the average, and
+whether `nsample_array` records the summed or the fractional number of samples.
+- A new method `UVCal.interpolate_in_time`, which allows for UVCal calibration tables
+to be "upsampled" in time.
+- A new module (`gain_interpolate.py`) for performing time-based interpolation of
+calibration solutions.
+- A new option for `uvcalibrate`, called `apply_to_weights`, which allows for the values
+in `UVData.nsample_array` to be adjusted in a manner consistent with the expected
+inverse variance (e.g., if the visibilities are scaled up by a factor of 2 in amplitude,
+`nsample_array` is scaled down by a factor of 4).
+- The options `interpolate` and `interp_kwargs` were added to `uvcalibrate`, which allow
+the solutions to be interpolated onto the times of the data being calibrated (via
+`UVCal.interpolate_in_time`), rather than requiring the two to already match.
+- The options `uvd_select_kwargs` and `uvc_select_kwargs` were added to `uvcalibrate`,
+which allow the calibration to be applied to a subset of the data, and with a subset of
+the solutions, respectively. An additional option, `flag_unselected`, allows users to
+specify whether to flag unselected records in the `UVData` object.
+- A new function `utils.tools.mask_slicify`, which converts a boolean mask into a slice
+if possible, otherwise into an array of index positions.
+- Support for two new types of beams in UVBeam and AnalyticBeam: feed_aligned_response
+and feed_aligned_projection beams which result from an E-field beam decomposition
+used in some analysis codes.
+- Added more options for controlling labels on beam plots.
+- Support for MWA Average Embedded Element beams in UVBeam.
+
+### Changed
+- Moved the miriad telescope, antenna and frequency axis handling on to the
+`aipy_extracts.UV` object so that it is shared between the `UVData` and `UVCal` readers,
+adding `UV.get_telescope`, `UV.get_freq_axis` and `UV.get_data_antennas` methods.
+- Changed how `UVCal.read_ms_cal` groups together calibration solutions based on time.
+Previously solution timestamps needed to be within the default tolerance for
+`UVCal.time_array` (1 millisecond), but testing suggests that CASA-based processes
+have some "slop" in them on the order of tens of milliseconds, and therefore the
+time tolerance was increased to 250 ms. This can be controlled through the keyword
+`time_atol` (specified in seconds).
+- Refactored `UVData.frequency_average` and `UVData.downsample_in_time` to use the new
+numba-based `utils.averaging.mapped_average` routine, which is significantly faster and
+uses less memory (substantially so for `UVData.frequency_average`).
+- `uvcalibrate` now records more detail in `UVData.history`, including which records
+were calibrated when a selection was used, whether the rest were flagged, and how the
+solutions were interpolated if `interpolate` was set.
+- Updating code to no longer set shapes directly on ndarrays (deprecated in NumPy 2.5)
+- Require lunarsky>1.0 to drop spiceypy requirement
+
+### Fixed
+- A bug where `UVData.frequency_average` would either raise an IndexError or zero out
+fully-flagged channels in all spectral windows but the first, rather than recording
+the average of the flagged values.
+- A bug where `UVCal.pol_convention` was not being properly set when reading in
+FHD calibration solutions due to a typo.
+- A bug where `UVData.scan_number_array` was not properly updated when objects
+were resampled in time.
+- A bug where `UVData.scan_number_array` was not properly updated in the
+`UVData.inflate_by_redundancy` method.
+- A bug where `UVData.scan_number_array` was not properly updated when objects
+were added or concatenated. The fix involved a major refactoring that should prevent
+similar bugs in the future by using UVParameter forms to detect which attributes
+to update on UVData objects.
+
+### Removed
+- Spiceypy error catching in tests
+
 ## [3.2.6] - 2025-03-13
 
 ### Added
@@ -34,9 +136,9 @@ better default colormaps for phase.
 fringe-stopped data.
 
 ### Fixed
-- A backwards compatibiilty issue with feed arrays in old beamfits files which
+- A backwards compatibility issue with feed arrays in old beamfits files which
 could specify feeds as "e" or "n".
-- Compatiblity with numpy>=2.3
+- Compatibility with numpy>=2.3
 
 ## [3.2.4] - 2025-09-15
 
@@ -686,7 +788,7 @@ to allow the function name to be passed into the methods, with sensible defaulti
 `Nspws` (which used to only be required for baseline and antenna types). These
 parameters all already exist on UVData and UVCal objects and UVFlag objects initialized
 from them will inherit them. UVFlag objects will also inherit these parameters when
-they are converted between types using UVData and UVCalobjects.
+they are converted between types using UVData and UVCal objects.
 - The `UVFlag.set_telescope_params` method, similar to the ones on UVData and UVCal,
 to set several of these new parameters.
 
@@ -1150,7 +1252,7 @@ taken at 2 seconds.
 - Added handling for `object_name` and `extra_keywords` to `sum_vis` and `diff_vis` methods and added the `override_params` option to override other parameters.
 
 ### Changed
-- Changed to use Astropy sites for telescope locations when avaliable. This results in a small change for our known position for the MWA.
+- Changed to use Astropy sites for telescope locations when available. This results in a small change for our known position for the MWA.
 - Modified `UVData.read` to do faster concatenation of files, changed the interface to `UVData.fast_concat` to allow lists of `UVData` objects to be passed in.
 
 ### Fixed
@@ -1175,7 +1277,7 @@ taken at 2 seconds.
 
 ### Changed
 - When `flex_spw=True`, the `channel_width` attribute of UVData is expected to be an array of type=float and shape=(`Nfreqs`,). Individual channels are allowed to have different channel widths.
-- Changed `freq_array` to be of shape (1, `Nfreqs`) (formerley (`Nspws`, `Nfreqs`)).
+- Changed `freq_array` to be of shape (1, `Nfreqs`) (formerly (`Nspws`, `Nfreqs`)).
 - Changed  `data_array`, `flag_array`, `nsample_array` to be of shape (`Nblts`, 1, `Nfreqs`, `Npols`) (formerly (`Nblts`, `Nspws`, `Nfreqs`, `Npols`)).
 - Changed UVH5 metadata byte conversion method from tobytes() to bytes()
 
@@ -1276,7 +1378,7 @@ controlled by the `method` keyword.
 
 ### Removed
 - Previously deprecated code marked for removal in version > 1.5:
- - reading multiple files with file format specific read functions (e.g.  read_mirad). Multi-file reads can only be performed with `uvdata.read`
+ - reading multiple files with file format specific read functions (e.g.  read_miriad). Multi-file reads can only be performed with `uvdata.read`
  - `read_metadata` keyword in various specific read functions (e.g. `read_miriad`)
  - `metadata_only` keyword in `select` and `get_redundancies`
  - `uvdata.miriad.read_miriad_metadata`
@@ -1315,7 +1417,7 @@ controlled by the `method` keyword.
 - The `phase_center` and `phase_data` keywords to `read_mwa_corr_fits` in favor of `phase_to_pointing_center` and the `phase_center_radec` keyword in the generic `read` method.
 - Support for reading only the header (not all the metadata) of uvfits files.
 - The `read_uvfits_metadata` and `read_uvfits_data` methods on the UVFITS object.
-- The `read_miriad_metadata` method on the Mirad object.
+- The `read_miriad_metadata` method on the Miriad object.
 
 ## [1.4.2] - 2019-10-15
 
@@ -1402,7 +1504,7 @@ controlled by the `method` keyword.
 - Added preliminary `UVFlag` module from hera_qm to pyuvdata. Will eventually promote to `UVBase` object, but for now this is undocumented functionality.
 
 ### Deprecated
-- Defined 'east' and 'north' as the allowed 'x_orientation' values in UVData and UVCal, Backwards compatiblity support exists for 'E' and 'N' values
+- Defined 'east' and 'north' as the allowed 'x_orientation' values in UVData and UVCal, Backwards compatibility support exists for 'E' and 'N' values
 - `UVData.order_pols` method in favor of `UVData.reorder_pols`.
 
 ### Fixed
@@ -1504,7 +1606,7 @@ controlled by the `method` keyword.
 - new method to calculate uvws from antenna positions
 - `UVBeam.get_beam_area` and `UVBeam.get_beam_sq_area` functions to calculate beam integrals, including for pseudo-Stokes beams
 - beam interpolation methods, to any set of points and to healpix pixel centers
-- a script to renumber antennas for CASA compatiblity if there are fewer than 256 antennas but numbers higher than that
+- a script to renumber antennas for CASA compatibility if there are fewer than 256 antennas but numbers higher than that
 - memo describing the beam fits file format
 - method to peak normalize UVBeam objects
 - support for reading FHD calibrations into UVCal objects

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/PKG-INFO

@@ -1,18 +1,19 @@
 Metadata-Version: 2.4
 Name: pyuvdata
-Version: 3.2.6
+Version: 3.2.8
 Summary: A pythonic interface for radio astronomy interferometry data
 Author-email: Bryna Hazelton <brynah@phys.washington.edu>, Adam Beardsley <adam.beardsley@winona.edu>, Daniel Jacobs <daniel.c.jacobs@gmail.com>, Garrett Keating <garrett.keating@cfa.harvard.edu>, Nicholas Kern <nkern@mit.edu>, Matthew Kolopanis <matthew.kolopanis@gmail.com>, Adam Lanman <alanman@mit.edu>, Paul La Plante <paul.laplante@unlv.edu>, Steven Murray <murray.steveng@gmail.com>, Jonathan Pober <jonathan_pober@brown.edu>, Pyxie Star <pyxiestar@gmail.com>
 Maintainer-email: Bryna Hazelton <brynah@phys.washington.edu>, Matthew Kolopanis <matthew.kolopanis@gmail.com>, Garrett Keating <garrett.keating@cfa.harvard.edu>, Steven Murray <murray.steveng@gmail.com>
+License-Expression: BSD-2-Clause
 Project-URL: Repository, https://github.com/RadioAstronomySoftwareGroup/pyuvdata
 Project-URL: Documentation, https://pyuvdata.readthedocs.io
 Keywords: radio astronomy,interferometry
-Classifier: License :: OSI Approved :: BSD License
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Science/Research
-Classifier: Programming Language :: Python :: 3.11
-Classifier: Programming Language :: Python :: 3.12
-Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Operating System :: MacOS
+Classifier: Operating System :: Microsoft :: Windows
 Classifier: Topic :: Scientific/Engineering :: Astronomy
 Requires-Python: >=3.11
 Description-Content-Type: text/markdown
@@ -31,13 +32,12 @@ Provides-Extra: astroquery
 Requires-Dist: astroquery>=0.4.4; extra == "astroquery"
 Provides-Extra: casa
 Requires-Dist: python-casacore>=3.5.2; extra == "casa"
-Requires-Dist: numpy<2.0,>=1.23; extra == "casa"
 Provides-Extra: hdf5-compression
 Requires-Dist: hdf5plugin>=3.3.1; extra == "hdf5-compression"
 Provides-Extra: healpix
 Requires-Dist: astropy_healpix>=1.0.2; extra == "healpix"
 Provides-Extra: lunar
-Requires-Dist: lunarsky>=0.2.5; extra == "lunar"
+Requires-Dist: lunarsky>=1.0; extra == "lunar"
 Provides-Extra: novas
 Requires-Dist: novas; extra == "novas"
 Requires-Dist: novas_de405; extra == "novas"
@@ -45,15 +45,17 @@ Provides-Extra: plotting
 Requires-Dist: matplotlib>=3.7; extra == "plotting"
 Provides-Extra: all
 Requires-Dist: pyuvdata[astroquery,casa,hdf5_compression,healpix,lunar,novas,plotting]; extra == "all"
+Provides-Extra: datasets
+Requires-Dist: pooch>=1.8; extra == "datasets"
 Provides-Extra: tutorial
 Requires-Dist: pyuvdata[plotting]; extra == "tutorial"
-Requires-Dist: pooch>=1.8; extra == "tutorial"
+Requires-Dist: pyuvdata[datasets]; extra == "tutorial"
 Provides-Extra: test
+Requires-Dist: pyuvdata[datasets]; extra == "test"
 Requires-Dist: coverage; extra == "test"
 Requires-Dist: cython>=3.0; extra == "test"
-Requires-Dist: pooch>=1.8; extra == "test"
 Requires-Dist: pre-commit; extra == "test"
-Requires-Dist: pytest>=8.2.0; extra == "test"
+Requires-Dist: pytest<9.1,>=8.2.0; extra == "test"
 Requires-Dist: pytest-xdist; extra == "test"
 Requires-Dist: pytest-cases>=3.9.1; extra == "test"
 Requires-Dist: pytest-cov; extra == "test"
@@ -203,7 +205,7 @@ Please cite both of our JOSS papers:
 
 *Keating et al., (2025). pyuvdata v3: an interface for astronomical interferometric data sets in Python. Journal of Open Source Software, 10(109), 7482, https://doi.org/10.21105/joss.07482* [[ADS Link](https://ui.adsabs.harvard.edu/abs/2025JOSS...10.7482K)]
 
-*Hazelton et al, (2017), pyuvdata: an interface for astronomical interferometeric datasets in python, Journal of Open Source Software, 2(10), 140, doi:10.21105/joss.00140* [[ADS Link](https://ui.adsabs.harvard.edu/abs/2017JOSS....2..140H)]
+*Hazelton et al, (2017), pyuvdata: an interface for astronomical interferometric datasets in python, Journal of Open Source Software, 2(10), 140, doi:10.21105/joss.00140* [[ADS Link](https://ui.adsabs.harvard.edu/abs/2017JOSS....2..140H)]
 
 # Installation
 Simple installation via conda is available for users, developers should follow
@@ -236,7 +238,7 @@ Optional:
 * astropy-healpix >= 1.0.2 (for working with beams in HEALPix formats)
 * astroquery >= 0.4.4 (for enabling phasing to ephemeris objects using JPL-Horizons)
 * hdf5plugin >= 3.3.1 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
-* lunarsky >=0.2.5 (for working with simulated datasets for lunar telescopes)
+* lunarsky >=1.0 (for working with simulated datasets for lunar telescopes)
 * matplotlib>=3.7 (for making plots)
 * novas and novas_de405 (for using the NOVAS library for astrometry)
 * pooch >= 1.8 (for downloading test data for tutorials)

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/README.md

@@ -135,7 +135,7 @@ Please cite both of our JOSS papers:
 
 *Keating et al., (2025). pyuvdata v3: an interface for astronomical interferometric data sets in Python. Journal of Open Source Software, 10(109), 7482, https://doi.org/10.21105/joss.07482* [[ADS Link](https://ui.adsabs.harvard.edu/abs/2025JOSS...10.7482K)]
 
-*Hazelton et al, (2017), pyuvdata: an interface for astronomical interferometeric datasets in python, Journal of Open Source Software, 2(10), 140, doi:10.21105/joss.00140* [[ADS Link](https://ui.adsabs.harvard.edu/abs/2017JOSS....2..140H)]
+*Hazelton et al, (2017), pyuvdata: an interface for astronomical interferometric datasets in python, Journal of Open Source Software, 2(10), 140, doi:10.21105/joss.00140* [[ADS Link](https://ui.adsabs.harvard.edu/abs/2017JOSS....2..140H)]
 
 # Installation
 Simple installation via conda is available for users, developers should follow
@@ -168,7 +168,7 @@ Optional:
 * astropy-healpix >= 1.0.2 (for working with beams in HEALPix formats)
 * astroquery >= 0.4.4 (for enabling phasing to ephemeris objects using JPL-Horizons)
 * hdf5plugin >= 3.3.1 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
-* lunarsky >=0.2.5 (for working with simulated datasets for lunar telescopes)
+* lunarsky >=1.0 (for working with simulated datasets for lunar telescopes)
 * matplotlib>=3.7 (for making plots)
 * novas and novas_de405 (for using the NOVAS library for astrometry)
 * pooch >= 1.8 (for downloading test data for tutorials)

pyuvdata-3.2.8/ci/prefetch_test_data.py

@@ -0,0 +1,67 @@
+#!/usr/bin/env python
+"""
+Download the pyuvdata test data into a shared pooch cache.
+
+The wheel-building jobs run the test suite once per wheel, in an environment with a
+cold cache, so each one re-downloads the whole test dataset from github. Running this
+once on the runner and pointing the test environments at the result via the
+PYUVDATA_DATA_DIR environment variable turns those N downloads into one.
+
+Usage: python ci/prefetch_test_data.py <cache_dir>
+"""
+
+import importlib.util
+import os
+import sys
+import types
+from pathlib import Path
+
+REPO_ROOT = Path(__file__).resolve().parents[1]
+SRC = REPO_ROOT / "src" / "pyuvdata"
+
+
+def load_datasets_module():
+    """
+    Load pyuvdata.datasets without importing pyuvdata itself.
+
+    Importing the real package pulls in the compiled extensions, which have not been
+    built yet when this runs. datasets.py only needs DATA_PATH from the parent, so
+    stub out just enough of the package for it to import.
+    """
+    pkg = types.ModuleType("pyuvdata")
+    pkg.__path__ = [str(SRC)]
+    data_pkg = types.ModuleType("pyuvdata.data")
+    data_pkg.DATA_PATH = str(SRC / "data")
+    sys.modules["pyuvdata"] = pkg
+    sys.modules["pyuvdata.data"] = data_pkg
+
+    spec = importlib.util.spec_from_file_location(
+        "pyuvdata.datasets", SRC / "datasets.py"
+    )
+    module = importlib.util.module_from_spec(spec)
+    sys.modules["pyuvdata.datasets"] = module
+    spec.loader.exec_module(module)
+    return module
+
+
+def main():
+    """Fetch every dataset in the registry into the requested cache directory."""
+    if len(sys.argv) != 2:
+        sys.exit(f"usage: {sys.argv[0]} <cache_dir>")
+
+    # pooch reads this when the Pooch object is created, so it has to be set before
+    # datasets.py is executed.
+    cache_dir = Path(sys.argv[1]).resolve()
+    os.environ["PYUVDATA_DATA_DIR"] = str(cache_dir)
+
+    datasets = load_datasets_module()
+    print(f"Caching {len(datasets.fetch_dict)} datasets into {datasets.pup.abspath}")
+
+    for name in datasets.fetch_dict:
+        datasets.fetch_data(name)
+
+    print(f"Done. Cache is at {datasets.pup.abspath}")
+
+
+if __name__ == "__main__":
+    main()

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/ci/pyuvdata_min_deps_tests.yml

@@ -13,7 +13,7 @@ dependencies:
   - pip
   - pooch>=1.8
   - pyerfa>=2.0
-  - pytest>=8.2.0
+  - pytest>=8.2.0,<9.1
   - pytest-cases>=3.9.1
   - pytest-cov
   - pytest-xdist

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/ci/pyuvdata_min_versions_tests.yml

@@ -27,6 +27,6 @@ dependencies:
   - setuptools_scm==8.1
   - sybil==8.0
   - pip:
-    - lunarsky==0.2.5
+    - lunarsky==1.0.1.post2
     - novas
     - novas_de405

{pyuvdata-3.2.6 → pyuvdata-3.2.8}/ci/pyuvdata_tests.yml

@@ -16,7 +16,7 @@ dependencies:
   - pip
   - pooch>=1.8
   - pyerfa>=2.0.1.1
-  - pytest>=8.2.0
+  - pytest>=8.2.0,<9.1
   - pytest-cases>=3.9.1
   - pytest-cov
   - pytest-xdist
@@ -26,6 +26,6 @@ dependencies:
   - setuptools_scm>=8.1
   - sybil>=8.0
   - pip:
-    - lunarsky>=0.2.5
+    - lunarsky>=1.0
     - novas
     - novas_de405