pyuvdata 2.4.1__tar.gz → 2.4.3__tar.gz

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/.circleci/config.yml

@@ -2,7 +2,7 @@ version: 2.1
 executors:
   uvdata-executor:
       machine:
-        image: ubuntu-2004:202101-01
+        image: default
       shell: /bin/bash -leo pipefail
 orbs:
   codecov: codecov/codecov@3.2.4 # to get this to work, had to opt-in to using third party orbs in Organization Security settings.
@@ -125,14 +125,6 @@ workflows:
   version: 2
   build_and_test:
     jobs:
-      - pyuvdata:
-          name: pyuvdata_3.8
-          python_version: "3.8"
-          env_name: "pyuvdata_tests"
-      - pyuvdata:
-          name: pyuvdata_3.9
-          python_version: "3.9"
-          env_name: "pyuvdata_tests"
       - pyuvdata:
           name: pyuvdata_3.10
           python_version: "3.10"
@@ -141,14 +133,18 @@ workflows:
           name: pyuvdata_3.11
           python_version: "3.11"
           env_name: "pyuvdata_tests"
+      - pyuvdata:
+          name: pyuvdata_3.12
+          python_version: "3.12"
+          env_name: "pyuvdata_tests"
       - pyuvdata:
           name: pyuvdata_min_deps
-          python_version: "3.9"
+          python_version: "3.11"
           env_name: "pyuvdata_min_deps_tests"
       - pyuvdata:
           name: pyuvdata_min_versions
-          python_version: "3.8"
+          python_version: "3.10"
           env_name: "pyuvdata_min_versions_tests"
       - doctest:
-          python_version: "3.9"
+          python_version: "3.11"
           env_name: "pyuvdata_tests"

pyuvdata-2.4.3/.codecov.yml

@@ -0,0 +1,3 @@
+codecov:
+  ci:
+    - "!azure-pipelines"  # ignore CI builds by azure pipelines

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/.github/workflows/macosx_windows_ci.yaml

@@ -26,7 +26,7 @@ jobs:
       fail-fast: false
       matrix:
         os: [macos-latest, windows-latest]
-        python-version: [3.8, 3.9, "3.10", "3.11"]
+        python-version: ["3.10", "3.11", "3.12"]
     steps:
       - uses: actions/checkout@main
         with:
@@ -42,7 +42,7 @@ jobs:
         id: env_name
 
       - name: Setup Minimamba
-        uses: conda-incubator/setup-miniconda@v2
+        uses: conda-incubator/setup-miniconda@v3
         with:
           miniforge-variant: Mambaforge
           miniforge-version: latest
@@ -72,7 +72,7 @@ jobs:
           pytest --pyargs pyuvdata -n auto --dist=loadfile --cov=pyuvdata --cov-config=../.coveragerc --cov-report xml:../coverage.xml
           cd ..
 
-      - uses: codecov/codecov-action@v3
+      - uses: codecov/codecov-action@v4
         if: success()
         with:
           token: ${{secrets.CODECOV_TOKEN}} #required

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/.github/workflows/publish-to-test-pypi.yaml

@@ -22,18 +22,18 @@ jobs:
           - [macos-12, macosx, x86_64]
           - [macos-12, macosx, arm64]
           - [windows-2019, win, AMD64]
-        python: ["cp38", "cp39", "cp310", "cp311"]
+        python: ["cp310", "cp311", "cp312"]
     steps:
       - uses: actions/checkout@main
         with:
           fetch-depth: 0
 
       - name: Build wheels
-        uses: pypa/cibuildwheel@v2.11.2
+        uses: pypa/cibuildwheel@v2.16.5
         env:
           CIBW_BUILD: ${{ matrix.python }}-${{ matrix.buildplat[1] }}*
           CIBW_ARCHS: ${{ matrix.buildplat[2] }}
-          CIBW_TEST_REQUIRES: packaging pytest pytest-cov pytest-cases
+          CIBW_TEST_REQUIRES: "-r ci/test_requirements.txt"
           CIBW_TEST_COMMAND: "python -m pytest --pyargs pyuvdata"
           CIBW_TEST_SKIP: "*-macosx_arm64"
 

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/.github/workflows/warning_test.yaml

@@ -15,7 +15,7 @@ concurrency:
 jobs:
   warning_test:
     env:
-      PYTHON: 3.9
+      PYTHON: 3.11
     name: Warning Test
     runs-on: ubuntu-latest
     steps:
@@ -44,7 +44,7 @@ jobs:
         run: |
           pytest -W error --pyargs pyuvdata --cov=pyuvdata --cov-config=.coveragerc --cov-report xml:coverage.xml
 
-      - uses: codecov/codecov-action@v3
+      - uses: codecov/codecov-action@v4
         if: success()
         with:
           token: ${{secrets.CODECOV_TOKEN}} #required

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/.pre-commit-config.yaml

@@ -16,32 +16,32 @@ repos:
         - id: mixed-line-ending
           args: ['--fix=no']
   - repo: https://github.com/pycqa/flake8
-    rev: '6.1.0'
+    rev: '7.0.0'
     hooks:
       - id: flake8
         additional_dependencies:
-          - flake8-bugbear>=23.1.17
-          - flake8-builtins
-          - flake8-comprehensions
-          - flake8-docstrings
-          # - flake8-eradicate  # not currently compatible with others
-          - flake8-pytest-style
-          - flake8-rst-docstrings
-          - pep8-naming
+          - flake8-bugbear>=23.12.2
+          - flake8-builtins>=2.2.0
+          - flake8-comprehensions>=3.14.0
+          - flake8-docstrings>=1.7.0
+          # - flake8-eradicate>=1.5.0  # many false-positives
+          - flake8-pytest-style>=1.7.2
+          - flake8-rst-docstrings>=0.3.0
+          - pep8-naming>=0.13.3
 
   - repo: https://github.com/psf/black
-    rev: 23.9.1
+    rev: 24.3.0
     hooks:
       - id: black
 
   - repo: https://github.com/PyCQA/bandit
-    rev: 1.7.5
+    rev: 1.7.8
     hooks:
       - id: bandit
         args: [--skip, "B101", --recursive, pyuvdata]
 
   - repo: https://github.com/pycqa/isort
-    rev: 5.12.0
+    rev: 5.13.2
     hooks:
       - id: isort
         name: isort (python)

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/CHANGELOG.md

@@ -3,6 +3,114 @@ All notable changes to this project will be documented in this file.
 
 ## [Unreleased]
 
+## [2.4.3] - 2024-3-25
+
+### Added
+- Support for new lunar ellipsoids in `lunarsky` version 0.2.2.
+- Added new keyword handling for v.6 of the MIR data format within `MirParser`.
+
+### Changed
+- Updated minimum dependency versions: astropy>=6.0, h5py>=3.4, numpy>=1.23,
+pyerfa>=2.0.1.1, scipy>=1.7.3, python>=3.10
+- Updated minimum optional dependency versions: hdf5plugin>=3.2.0, pytest>=6.2.5,
+python-casacore>=3.5.2, pyyaml>=5.4.1, lunarsky>=0.2.2
+- Speed up for reading MWA correlator FITS files into `UVData`.
+- Now compatible with pytest>=8.0 but require pytest-cases>=3.8.3.
+
+### Fixed
+- Fixed a bug where SMA-based coordinates were recorded as FK5 for sidereal sources
+(should be ICRS).
+- Bug in which passing 'ee' or 'nn' pols to UVData.new() would error, even if
+`x_orientation` was passed.
+
+## [2.4.2] - 2024-2-22
+
+### Added
+- Added a new redundancy finding algorithm based on the HERA gridding algorithm.
+This new algorithm is used by default but the older clustering algorithm is still
+available.
+- Added support for initializing `MirParser` and `MirMetaData` objects from `Path`
+objects.
+- Added a brief tutorial on how to convert SMA MIR data into MS format (with some notes
+on SMA specific keywords than can be used).
+- Added the `Mir.generate_sma_antpos_dict` method for reading in SMA-formatted antenna
+position files into a dict (which can be passed to `UVData.update_antenna_positions`).
+- Added handling for older formatted (so called "ASIC-era") MIR files from SMA, as well
+as more recent file formats that preceded pyuvdata support (circa 2020, v1/v2 of the
+MIR file format).
+- Added the ability to save/load selection masks in `MirParser` objects.
+- Fixed a bug when trying to write a MS with a legacy array shape (but note legacy shape
+will be deprecated in upcoming releases).
+- Improved support for MIRIAD UV files, and added `use_miriad_convention` flag to the
+UVFITS writer code, so files with the MIRIAD `BASELINE` convention can be created.
+- A new `freq_interp_kind` parameter to `UVBeam.interp`, `UVBeam._interp_az_za_rect_spline`
+and `UVBeam._interp_healpix_bilinear` to allow the frequency interpolation
+specification to be passed into the methods. Note this defaults to "cubic" rather
+than "linear" (the old default for the attribute of the same name on UVBeam objects)
+because several groups have found that a linear interpolation leads to nasty
+artifacts in visibility simulations for EoR applications.
+- A new `UVBeam.new()` method (based on new function `new_uvbeam`) that creates a new,
+self-consistent `UVBeam` object from scratch from a set of flexible input parameters.
+- Added a the `UVData.update_antenna_positions` method to enable making antenna
+position updates with corresponding updates the uvw-coordinates and visibility phases.
+- Added a switch to `UVData.write_ms` called `flip_conj`, which allows a user to write
+out data with the baseline conjugation scheme flipped from the standard `UVData`
+convention.
+- Added the `utils.determine_pol_order` method for determining polarization
+order based on a specified scheme ("AIPS" or "CASA").
+- Added a `check_surface_based_positions` positions method for verifying antenna
+positions are near surface of whatever celestial body their positions are referenced to
+(either the Earth or Moon, currently).
+
+### Changed
+- Made the determination of whether or not to create a flex-pol dataset when reading
+in a MIR more robust (particularly with pre-V3 data formats).
+- Reading in of MIR data sets into `UVData` objects will now use pyuvdata-calculated
+values for `lst_array` via (`UVData.set_lsts_from_time_array`) instead of those read in
+from the file due to known precision issues in the later (~25 ms), so long as the two
+agree within this known precision limit.
+- `UVFlag.to_baseline` and `UVFlag.to_antenna` are now more robust to differences
+in antenna metadata sorting.
+- Made `MirParser` more robust against metadata indexing errors.
+- Made `MirParser` handling of autocorrelation data more robust.
+- Improved hooks for handling and loading of COMPASS solutions into `MirParser` objects.
+- Fixed handling of weights to be consistent with tsys scaling method in `MirParser`.
+- Changed `MWACorrFits.corrcorrect_simps` method to use the `scipy.integrate.simpson`
+method rather than the `scipy.integrate.simps` method to fix deprecation warnings.
+- added support for python 3.12, dropped support for python 3.8.
+- Updated minimum dependency versions: pyyaml>=5.3
+- Changed `UVData.write_ms` to sort polarizations based on CASA-preferred ordering.
+- Added some functionality to the `utils._convert_to_slices` method to enable quick
+assessment of whether an indexing array can be replaced by a single slice.
+- Increased the tolerance to 75 mas (equivalent to 5 ms time error) for a warning about
+values in `lst_array` not conforming to expectations for `UVData`, `UVCal`, and `UVFlag`
+(was 1 mas) inside of `check`. Additionally, added a keyword to `check` enable the
+tolerance value to be user-specified.
+- Changed the behavior of checking of telescope location to look at the combination of
+`antenna_positions` and `telescope_location` together for `UVData`, `UVCal`, and `UVFlag`.
+Additionally, failing this check results in a warning (was an error).
+
+### Deprecated
+- The `freq_interp_kind` attribute on UVBeams.
+- The `spw_array` and `Nspws` attributes on UVBeam objects. Also the
+`unset_spw_params`  and `set_spw_params` parameters to the `use_future_array_shapes`
+and `use_current_array_shapes` methods on UVBeam objects.
+- Upper case feed names (e.g. "N" or "E") in UVBeam.feed_array. This was never
+fully tested and didn't work properly.
+- Having `freq_range` defined on non-wide-band gain style UVCal objects.
+- Having `freq_array` and `channel_width` defined on wide-band UVCal objects.
+
+### Fixed
+- A bug where `time_array` was not being correctly calculated for older (pre-V3) MIR
+data formats.
+- A small bug in UVFlag that could occur when reading in an older UVFlag HDF5
+file with missing antenna metadata.
+- A small bug (mostly affecting continuous integration) that threw an error when the
+IERS service was down and when tests were using `test.check_warnings` to look for no
+warnings thrown (i.e., where `match=None`).
+- A couple of small bugs related to handling of the `freq_range` parameter in the
+`reorder_freqs` and `__add__` methods on `UVCal`.
+
 ## [2.4.1] - 2023-10-13
 
 ### Added

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.1
 Name: pyuvdata
-Version: 2.4.1
+Version: 2.4.3
 Summary: an interface for astronomical interferometeric datasets in python
 Home-page: https://github.com/RadioAstronomySoftwareGroup/pyuvdata
 Author: Radio Astronomy Software Group
@@ -9,80 +9,81 @@ Keywords: radio astronomy interferometry
 Classifier: Development Status :: 5 - Production/Stable
 Classifier: Intended Audience :: Science/Research
 Classifier: License :: OSI Approved :: BSD License
-Classifier: Programming Language :: Python :: 3.8
-Classifier: Programming Language :: Python :: 3.9
 Classifier: Programming Language :: Python :: 3.10
 Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
 Classifier: Topic :: Scientific/Engineering :: Astronomy
 Description-Content-Type: text/markdown
 License-File: LICENSE
-Requires-Dist: astropy>=5.0.4
+Requires-Dist: astropy>=6.0
 Requires-Dist: docstring-parser>=0.15
-Requires-Dist: h5py>=3.1
-Requires-Dist: numpy>=1.20
-Requires-Dist: pyerfa>=2.0
-Requires-Dist: scipy>=1.5
+Requires-Dist: h5py>=3.4
+Requires-Dist: numpy>=1.23
+Requires-Dist: pyerfa>=2.0.1.1
+Requires-Dist: scipy>=1.7.3
 Requires-Dist: setuptools>=61
 Requires-Dist: setuptools_scm!=7.0.0,!=7.0.1,!=7.0.2
 Provides-Extra: astroquery
 Requires-Dist: astroquery>=0.4.4; extra == "astroquery"
 Provides-Extra: casa
-Requires-Dist: python-casacore>=3.3.1; extra == "casa"
+Requires-Dist: python-casacore>=3.5.2; extra == "casa"
 Provides-Extra: cst
-Requires-Dist: pyyaml>=5.1; extra == "cst"
+Requires-Dist: pyyaml>=5.4.1; extra == "cst"
 Provides-Extra: hdf5-compression
-Requires-Dist: hdf5plugin>=3.1.0; extra == "hdf5-compression"
+Requires-Dist: hdf5plugin>=3.2.0; extra == "hdf5-compression"
 Provides-Extra: healpix
 Requires-Dist: astropy_healpix>=0.6; extra == "healpix"
 Provides-Extra: lunar
-Requires-Dist: lunarsky>=0.2.1; extra == "lunar"
+Requires-Dist: lunarsky>=0.2.2; extra == "lunar"
 Provides-Extra: novas
 Requires-Dist: novas; extra == "novas"
 Requires-Dist: novas_de405; extra == "novas"
 Provides-Extra: all
 Requires-Dist: astroquery>=0.4.4; extra == "all"
-Requires-Dist: python-casacore>=3.3.1; extra == "all"
-Requires-Dist: pyyaml>=5.1; extra == "all"
-Requires-Dist: hdf5plugin>=3.1.0; extra == "all"
+Requires-Dist: python-casacore>=3.5.2; extra == "all"
+Requires-Dist: pyyaml>=5.4.1; extra == "all"
+Requires-Dist: hdf5plugin>=3.2.0; extra == "all"
 Requires-Dist: astropy_healpix>=0.6; extra == "all"
-Requires-Dist: lunarsky>=0.2.1; extra == "all"
+Requires-Dist: lunarsky>=0.2.2; extra == "all"
 Requires-Dist: novas; extra == "all"
 Requires-Dist: novas_de405; extra == "all"
 Provides-Extra: test
 Requires-Dist: astroquery>=0.4.4; extra == "test"
-Requires-Dist: python-casacore>=3.3.1; extra == "test"
-Requires-Dist: pyyaml>=5.1; extra == "test"
-Requires-Dist: hdf5plugin>=3.1.0; extra == "test"
+Requires-Dist: python-casacore>=3.5.2; extra == "test"
+Requires-Dist: pyyaml>=5.4.1; extra == "test"
+Requires-Dist: hdf5plugin>=3.2.0; extra == "test"
 Requires-Dist: astropy_healpix>=0.6; extra == "test"
-Requires-Dist: lunarsky>=0.2.1; extra == "test"
+Requires-Dist: lunarsky>=0.2.2; extra == "test"
 Requires-Dist: novas; extra == "test"
 Requires-Dist: novas_de405; extra == "test"
-Requires-Dist: pytest>=6.2; extra == "test"
+Requires-Dist: pytest>=6.2.5; extra == "test"
 Requires-Dist: pytest-xdist; extra == "test"
-Requires-Dist: pytest-cases>=3.6.9; extra == "test"
+Requires-Dist: pytest-cases>=3.8.3; extra == "test"
 Requires-Dist: pytest-cov; extra == "test"
 Requires-Dist: cython; extra == "test"
 Requires-Dist: coverage; extra == "test"
 Requires-Dist: pre-commit; extra == "test"
 Provides-Extra: doc
+Requires-Dist: matplotlib; extra == "doc"
 Requires-Dist: sphinx; extra == "doc"
 Requires-Dist: pypandoc; extra == "doc"
 Provides-Extra: dev
 Requires-Dist: astroquery>=0.4.4; extra == "dev"
-Requires-Dist: python-casacore>=3.3.1; extra == "dev"
-Requires-Dist: pyyaml>=5.1; extra == "dev"
-Requires-Dist: hdf5plugin>=3.1.0; extra == "dev"
+Requires-Dist: python-casacore>=3.5.2; extra == "dev"
+Requires-Dist: pyyaml>=5.4.1; extra == "dev"
+Requires-Dist: hdf5plugin>=3.2.0; extra == "dev"
 Requires-Dist: astropy_healpix>=0.6; extra == "dev"
-Requires-Dist: lunarsky>=0.2.1; extra == "dev"
+Requires-Dist: lunarsky>=0.2.2; extra == "dev"
 Requires-Dist: novas; extra == "dev"
 Requires-Dist: novas_de405; extra == "dev"
-Requires-Dist: pytest>=6.2; extra == "dev"
+Requires-Dist: pytest>=6.2.5; extra == "dev"
 Requires-Dist: pytest-xdist; extra == "dev"
-Requires-Dist: pytest-cases>=3.6.9; extra == "dev"
+Requires-Dist: pytest-cases>=3.8.3; extra == "dev"
 Requires-Dist: pytest-cov; extra == "dev"
 Requires-Dist: cython; extra == "dev"
 Requires-Dist: coverage; extra == "dev"
 Requires-Dist: pre-commit; extra == "dev"
+Requires-Dist: matplotlib; extra == "dev"
 Requires-Dist: sphinx; extra == "dev"
 Requires-Dist: pypandoc; extra == "dev"
 
@@ -223,29 +224,28 @@ There are some optional dependencies that are required for specific functionalit
 which will not be installed automatically by conda or pip.
 See [Dependencies](#dependencies) for details on installing optional dependencies.
 
-Note that as of v2.2, `pyuvdata` is only supported on python 3.7+.
-
 ## Dependencies
 
 Required:
 
-* astropy >= 5.0.4
+* astropy >= 6.0
 * docstring_parser>=0.15
-* h5py >= 3.1
-* numpy >= 1.20
-* pyerfa >= 2.0
-* scipy >= 1.5
+* h5py >= 3.4
+* numpy >= 1.23
+* pyerfa >= 2.0.1.1
+* python >= 3.10
+* scipy >= 1.7.3
 * setuptools_scm <7.0|>=7.0.3
 
 Optional:
 
 * astropy-healpix >= 0.6 (for working with beams in HEALPix formats)
 * astroquery >= 0.4.4 (for enabling phasing to ephemeris objects using JPL-Horizons)
-* hdf5plugin >= 3.1.0 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
-* lunarsky >=0.2.1 (for working with simulated datasets for lunar telescopes)
+* hdf5plugin >= 3.2.0 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
+* lunarsky >=0.2.2 (for working with simulated datasets for lunar telescopes)
 * novas and novas_de405 (for using the NOVAS library for astrometry)
-* python-casacore >= 3.3.1 (for working with CASA measurement sets)
-* pyyaml >= 5.1 (for working with settings files for CST beam files)
+* python-casacore >= 3.5.2 (for working with CASA measurement sets)
+* pyyaml >= 5.4.1 (for working with settings files for CST beam files)
 
 
 The numpy and astropy versions are important, so make sure these are up to date.
@@ -296,11 +296,12 @@ If you want to do development on pyuvdata, in addition to the other dependencies
 you will need the following packages:
 
 * pytest >= 6.2
-* pytest-cases >= 3.6.9
+* pytest-cases >= 3.8.3
 * pytest-cov
-* cython >=0.23  (This is necessary for coverage reporting of cython extensions)
+* cython >=0.23
 * coverage
 * pre-commit
+* matplotlib
 * sphinx
 * pypandoc
 

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/README.md

@@ -135,29 +135,28 @@ There are some optional dependencies that are required for specific functionalit
 which will not be installed automatically by conda or pip.
 See [Dependencies](#dependencies) for details on installing optional dependencies.
 
-Note that as of v2.2, `pyuvdata` is only supported on python 3.7+.
-
 ## Dependencies
 
 Required:
 
-* astropy >= 5.0.4
+* astropy >= 6.0
 * docstring_parser>=0.15
-* h5py >= 3.1
-* numpy >= 1.20
-* pyerfa >= 2.0
-* scipy >= 1.5
+* h5py >= 3.4
+* numpy >= 1.23
+* pyerfa >= 2.0.1.1
+* python >= 3.10
+* scipy >= 1.7.3
 * setuptools_scm <7.0|>=7.0.3
 
 Optional:
 
 * astropy-healpix >= 0.6 (for working with beams in HEALPix formats)
 * astroquery >= 0.4.4 (for enabling phasing to ephemeris objects using JPL-Horizons)
-* hdf5plugin >= 3.1.0 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
-* lunarsky >=0.2.1 (for working with simulated datasets for lunar telescopes)
+* hdf5plugin >= 3.2.0 (for enabling bitshuffle and other hdf5 compression filters in uvh5 files)
+* lunarsky >=0.2.2 (for working with simulated datasets for lunar telescopes)
 * novas and novas_de405 (for using the NOVAS library for astrometry)
-* python-casacore >= 3.3.1 (for working with CASA measurement sets)
-* pyyaml >= 5.1 (for working with settings files for CST beam files)
+* python-casacore >= 3.5.2 (for working with CASA measurement sets)
+* pyyaml >= 5.4.1 (for working with settings files for CST beam files)
 
 
 The numpy and astropy versions are important, so make sure these are up to date.
@@ -208,11 +207,12 @@ If you want to do development on pyuvdata, in addition to the other dependencies
 you will need the following packages:
 
 * pytest >= 6.2
-* pytest-cases >= 3.6.9
+* pytest-cases >= 3.8.3
 * pytest-cov
-* cython >=0.23  (This is necessary for coverage reporting of cython extensions)
+* cython >=0.23
 * coverage
 * pre-commit
+* matplotlib
 * sphinx
 * pypandoc
 

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/ci/azure-piplines.yml

@@ -8,7 +8,7 @@ jobs:
   steps:
   - task: UsePythonVersion@0
     inputs:
-      versionSpec: "3.10"
+      versionSpec: "3.12"
 
   - bash: |
       cd ../
@@ -17,7 +17,7 @@ jobs:
     displayName: clone hera_cal
 
   - bash: |
-      pip install .[dev]
+      pip install .
     displayName: install pyuvdata
 
   - bash: |
@@ -74,7 +74,7 @@ jobs:
       cd ../hera_qm
       pip install --no-deps .
       mkdir test-reports
-      python -m pytest hera_qm --junitxml=test-reports/xunit.xml
+      python -m pytest hera_qm --junitxml=test-reports/xunit.xml -W "ignore" -W "default:::pyuvdata"
     displayName: run hera_qm tests
 
 - job: pyradiosky
@@ -127,7 +127,7 @@ jobs:
     vmImage: "ubuntu-latest"
   variables:
     PYTHON: "3.10"
-    ENV_NAME: pyuvsim_tests
+    ENV_NAME: pyuvsim_tests_openmpi
     WITH_SUDO: true
 
   steps:

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/ci/pyuvdata_min_deps_tests.yml

@@ -2,15 +2,15 @@ name: pyuvdata_min_deps_tests
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=6.0
   - docstring_parser>=0.15
   - h5py>=3.1
   - scipy>=1.5
-  - numpy>=1.20.*
+  - numpy>=1.23
   - pyerfa>=2.0
   - coverage
   - pytest>=6.2.0
-  - pytest-cases>=3.6.9
+  - pytest-cases>=3.8.3
   - pytest-cov
   - pytest-xdist
   - cython

pyuvdata-2.4.3/ci/pyuvdata_min_versions_tests.yml

@@ -0,0 +1,28 @@
+name: pyuvdata_min_versions_tests
+channels:
+  - conda-forge
+dependencies:
+  - astropy==6.0.0
+  - astropy-healpix==0.6
+  - astroquery==0.4.4
+  - docstring_parser==0.15
+  - h5py==3.4.0
+  - hdf5plugin==3.2.0
+  - numpy==1.23
+  - pyerfa==2.0.1.1
+  - python-casacore==3.5.0
+  - pyyaml==5.4.1
+  - scipy==1.7.3
+  - coverage
+  - pytest==6.2.5
+  - pytest-cases==3.8.3
+  - pytest-cov
+  - pytest-xdist
+  - cython
+  - setuptools==61
+  - setuptools_scm==7.0.3
+  - pip
+  - pip:
+      - lunarsky==0.2.2
+      - novas
+      - novas_de405

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/ci/pyuvdata_tests.yml

@@ -2,26 +2,27 @@ name: pyuvdata_tests
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=6.0
   - astropy-healpix>=0.6
   - astroquery>=0.4.4
   - docstring_parser>=0.15
-  - h5py>=3.1
-  - hdf5plugin>=3.1.0
-  - numpy>=1.20.*
-  - pyerfa>=2.0
-  - python-casacore>=3.3.1
-  - pyyaml>=5.1
-  - scipy>=1.5
+  - h5py>=3.4
+  - hdf5plugin>=3.2.0
+  - matplotlib  # this is just for the doctests.
+  - numpy>=1.23
+  - pyerfa>=2.0.1.1
+  - python-casacore>=3.5.2
+  - pyyaml>=5.4.1
+  - scipy>=1.7.3
   - coverage
-  - pytest>=6.2.0
-  - pytest-cases>=3.6.9
+  - pytest>=6.2.5
+  - pytest-cases>=3.8.3
   - pytest-cov
   - pytest-xdist
   - cython
   - setuptools_scm<7.0|>=7.0.3
   - pip
   - pip:
-      - lunarsky>=0.2.1
+      - lunarsky>=0.2.2
       - novas
       - novas_de405

{pyuvdata-2.4.1 → pyuvdata-2.4.3}/ci/pyuvdata_tests_windows.yml

@@ -2,24 +2,24 @@ name: pyuvdata_tests_windows
 channels:
   - conda-forge
 dependencies:
-  - astropy>=5.0.4
+  - astropy>=6.0
   - astropy-healpix>=0.6
   - astroquery>=0.4.4
   - docstring_parser>=0.15
-  - h5py>=3.1
+  - h5py>=3.4
   - hdf5>=1.12.0
-  - hdf5plugin>=3.1.0
-  - numpy>=1.20.*
-  - pyerfa>=2.0
-  - pyyaml>=5.1
-  - scipy>=1.5
+  - hdf5plugin>=3.2.0
+  - numpy>=1.23
+  - pyerfa>=2.0.1.1
+  - pyyaml>=5.4.1
+  - scipy>=1.7.3
   - coverage
-  - pytest>=6.2.0
-  - pytest-cases>=3.6.9
+  - pytest>=6.2.5
+  - pytest-cases>=3.8.3
   - pytest-cov
   - pytest-xdist
   - cython
   - setuptools_scm<7.0|>=7.0.3
   - pip
   - pip:
-      - lunarsky>=0.2.1
+      - lunarsky>=0.2.2