pytorch-concepts 0.0.12__tar.gz

pytorch_concepts-0.0.12/.circleci/config.yml

@@ -0,0 +1,38 @@
+version: 2
+
+jobs:
+  build:
+    docker:
+      - image: circleci/python:3.6.1
+    working_directory: ~/repo
+    steps:
+      - checkout
+      - run:
+          name: install dependencies
+          command: |
+            wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+            chmod +x miniconda.sh && ./miniconda.sh -b -p ~/miniconda
+            export PATH="~/miniconda/bin:$PATH"
+            conda update --yes --quiet conda
+            conda create -n testenv --yes --quiet python=3
+            source activate testenv
+            conda install --yes pip numpy scipy scikit-learn matplotlib sphinx sphinx_rtd_theme numpydoc pillow
+            pip install sphinx-gallery
+            pip install .
+            cd doc
+            make html
+      - store_artifacts:
+          path: doc/_build/html/
+          destination: doc
+      - store_artifacts:
+          path: ~/log.txt
+      - run: ls -ltrh doc/_build/html
+    filters:
+      branches:
+        ignore: gh-pages
+
+workflows:
+  version: 2
+  workflow:
+    jobs:
+      - build

pytorch_concepts-0.0.12/.coveragerc

@@ -0,0 +1,21 @@
+# Configuration for coverage.py
+
+[run]
+branch = True
+source = template
+include = */template/*
+omit =
+    */setup.py
+
+[report]
+exclude_lines =
+    pragma: no cover
+    def __repr__
+    if self.debug:
+    if settings.DEBUG
+    raise AssertionError
+    raise NotImplementedError
+    if 0:
+    if __name__ == .__main__.:
+    if self.verbose:
+show_missing = True

pytorch_concepts-0.0.12/.gitignore

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+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# scikit-learn specific
+doc/_build/
+doc/auto_examples/
+doc/modules/generated/
+doc/datasets/generated/
+
+# Distribution / packaging
+
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Sphinx documentation
+doc/_build/
+doc/generated/
+
+# PyBuilder
+target/
+
+# pycharm
+.idea/*
+
+# lightning logs
+examples/lightning_logs/
+lightning_logs/
+
+# results
+model_results.csv

pytorch_concepts-0.0.12/.readthedocs.yml

@@ -0,0 +1,8 @@
+formats:
+  - none
+requirements_file: requirements.txt
+python:
+  pip_install: true
+  extra_requirements:
+    - tests
+    - docs

pytorch_concepts-0.0.12/.travis.yml

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+dist: trusty
+sudo: false
+
+language: python
+
+cache:
+  directories:
+  - $HOME/.cache/pip
+
+matrix:
+  include:
+    - env: PYTHON_VERSION="3.7" NUMPY_VERSION="*" SCIPY_VERSION="*"
+           PANDAS_VERSION="*"
+
+install:
+  # install miniconda
+  - deactivate
+  - wget https://repo.continuum.io/miniconda/Miniconda3-latest-Linux-x86_64.sh -O miniconda.sh
+  - MINICONDA_PATH=/home/travis/miniconda
+  - chmod +x miniconda.sh && ./miniconda.sh -b -p $MINICONDA_PATH
+  - export PATH=$MINICONDA_PATH/bin:$PATH
+  - conda update --yes conda
+  # create the testing environment
+  - conda create -n testenv --yes python=$PYTHON_VERSION pip
+  - source activate testenv
+  - pip install codecov
+  - pip install -r requirements.txt .
+
+#script:
+#  - mkdir for_test
+#  - cd for_test
+#  - pytest -v --cov=dbgen --pyargs dbgen
+script:
+  - coverage run -m unittest || python3 -m unittest || python -m unittest
+
+after_success:
+  - codecov

pytorch_concepts-0.0.12/LICENSE

@@ -0,0 +1,201 @@
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pytorch_concepts-0.0.12/MANIFEST.in

@@ -0,0 +1,2 @@
+include requirements.txt
+recursive-include torch_concepts/assets *

pytorch_concepts-0.0.12/PKG-INFO

@@ -0,0 +1,160 @@
+Metadata-Version: 2.4
+Name: pytorch_concepts
+Version: 0.0.12
+Summary:  Concept-Based Deep Learning Library for PyTorch.
+Home-page: https://github.com/pyc-team/pytorch_concepts
+Download-URL: https://github.com/pyc-team/pytorch_concepts
+Author: PyC Team
+Author-email: pyc.devteam@gmail.com
+Maintainer: PyC Team
+Maintainer-email: pyc.devteam@gmail.com
+License: Apache 2.0
+Classifier: Intended Audience :: Developers
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved
+Classifier: Operating System :: MacOS
+Classifier: Operating System :: Microsoft :: Windows
+Classifier: Operating System :: POSIX
+Classifier: Operating System :: Unix
+Classifier: Programming Language :: Python :: 2.7
+Classifier: Programming Language :: Python :: 3.5
+Classifier: Programming Language :: Python :: 3.6
+Classifier: Programming Language :: Python :: 3.7
+Classifier: Programming Language :: Python
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Software Development
+Description-Content-Type: text/markdown
+License-File: LICENSE
+Requires-Dist: numpy
+Requires-Dist: opencv-python
+Requires-Dist: pandas
+Requires-Dist: Pillow==9.5.0
+Requires-Dist: scikit-learn
+Requires-Dist: scipy
+Requires-Dist: torch
+Provides-Extra: tests
+Requires-Dist: pytest-cov; extra == "tests"
+Requires-Dist: pytest; extra == "tests"
+Provides-Extra: docs
+Requires-Dist: matplotlib; extra == "docs"
+Requires-Dist: numpydoc; extra == "docs"
+Requires-Dist: sphinx_rtd_theme; extra == "docs"
+Requires-Dist: sphinx-gallery; extra == "docs"
+Requires-Dist: sphinx; extra == "docs"
+Dynamic: author
+Dynamic: author-email
+Dynamic: classifier
+Dynamic: description
+Dynamic: description-content-type
+Dynamic: download-url
+Dynamic: home-page
+Dynamic: license
+Dynamic: license-file
+Dynamic: maintainer
+Dynamic: maintainer-email
+Dynamic: provides-extra
+Dynamic: requires-dist
+Dynamic: summary
+
+![PyC Logo](https://raw.githubusercontent.com/pyc-team/pytorch_concepts/dev/doc/_static/img/pyc_logo.png)
+
+# PyTorch Concepts
+
+PyC (PyTorch Concepts) is a library built upon PyTorch to easily write and train Concept-Based Deep Learning models.
+
+## Low-level APIs
+
+**Concept data types** (`pyc.base`):
+
+- `AnnotatedTensor`: A subclass of `torch.Tensor` which assigns names to individual elements of each tensor dimension.
+
+**Base concept layers** (`pyc.nn.base`):
+
+- `Annotate`: A layer taking as input a common `tensor` and producing an `AnnotatedTensor` as output.
+- `LinearConceptLayer`: A layer which first applies a linear transformation to the input tensor, then it reshapes and annotates the output tensor.
+
+**Base functions** (`pyc.nn.functional`):
+
+- `intervene`: A function to intervene on concept scores.
+- `intervene_on_concept_graph`: A function to intervene on a concept adjacency matrix (it can be used to perform do-interventions).
+- `concept_embedding_mixture`: A function to generate a mixture of concept embeddings and concept predictions.
+
+## High-level APIs
+
+**Concept bottleneck layers** (`pyc.nn.bottleneck`):
+
+- `LinearConceptBottleneck`: A vanilla concept bottleneck from ["Concept Bottleneck Models"](https://arxiv.org/pdf/2007.04612) (ICML 2020).
+- `LinearConceptResidualBottleneck`: A residual bottleneck composed of a set of supervised concepts and a residual unsupervised embedding from ["Promises and Pitfalls of Black-Box Concept Learning Models"](https://arxiv.org/abs/2106.13314) (ICML 2021, workshop).
+- `ConceptEmbeddingBottleneck`: A bottleneck composed of supervised concept embeddings from ["Concept Embedding Models: Beyond the Accuracy-Explainability Trade-Off"](https://arxiv.org/abs/2209.09056) (NeurIPS 2022).
+
+## Evaluation APIs
+
+**Datasets** (`pyc.data`):
+
+- `TrafficLights`: A dataset loader for traffic scenarios representing road intersections.
+- `ToyDataset`: A toy dataset loader. XOR, Trigonometry, and Dot datasets are from ["Concept Embedding Models: Beyond the Accuracy-Explainability Trade-Off"](https://arxiv.org/abs/2209.09056) (NeurIPS 2022). The Checkmark dataset is from ["Causal Concept Embedding Models: Beyond Causal Opacity in Deep Learning"](https://arxiv.org/abs/2405.16507).
+- `CompletenessDataset`: A dataset loader for the completeness score from ["Beyond Concept Bottleneck Models: How to Make Black Boxes Intervenable?"](https://arxiv.org/abs/2401.13544).
+- `ColorMNISTDataset`: A dataset loader for MNIST Even/Odd where colors act as confounders inspired from ["Explaining Classifiers with Causal Concept Effect (CaCE)"](https://arxiv.org/abs/1907.07165) and ["Interpretable Concept-Based Memory Reasoning"](https://arxiv.org/abs/2407.15527).
+- `CelebA`: A dataset loader for CelebA dataset with attributes as concepts from ["Deep Learning Face Attributes in the Wild"](https://arxiv.org/abs/1411.7766) (ICCV 2015).
+
+**Metrics** (`pyc.metrics`):
+
+- `intervention_score`: A score measuring the effectiveness of concept interventions from ["Concept Bottleneck Models"](https://arxiv.org/pdf/2007.04612) (ICML 2020).
+- `completeness_score`: A score measuring concept completeness from ["On Completeness-aware Concept-Based Explanations in Deep Neural Networks"](https://arxiv.org/abs/1910.07969) (NeurIPS 2020).
+- `cace_score`: A score measuring causal concept effects (CaCE) from ["Explaining Classifiers with Causal Concept Effect (CaCE)"](https://arxiv.org/abs/1907.07165).
+
+## Contributing
+
+- Use the `dev` branch to write and test your contributions locally.
+- Make small commits and use ["Gitmoji"](https://gitmoji.dev/) to add emojis to your commit messages.
+- Make sure to write documentation and tests for your contributions.
+- Make sure all tests pass before submitting the pull request.
+- Submit a pull request to the `main` branch.
+
+## PyC Book
+
+You can find further reading materials and tutorials in our book [Concept-based Interpretable Deep Learning in Python](https://pyc-team.github.io/pyc-book/).
+
+## Authors
+
+- [Pietro Barbiero](http://www.pietrobarbiero.eu/), Universita' della Svizzera Italiana (CH) and University of Cambridge (UK).
+- [Gabriele Ciravegna](https://dbdmg.polito.it/dbdmg_web/gabriele-ciravegna/), Politecnico di Torino (IT).
+- [David Debot](https://www.kuleuven.be/wieiswie/en/person/00165387), KU Leuven (BE).
+- [Michelangelo Diligenti](https://docenti.unisi.it/en/diligenti), Università degli Studi di Siena (IT).
+- [Gabriele Dominici](https://pc.inf.usi.ch/team/gabriele-dominici/), Universita' della Svizzera Italiana (CH).
+- [Mateo Espinosa Zarlenga](https://hairyballtheorem.com/), University of Cambridge (UK).
+- [Francesco Giannini](https://www.francescogiannini.eu/), Scuola Normale Superiore di Pisa (IT).
+- [Giuseppe Marra](https://www.giuseppemarra.com/), KU Leuven (BE).
+
+## Licence
+
+Copyright 2024 Pietro Barbiero, Gabriele Ciravegna, David Debot, Michelangelo Diligenti, Gabriele Dominici, Mateo Espinosa Zarlenga, Francesco Giannini, Giuseppe Marra.
+
+Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at: <http://www.apache.org/licenses/LICENSE-2.0>.
+
+Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+
+See the License for the specific language governing permissions and limitations under the License.
+
+
+## Cite this library
+
+If you found this library useful for your blog post, research article or product, we would be grateful if you would cite it like this:
+
+```
+Barbiero P., Ciravegna G., Debot D., Diligenti M., 
+Dominici G., Espinosa Zarlenga M., Giannini F., Marra G. (2024).
+Concept-based Interpretable Deep Learning in Python.
+https://pyc-team.github.io/pyc-book/intro.html
+```
+
+Or use the following bibtex entry:
+
+```
+@book{pycteam2024concept,
+  title      = {Concept-based Interpretable Deep Learning in Python},
+  author     = {Pietro Barbiero, Gabriele Ciravegna, David Debot, Michelangelo Diligenti, Gabriele Dominici, Mateo Espinosa Zarlenga, Francesco Giannini, Giuseppe Marra},
+  year       = {2024},
+  url        = {https://pyc-team.github.io/pyc-book/intro.html}
+}
+```

pytorch_concepts-0.0.12/README.md

@@ -0,0 +1,102 @@
+![PyC Logo](https://raw.githubusercontent.com/pyc-team/pytorch_concepts/dev/doc/_static/img/pyc_logo.png)
+
+# PyTorch Concepts
+
+PyC (PyTorch Concepts) is a library built upon PyTorch to easily write and train Concept-Based Deep Learning models.
+
+## Low-level APIs
+
+**Concept data types** (`pyc.base`):
+
+- `AnnotatedTensor`: A subclass of `torch.Tensor` which assigns names to individual elements of each tensor dimension.
+
+**Base concept layers** (`pyc.nn.base`):
+
+- `Annotate`: A layer taking as input a common `tensor` and producing an `AnnotatedTensor` as output.
+- `LinearConceptLayer`: A layer which first applies a linear transformation to the input tensor, then it reshapes and annotates the output tensor.
+
+**Base functions** (`pyc.nn.functional`):
+
+- `intervene`: A function to intervene on concept scores.
+- `intervene_on_concept_graph`: A function to intervene on a concept adjacency matrix (it can be used to perform do-interventions).
+- `concept_embedding_mixture`: A function to generate a mixture of concept embeddings and concept predictions.
+
+## High-level APIs
+
+**Concept bottleneck layers** (`pyc.nn.bottleneck`):
+
+- `LinearConceptBottleneck`: A vanilla concept bottleneck from ["Concept Bottleneck Models"](https://arxiv.org/pdf/2007.04612) (ICML 2020).
+- `LinearConceptResidualBottleneck`: A residual bottleneck composed of a set of supervised concepts and a residual unsupervised embedding from ["Promises and Pitfalls of Black-Box Concept Learning Models"](https://arxiv.org/abs/2106.13314) (ICML 2021, workshop).
+- `ConceptEmbeddingBottleneck`: A bottleneck composed of supervised concept embeddings from ["Concept Embedding Models: Beyond the Accuracy-Explainability Trade-Off"](https://arxiv.org/abs/2209.09056) (NeurIPS 2022).
+
+## Evaluation APIs
+
+**Datasets** (`pyc.data`):
+
+- `TrafficLights`: A dataset loader for traffic scenarios representing road intersections.
+- `ToyDataset`: A toy dataset loader. XOR, Trigonometry, and Dot datasets are from ["Concept Embedding Models: Beyond the Accuracy-Explainability Trade-Off"](https://arxiv.org/abs/2209.09056) (NeurIPS 2022). The Checkmark dataset is from ["Causal Concept Embedding Models: Beyond Causal Opacity in Deep Learning"](https://arxiv.org/abs/2405.16507).
+- `CompletenessDataset`: A dataset loader for the completeness score from ["Beyond Concept Bottleneck Models: How to Make Black Boxes Intervenable?"](https://arxiv.org/abs/2401.13544).
+- `ColorMNISTDataset`: A dataset loader for MNIST Even/Odd where colors act as confounders inspired from ["Explaining Classifiers with Causal Concept Effect (CaCE)"](https://arxiv.org/abs/1907.07165) and ["Interpretable Concept-Based Memory Reasoning"](https://arxiv.org/abs/2407.15527).
+- `CelebA`: A dataset loader for CelebA dataset with attributes as concepts from ["Deep Learning Face Attributes in the Wild"](https://arxiv.org/abs/1411.7766) (ICCV 2015).
+
+**Metrics** (`pyc.metrics`):
+
+- `intervention_score`: A score measuring the effectiveness of concept interventions from ["Concept Bottleneck Models"](https://arxiv.org/pdf/2007.04612) (ICML 2020).
+- `completeness_score`: A score measuring concept completeness from ["On Completeness-aware Concept-Based Explanations in Deep Neural Networks"](https://arxiv.org/abs/1910.07969) (NeurIPS 2020).
+- `cace_score`: A score measuring causal concept effects (CaCE) from ["Explaining Classifiers with Causal Concept Effect (CaCE)"](https://arxiv.org/abs/1907.07165).
+
+## Contributing
+
+- Use the `dev` branch to write and test your contributions locally.
+- Make small commits and use ["Gitmoji"](https://gitmoji.dev/) to add emojis to your commit messages.
+- Make sure to write documentation and tests for your contributions.
+- Make sure all tests pass before submitting the pull request.
+- Submit a pull request to the `main` branch.
+
+## PyC Book
+
+You can find further reading materials and tutorials in our book [Concept-based Interpretable Deep Learning in Python](https://pyc-team.github.io/pyc-book/).
+
+## Authors
+
+- [Pietro Barbiero](http://www.pietrobarbiero.eu/), Universita' della Svizzera Italiana (CH) and University of Cambridge (UK).
+- [Gabriele Ciravegna](https://dbdmg.polito.it/dbdmg_web/gabriele-ciravegna/), Politecnico di Torino (IT).
+- [David Debot](https://www.kuleuven.be/wieiswie/en/person/00165387), KU Leuven (BE).
+- [Michelangelo Diligenti](https://docenti.unisi.it/en/diligenti), Università degli Studi di Siena (IT).
+- [Gabriele Dominici](https://pc.inf.usi.ch/team/gabriele-dominici/), Universita' della Svizzera Italiana (CH).
+- [Mateo Espinosa Zarlenga](https://hairyballtheorem.com/), University of Cambridge (UK).
+- [Francesco Giannini](https://www.francescogiannini.eu/), Scuola Normale Superiore di Pisa (IT).
+- [Giuseppe Marra](https://www.giuseppemarra.com/), KU Leuven (BE).
+
+## Licence
+
+Copyright 2024 Pietro Barbiero, Gabriele Ciravegna, David Debot, Michelangelo Diligenti, Gabriele Dominici, Mateo Espinosa Zarlenga, Francesco Giannini, Giuseppe Marra.
+
+Licensed under the Apache License, Version 2.0 (the "License"); you may not use this file except in compliance with the License. You may obtain a copy of the License at: <http://www.apache.org/licenses/LICENSE-2.0>.
+
+Unless required by applicable law or agreed to in writing, software distributed under the License is distributed on an "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
+
+See the License for the specific language governing permissions and limitations under the License.
+
+
+## Cite this library
+
+If you found this library useful for your blog post, research article or product, we would be grateful if you would cite it like this:
+
+```
+Barbiero P., Ciravegna G., Debot D., Diligenti M., 
+Dominici G., Espinosa Zarlenga M., Giannini F., Marra G. (2024).
+Concept-based Interpretable Deep Learning in Python.
+https://pyc-team.github.io/pyc-book/intro.html
+```
+
+Or use the following bibtex entry:
+
+```
+@book{pycteam2024concept,
+  title      = {Concept-based Interpretable Deep Learning in Python},
+  author     = {Pietro Barbiero, Gabriele Ciravegna, David Debot, Michelangelo Diligenti, Gabriele Dominici, Mateo Espinosa Zarlenga, Francesco Giannini, Giuseppe Marra},
+  year       = {2024},
+  url        = {https://pyc-team.github.io/pyc-book/intro.html}
+}
+```