pyuvdata 3.1.2__tar.gz → 3.2.0__tar.gz

pyuvdata-3.2.0/.github/PULL_REQUEST_TEMPLATE.md

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+<!--- Provide a general summary of your changes in the Title above -->
+
+## Description
+<!--- Describe your changes in detail -->
+
+## Motivation and Context
+<!--- Why is this change required? What problem does it solve? -->
+<!--- If it fixes an open issue, please link to the issue here. If this PR closes an issue, put the word 'closes' before the issue link to auto-close the issue when the PR is merged. -->
+
+## Types of changes
+<!--- What types of changes does your code introduce? Put an `x` in all the boxes that apply: -->
+- [ ] Bug fix (non-breaking change which fixes an issue)
+- [ ] New feature (non-breaking change which adds functionality)
+- [ ] Breaking change (fix or feature that would cause existing functionality to change)
+- [ ] Documentation change (documentation changes only)
+- [ ] Version change
+- [ ] Build or continuous integration change
+- [ ] Other
+
+
+## Checklist:
+<!--- You may remove the checklists that don't apply to your change type(s) or just leave them empty -->
+<!--- Go over all the following points, and replace the space with an `x` in all the boxes that apply. -->
+<!--- If you're unsure about any of these, don't hesitate to ask. We're here to help! -->
+- [ ] I have read the [contribution guide](https://github.com/RadioAstronomySoftwareGroup/pyuvdata/blob/main/.github/CONTRIBUTING.md).
+- [ ] My code follows the code style of this project.
+
+Bug fix checklist:
+- [ ] My fix includes a new test that breaks as a result of the bug (if possible).
+- [ ] I have updated the [CHANGELOG](https://github.com/RadioAstronomySoftwareGroup/pyuvdata/blob/main/CHANGELOG.md).
+
+New feature checklist:
+- [ ] I have added or updated the docstrings associated with my feature using the [numpy docstring format](https://numpydoc.readthedocs.io/en/latest/format.html).
+- [ ] I have updated the tutorial to highlight my new feature (if appropriate).
+- [ ] I have added/updated tests to cover my new feature.
+- [ ] I have updated the [CHANGELOG](https://github.com/RadioAstronomySoftwareGroup/pyuvdata/blob/main/CHANGELOG.md).
+
+Breaking change checklist:
+- [ ] I have updated the docstrings associated with my change using the [numpy docstring format](https://numpydoc.readthedocs.io/en/latest/format.html).
+- [ ] I have updated the tutorial to reflect my changes (if appropriate).
+- [ ] My change includes backwards compatibility and deprecation warnings (if possible).
+- [ ] I have added/updated tests to cover my changes.
+- [ ] I have updated the [CHANGELOG](https://github.com/RadioAstronomySoftwareGroup/pyuvdata/blob/main/CHANGELOG.md).
+
+Documentation change checklist:
+- [ ] Any updated docstrings use the [numpy docstring format](https://numpydoc.readthedocs.io/en/latest/format.html).
+- [ ] If this is a significant change to the readme or other docs, I have checked that they are rendered properly on ReadTheDocs. You can check this via the RTD CI build.
+
+Version change checklist:
+- [ ] I have updated the [CHANGELOG](https://github.com/RadioAstronomySoftwareGroup/pyuvdata/blob/main/CHANGELOG.md) to put all the unreleased changes under the new version (leaving the unreleased section empty).
+- [ ] I have noted any dependency changes since the last version and will update the conda package build accordingly.
+
+Build or continuous integration change checklist:
+- [ ] If required or optional dependencies have changed (including version numbers), I have updated the readme, pyproject.toml, environment.yaml and CI conda yaml files to reflect the changes.
+
+Other:
+- [ ] I have updated any docstrings associated with my change using the [numpy docstring format](https://numpydoc.readthedocs.io/en/latest/format.html).
+- [ ] I have updated the readme and/or tutorial to reflect my changes (if appropriate).
+- [ ] I have added/updated tests to cover my changes (if appropriate).
+- [ ] I have updated the [CHANGELOG](https://github.com/RadioAstronomySoftwareGroup/pyuvdata/blob/main/CHANGELOG.md).

pyuvdata-3.2.0/.github/workflows/macosx_windows_ci.yaml

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+name: Run Tests
+
+on:
+  push:
+    # This should disable running the workflow on tags, according to the
+    # on.<push|pull_request>.<branches|tags> GitHub Actions docs.
+    branches:
+      - "*"
+  pull_request:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  tests:
+    name: Run Tests
+    env:
+      PYTHON: ${{ matrix.python-version }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+     run:
+       # Adding -l {0} helps ensure conda can be found properly in windows.
+       shell: bash -l {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12"]
+        include:
+          - env_name: pyuvdata_tests_windows
+            os: windows-latest
+          - env_name: pyuvdata_tests_mac_arm
+            os: macos-latest
+          - env_name: pyuvdata_tests
+            os: macos-13
+            python-version: "3.12"
+    steps:
+      - uses: actions/checkout@main
+        with:
+          fetch-depth: 0
+
+      - name: Setup Miniforge
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniforge-version: latest
+          python-version: ${{ matrix.python-version }}
+          environment-file: ci/${{ matrix.env_name }}.yml
+          activate-environment: ${{ matrix.env_name }}
+          run-post: false
+
+      - name: Conda Info
+        run: |
+          conda info -a
+          conda list
+          PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
+          if [[ $PYVER != $PYTHON ]]; then
+            exit 1;
+          fi
+
+      - name: Install
+        run: |
+          CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install .
+
+      - name: Run Tests
+        run: |
+          python -m pytest -n auto --dist=loadfile --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:./coverage.xml
+
+      - uses: codecov/codecov-action@v5
+        if: success()
+        with:
+          token: ${{secrets.CODECOV_TOKEN}} #required
+          files: ./coverage.xml #optional

pyuvdata-3.2.0/.github/workflows/publish-to-test-pypi.yaml

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+name: Publish Python distributions to PyPI and TestPyPI
+
+on:
+  release:
+    types: [published]
+  pull_request:
+    branch: main
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  build_wheels:
+    name: Build wheel for ${{ matrix.python }}-${{ matrix.buildplat[1] }} ${{ matrix.buildplat[2] }}
+    runs-on: ${{ matrix.buildplat[0] }}
+    strategy:
+      fail-fast: false
+      matrix:
+        buildplat:
+          - [ubuntu-latest, manylinux, x86_64]
+          - [macos-13, macosx, x86_64]
+          - [macos-latest, macosx, arm64]
+          - [windows-latest, win, AMD64]
+        python: ["cp310", "cp311", "cp312"]
+    steps:
+      - uses: actions/checkout@main
+        with:
+          fetch-depth: 0
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.23
+        env:
+          CIBW_BUILD: ${{ matrix.python }}-${{ matrix.buildplat[1] }}*
+          CIBW_ARCHS: ${{ matrix.buildplat[2] }}
+          CIBW_TEST_REQUIRES: "-r ci/test_requirements.txt"
+          CIBW_TEST_COMMAND: "pytest {project}/tests -n auto"
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-wheels-${{ matrix.python }}-${{ matrix.buildplat[1] }}-${{ matrix.buildplat[2] }}
+          path: ./wheelhouse/*.whl
+
+  make_sdist:
+    name: Make SDist
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@main
+        with:
+          fetch-depth: 0
+
+      - name: Build SDist
+        run: pipx run build --sdist
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: cibw-sdist
+          path: dist/*.tar.gz
+
+  upload_all:
+    needs: [build_wheels, make_sdist]
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          # unpacks all CIBW artifacts into dist/
+          pattern: cibw-*
+          path: dist
+          merge-multiple: true
+
+      - name: Upload to test PyPI
+        if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.test_pypi_password }}
+          repository_url: https://test.pypi.org/legacy/
+
+      - name: Upload to PyPI
+        if: startsWith(github.ref, 'refs/tags')
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.pypi_password }}

pyuvdata-3.2.0/.github/workflows/warning_test.yaml

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+name: Warning Tests
+
+on:
+  push:
+    # This should disable running the workflow on tags, according to the
+    # on.<push|pull_request>.<branches|tags> GitHub Actions docs.
+    branches:
+      - "*"
+  pull_request:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  warning_test:
+    env:
+      PYTHON: 3.11
+    name: Warning Test
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@main
+        with:
+          fetch-depth: 0
+
+      - name: Setup Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ env.PYTHON }}
+
+      - name: Install
+        run: |
+          CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install -e .[dev]
+          pip install pytest-xdist
+
+      - name: Environment Info
+        run: |
+          pip list
+          PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
+          if [[ $PYVER != ${{ env.PYTHON }} ]]; then
+            exit 1;
+          fi
+
+      - name: Run Tests
+        run: |
+          pytest -W error -n auto --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:coverage.xml
+
+      - uses: codecov/codecov-action@v5
+        if: success()
+        with:
+          token: ${{secrets.CODECOV_TOKEN}} #required
+          files: ./coverage.xml #optional

pyuvdata-3.2.0/.pre-commit-config.yaml

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+exclude: '(^docs/conf.py|^docs/references/|^src/pyuvdata/data/|^src/pyuvdata/uvdata/src/|.codecov.yml)'
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+        - id: trailing-whitespace
+        - id: check-added-large-files
+        - id: check-ast
+        - id: check-json
+        - id: check-merge-conflict
+        - id: check-xml
+        - id: check-yaml
+        - id: debug-statements
+        - id: end-of-file-fixer
+        - id: mixed-line-ending
+          args: ['--fix=no']
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.11.6
+    hooks:
+      - id: ruff
+      - id: ruff-format
+
+  - repo: https://github.com/PyCQA/bandit
+    rev: 1.8.3
+    hooks:
+      - id: bandit
+        args: [--skip, "B101", --recursive, pyuvdata]