pyuvdata 3.2.4__tar.gz → 3.2.5__tar.gz

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/.github/workflows/publish-to-test-pypi.yaml

@@ -19,7 +19,7 @@ jobs:
       matrix:
         buildplat:
           - [ubuntu-latest, manylinux, x86_64]
-          - [macos-13, macosx, x86_64]
+          - [macos-15-intel, macosx, x86_64]
           - [macos-latest, macosx, arm64]
           - [windows-latest, win, AMD64]
         python: ["cp311", "cp312", "cp313"]
@@ -29,7 +29,7 @@ jobs:
           fetch-depth: 0
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.23
+        uses: pypa/cibuildwheel@v3.3
         env:
           CIBW_BUILD: ${{ matrix.python }}-${{ matrix.buildplat[1] }}*
           CIBW_ARCHS: ${{ matrix.buildplat[2] }}

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/.pre-commit-config.yaml

@@ -17,13 +17,13 @@ repos:
           args: ['--fix=no']
 
   - repo: https://github.com/astral-sh/ruff-pre-commit
-    rev: v0.12.12
+    rev: v0.14.8
     hooks:
       - id: ruff
       - id: ruff-format
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.8.6
+    rev: 1.9.2
     hooks:
       - id: bandit
         args: ["-c", "pyproject.toml", "--recursive"]

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/CHANGELOG.md

@@ -3,6 +3,28 @@ All notable changes to this project will be documented in this file.
 
 ## [Unreleased]
 
+## [3.2.5] - 2025-12-11
+
+### Changed
+- Added a `UVData.flip_conjugation` method and more detail to the uvw check warning
+message to inform users when a conjugation flip might be needed.
+- When reading MWAX correlator files , `remove_coarse_band` now defaults to
+`False` if DERIPPLE is on. Otherwise it defaults to `True`.
+- If the user has set `remove_coarse_band=True` when DERIPPLE is on, a warning is
+raised, and no pfb shape is removed.
+
+### Added
+- Support for wide-band `UVCal` gain objects with `uvcalibrate`.
+- A colormap option to the UVBeam and AnalyticBeam `plot` methods, along with
+better default colormaps for phase.
+- A NotImplementedError to `mwa_corr_fits.py` that is thrown when trying to read
+fringe-stopped data.
+
+### Fixed
+- A backwards compatibiilty issue with feed arrays in old beamfits files which
+could specify feeds as "e" or "n".
+- Compatiblity with numpy>=2.3
+
 ## [3.2.4] - 2025-09-15
 
 ### Added

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyuvdata
-Version: 3.2.4
+Version: 3.2.5
 Summary: A pythonic interface for radio astronomy interferometry data
 Author-email: Bryna Hazelton <brynah@phys.washington.edu>, Adam Beardsley <adam.beardsley@winona.edu>, Daniel Jacobs <daniel.c.jacobs@gmail.com>, Garrett Keating <garrett.keating@cfa.harvard.edu>, Nicholas Kern <nkern@mit.edu>, Matthew Kolopanis <matthew.kolopanis@gmail.com>, Adam Lanman <alanman@mit.edu>, Paul La Plante <paul.laplante@unlv.edu>, Steven Murray <murray.steveng@gmail.com>, Jonathan Pober <jonathan_pober@brown.edu>, Pyxie Star <pyxiestar@gmail.com>
 Maintainer-email: Bryna Hazelton <brynah@phys.washington.edu>, Matthew Kolopanis <matthew.kolopanis@gmail.com>, Garrett Keating <garrett.keating@cfa.harvard.edu>, Steven Murray <murray.steveng@gmail.com>
@@ -20,7 +20,7 @@ License-File: LICENSE
 Requires-Dist: astropy>=6.0
 Requires-Dist: docstring-parser>=0.15
 Requires-Dist: h5py>=3.7
-Requires-Dist: numba>=0.57.0
+Requires-Dist: numba<0.63,>=0.57.0
 Requires-Dist: numpy>=1.23
 Requires-Dist: pyerfa>=2.0.1.1
 Requires-Dist: pyyaml>=5.4.1

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/ci/azure-piplines.yml

@@ -95,9 +95,8 @@ jobs:
   - bash: |
       micromamba info
       # need to add gxx and gcc to build novas and cython
-      # numba should be removed after next pyuvdata release (>3.2.1)
       # note different spelling of yaml extension
-      micromamba create --name=${ENV_NAME}  python=$PYTHON gxx gcc numba -f ../$(NAME)/ci/${ENV_NAME}.yaml -yq
+      micromamba create --name=${ENV_NAME}  python=$PYTHON gxx gcc -f ../$(NAME)/ci/${ENV_NAME}.yaml -yq
     displayName: configure conda environment
 
   - bash: |

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/pyproject.toml

@@ -34,7 +34,7 @@ dependencies = [
     "astropy>=6.0",
     "docstring-parser>=0.15",
     "h5py>=3.7",
-    "numba>=0.57.0",
+    "numba>=0.57.0,<0.63", # 0.63+ have no wheels for intel macs (conda builds are available)
     "numpy>=1.23",
     "pyerfa>=2.0.1.1",
     "pyyaml>=5.4.1",

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/src/pyuvdata/analytic_beam.py

@@ -646,6 +646,7 @@ class AnalyticBeam:
         beam_type: str,
         freq: float,
         complex_type: str = "real",
+        colormap: str | None = None,
         logcolor: bool | None = None,
         plt_kwargs: dict | None = None,
         norm_kwargs: dict | None = None,
@@ -666,6 +667,11 @@ class AnalyticBeam:
             What to plot for complex beams, options are: [real, imag, abs, phase].
             Defaults to "real" for complex beams. Ignored for real beams
             (i.e. power beams, same feed).
+        colormap : str, optional
+            Matplotlib colormap to use. Defaults to "twlight" if complex_type="phase"
+            and logcolor=False, otherwise it defaults to "viridis" if the data to be
+            plotted is positive definite (e.g. if complex_type="abs") and "PRGn"
+            otherwise.
         logcolor : bool, optional
             Option to use log scaling for the color. Defaults to True for power
             beams and False for E-field beams. Results in using
@@ -690,6 +696,7 @@ class AnalyticBeam:
             beam_type=beam_type,
             freq=freq,
             complex_type=complex_type,
+            colormap=colormap,
             logcolor=logcolor,
             plt_kwargs=plt_kwargs,
             norm_kwargs=norm_kwargs,

{pyuvdata-3.2.4 → pyuvdata-3.2.5}/src/pyuvdata/utils/array_collapse.py

@@ -14,6 +14,8 @@ def mean_collapse(
     """
     Collapse by averaging data.
 
+    Bools are cast to integers prior to calculations.
+
     This is similar to np.average, except it handles infs (by giving them
     zero weight) and zero weight axes (by forcing result to be inf with zero
     output weight).
@@ -34,6 +36,8 @@ def mean_collapse(
 
     """
     arr = deepcopy(arr)  # avoid changing outside
+    if isinstance(arr.item(0), bool):
+        arr = arr.astype(int)
     if weights is None:
         weights = np.ones_like(arr)
     else:
@@ -64,6 +68,8 @@ def absmean_collapse(
     """
     Collapse by averaging absolute value of data.
 
+    Bools are cast to integers prior to calculations.
+
     Parameters
     ----------
     arr : array
@@ -79,6 +85,9 @@ def absmean_collapse(
         whether to return the sum of the squares of the weights. Default is False.
 
     """
+    arr = deepcopy(arr)  # avoid changing outside
+    if isinstance(arr.item(0), bool):
+        arr = arr.astype(int)
     return mean_collapse(
         np.abs(arr),
         weights=weights,
@@ -94,6 +103,8 @@ def quadmean_collapse(
     """
     Collapse by averaging in quadrature.
 
+    Bools are cast to integers prior to calculations.
+
     Parameters
     ----------
     arr : array
@@ -109,6 +120,9 @@ def quadmean_collapse(
         whether to return the sum of the squares of the weights. Default is False.
 
     """
+    arr = deepcopy(arr)  # avoid changing outside
+    if isinstance(arr.item(0), bool):
+        arr = arr.astype(int)
     out = mean_collapse(
         np.abs(arr) ** 2,
         weights=weights,