pyuvdata 3.0.0__tar.gz → 3.1.1__tar.gz

pyuvdata-3.1.1/.coveragerc

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+[run]
+plugins = Cython.Coverage
+concurrency = multiprocessing
+parallel = true
+omit =
+  */tests/*
+  */docs/*
+  */data/*
+  setup.py
+source =
+  pyuvdata
+
+[report]
+omit =
+  */tests/*
+  */docs/*
+  */data/*
+  setup.py
+
+show_missing = true
+
+[paths]
+source =
+    src
+    */site-packages"
+tests =
+    tests
+    */tests

pyuvdata-3.1.1/.github/workflows/macosx_windows_ci.yaml

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+name: Run Tests
+
+on:
+  push:
+    # This should disable running the workflow on tags, according to the
+    # on.<push|pull_request>.<branches|tags> GitHub Actions docs.
+    branches:
+      - "*"
+  pull_request:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.head_ref || github.run_id }}
+  cancel-in-progress: true
+
+jobs:
+  tests:
+    name: Run Tests
+    env:
+      PYTHON: ${{ matrix.python-version }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+     run:
+       # Adding -l {0} helps ensure conda can be found properly in windows.
+       shell: bash -l {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12"]
+        include:
+          - env_name: pyuvdata_tests_windows
+            os: windows-latest
+          - env_name: pyuvdata_tests_mac_arm
+            os: macos-latest
+          - env_name: pyuvdata_tests
+            os: macos-13
+            python-version: "3.12"
+    steps:
+      - uses: actions/checkout@main
+        with:
+          fetch-depth: 0
+
+      - name: Setup Miniforge
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniforge-version: latest
+          python-version: ${{ matrix.python-version }}
+          environment-file: ci/${{ matrix.env_name }}.yml
+          activate-environment: ${{ matrix.env_name }}
+          run-post: false
+
+      - name: Conda Info
+        run: |
+          conda info -a
+          conda list
+          PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
+          if [[ $PYVER != $PYTHON ]]; then
+            exit 1;
+          fi
+
+      - name: Install
+        run: |
+          CFLAGS="-DCYTHON_TRACE=1 -DCYTHON_TRACE_NOGIL=1" pip install .
+
+      - name: Run Tests
+        run: |
+          python -m pytest -n auto --dist=loadfile --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:./coverage.xml
+
+      - uses: codecov/codecov-action@v4
+        if: success()
+        with:
+          token: ${{secrets.CODECOV_TOKEN}} #required
+          file: ./coverage.xml #optional
+  benchmark:
+    name: Performance Benchmark
+    needs: tests
+    env:
+      PYTHON: ${{ matrix.python-version }}
+    runs-on: ${{ matrix.os }}
+    defaults:
+     run:
+       # Adding -l {0} helps ensure conda can be found properly in windows.
+       shell: bash -l {0}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [macos-latest, windows-latest, ubuntu-latest]
+        python-version: ["3.12"]
+        include:
+          - env_name: pyuvdata_tests_windows
+            os: windows-latest
+          - env_name: pyuvdata_tests_mac_arm
+            os: macos-latest
+          - env_name: pyuvdata_tests
+            os: macos-13
+            python-version: "3.12"
+          - env_name: pyuvdata_tests
+            os: ubuntu-latest
+    steps:
+      - uses: actions/checkout@main
+        with:
+          fetch-depth: 0
+
+      - name: Setup Miniforge
+        uses: conda-incubator/setup-miniconda@v3
+        with:
+          miniforge-version: latest
+          python-version: ${{ matrix.python-version }}
+          environment-file: ci/${{ matrix.env_name }}.yml
+          activate-environment: ${{ matrix.env_name }}
+          run-post: false
+
+      - name: Conda Info
+        run: |
+          conda info -a
+          conda list
+          PYVER=`python -c "import sys; print('{:d}.{:d}'.format(sys.version_info.major, sys.version_info.minor))"`
+          if [[ $PYVER != $PYTHON ]]; then
+            exit 1;
+          fi
+
+      # also install benchmark utility
+      - name: Install
+        run: |
+          pip install pytest-benchmark
+          pip install .
+
+      - name: Run benchmark
+        run: |
+          pytest --benchmark-only --benchmark-json output.json
+
+      # Download previous benchmark result from cache (if exists)
+      - name: Download previous benchmark data
+        uses: actions/cache/restore@v4
+        with:
+          path: ./cache
+          key: ${{ matrix.os }}-benchmark
+
+      # Run `github-action-benchmark` action
+      # this step also EDITS the ./cache/benchmark-data.json file
+      # We do not need to add output.json to the cache directory
+      - name: Compare benchmarks
+        uses: benchmark-action/github-action-benchmark@v1
+        with:
+          # What benchmark tool the output.txt came from
+          tool: 'pytest'
+          # Where the output from the benchmark tool is stored
+          output-file-path: output.json
+          # Where the previous data file is stored
+          external-data-json-path: ./cache/benchmark-data.json
+          # Workflow will fail when an alert happens
+          fail-on-alert: true
+          # Comment on the PR if the branch is not a fork
+          comment-on-alert: true
+          # Enable Job Summary for PRs
+          summary-always: true
+          github-token: ${{ secrets.GITHUB_TOKEN }}
+
+
+      - name: Store benchmark results
+        uses: actions/cache/save@v4
+        # only store the cache if being run on main
+        if: github.ref == 'refs/heads/main'
+        with:
+          path: ./cache
+          key: ${{ matrix.os }}-benchmark

pyuvdata-3.1.1/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# benchmarks
+.benchmarks/
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+cov.xml
+*,cover
+.pytest_cache
+pyuvdata/tests/cover
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+docs/_build/
+docs/index.rst
+docs/uvdata.rst
+docs/uvcal.rst
+docs/uvbeam.rst
+docs/uvflag.rst
+docs/telescope.rst
+
+# PyBuilder
+target/
+
+# Latex
+docs/references/*.aux
+docs/references/*.out
+docs/references/*.toc
+docs/references/_minted*/*.pygtex
+docs/references/_minted*/*.pygstyle
+
+# autogenerated c code
+src/pyuvdata/utils/bls.c
+src/pyuvdata/utils/phasing.c
+src/pyuvdata/utils/coordinates.c
+src/pyuvdata/uvbeam/uvbeam.c
+src/pyuvdata/uvdata/corr_fits.c
+src/pyuvdata/uvdata/src/miriad_wrap.cpp
+
+.vscode/

pyuvdata-3.1.1/.pre-commit-config.yaml

@@ -0,0 +1,29 @@
+exclude: '(^docs/conf.py|^docs/references/|^src/pyuvdata/data/|^src/pyuvdata/uvdata/src/|.codecov.yml)'
+
+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v5.0.0
+    hooks:
+        - id: trailing-whitespace
+        - id: check-added-large-files
+        - id: check-ast
+        - id: check-json
+        - id: check-merge-conflict
+        - id: check-xml
+        - id: check-yaml
+        - id: debug-statements
+        - id: end-of-file-fixer
+        - id: mixed-line-ending
+          args: ['--fix=no']
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.7.0
+    hooks:
+      - id: ruff
+      - id: ruff-format
+
+  - repo: https://github.com/PyCQA/bandit
+    rev: 1.7.10
+    hooks:
+      - id: bandit
+        args: [--skip, "B101", --recursive, pyuvdata]