pytomography 3.3.2__tar.gz → 3.4.0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pytomography-3.3.2 → pytomography-3.4.0}/PKG-INFO +2 -2
- pytomography-3.4.0/docs/source/notebooks/t_CardiacReorientation.ipynb +331 -0
- pytomography-3.4.0/docs/source/notebooks/t_ac225_dicom_recon.ipynb +620 -0
- pytomography-3.4.0/docs/source/notebooks/t_ac225_simind_recon.ipynb +475 -0
- pytomography-3.4.0/docs/source/notebooks/t_algorithms.ipynb +820 -0
- pytomography-3.4.0/docs/source/notebooks/t_dicomdata.ipynb +1325 -0
- pytomography-3.4.0/docs/source/notebooks/t_dicommultibed.ipynb +879 -0
- pytomography-3.4.0/docs/source/notebooks/t_dualpeak.ipynb +653 -0
- pytomography-3.4.0/docs/source/notebooks/t_siminddata.ipynb +1261 -0
- pytomography-3.4.0/docs/source/notebooks/t_spect_mc.ipynb +415 -0
- pytomography-3.4.0/docs/source/notebooks/t_spect_mc2.ipynb +284 -0
- pytomography-3.4.0/docs/source/notebooks/t_starguide.ipynb +276 -0
- pytomography-3.4.0/docs/source/notebooks/t_uncertainty_pet.ipynb +318 -0
- pytomography-3.4.0/docs/source/notebooks/t_uncertainty_spect.ipynb +884 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/usage/usage_pet.rst +11 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/usage/usage_spect.rst +5 -3
- {pytomography-3.3.2 → pytomography-3.4.0}/pyproject.toml +2 -2
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/algorithms/preconditioned_gradient_ascent.py +10 -10
- pytomography-3.4.0/src/pytomography/data/siemens.erf +4 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/SPECT/dicom.py +52 -10
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/SPECT/simind.py +7 -7
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/shared/dicom_creation.py +0 -3
- pytomography-3.4.0/src/pytomography/likelihoods/__init__.py +3 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/likelihoods/poisson_log_likelihood.py +32 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/PET/petlm_system_matrix.py +3 -3
- pytomography-3.4.0/src/pytomography/projectors/SPECT/__init__.py +2 -0
- pytomography-3.3.2/src/pytomography/projectors/SPECT/spect_system_matrix.py → pytomography-3.4.0/src/pytomography/projectors/SPECT/dualhead_system_matrix.py +134 -156
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/SPECT/__init__.py +2 -1
- pytomography-3.4.0/src/pytomography/transforms/SPECT/additive_term.py +39 -0
- pytomography-3.4.0/src/pytomography/transforms/SPECT/cutoff.py +46 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/shared/filters.py +9 -4
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/scatter.py +17 -5
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/simind_mc.py +162 -117
- pytomography-3.3.2/docs/source/notebooks/t_CardiacReorientation.ipynb +0 -331
- pytomography-3.3.2/docs/source/notebooks/t_ac225_dicom_recon.ipynb +0 -614
- pytomography-3.3.2/docs/source/notebooks/t_ac225_simind_recon.ipynb +0 -497
- pytomography-3.3.2/docs/source/notebooks/t_algorithms.ipynb +0 -826
- pytomography-3.3.2/docs/source/notebooks/t_dicomdata.ipynb +0 -1343
- pytomography-3.3.2/docs/source/notebooks/t_dicommultibed.ipynb +0 -908
- pytomography-3.3.2/docs/source/notebooks/t_dualpeak.ipynb +0 -678
- pytomography-3.3.2/docs/source/notebooks/t_siminddata.ipynb +0 -1261
- pytomography-3.3.2/docs/source/notebooks/t_spect_mc.ipynb +0 -336
- pytomography-3.3.2/docs/source/notebooks/t_spect_mc2.ipynb +0 -359
- pytomography-3.3.2/docs/source/notebooks/t_starguide.ipynb +0 -276
- pytomography-3.3.2/docs/source/notebooks/t_uncertainty_spect.ipynb +0 -890
- pytomography-3.3.2/src/pytomography/likelihoods/__init__.py +0 -3
- pytomography-3.3.2/src/pytomography/projectors/SPECT/__init__.py +0 -2
- pytomography-3.3.2/src/pytomography/transforms/SPECT/cutoff.py +0 -22
- {pytomography-3.3.2 → pytomography-3.4.0}/.github/workflows/publish-to-test-pypi.yml +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/.gitignore +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/.readthedocs.yaml +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/LICENSE +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/README.md +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/Makefile +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/make.bat +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/_static/code_toggle.js +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/_static/css/code_toggle.css +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/_static/css/custom.css +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/conf.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/data_tables/collimator_data.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/developers_guide.md +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/external_data.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/gallery.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/CT_slice.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/PT1.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/ac225_patient_dual.jpg +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/coordinate_conventions.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/emission.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/example_scanner_sm.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/figure2.jpg +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/figure4.jpg +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/figure4_left_hoz.jpg +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/figure5.jpg +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/images/pytomo_front_title.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/index.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/index2.md +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/install.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/CT_slice.png +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/conventions.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/p_simind_multiorgan.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/p_subsample_data.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/run_all_notebooks.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/script_to_generate_eta_for_petsird.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_CT_GEN3.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_CT_microct.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_GE_HDF5.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_DIP.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_LM.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_SINO.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_scat_lm.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_scat_lmTOF.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_scat_sino.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETGATE_scat_sinoTOF.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_PETSIRD.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_dicom_algorithms.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_examplesystemmatrix.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_fbp.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_plotting.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_quantitative.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/notebooks/t_siminddata_multiorgan.ipynb +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/usage/usage.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/usage/usage_ct.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/docs/source/usage/usage_dev.rst +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/algorithms/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/algorithms/dip_recon.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/algorithms/fbp.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/callbacks/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/callbacks/callback.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/callbacks/data_saving.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/adipose.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/air.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/aluminum.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/bonecortical.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/boneequivplastic.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/breast.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/lead.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/lungtissue.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/muscle.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/tissueequivplastic.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/tungsten.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/NIST_attenuation_data/water.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/collim.col +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/ct_table.csv +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/pet_colors.txt +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/pet_scanner_info.txt +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/data/simind.smc +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/CT/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/CT/dicom_ct_pd.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/clinical.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/gate.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/petsird.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/_binary.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/_dtypes.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/_ndjson.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/binary.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/ndjson.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/protocols.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/types.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/prd/yardl_types.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/PET/shared.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/SPECT/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/SPECT/attenuation_map.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/SPECT/shared.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/shared/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/shared/dicom.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/io/shared/interfile.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/likelihoods/likelihood.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/likelihoods/mse_objective.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/CT/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/CT/ct_conebeam_flatpanel_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/CT/ct_gen3_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/PET/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/PET/pet_sinogram_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/PET/pet_tof_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/PET/petlm_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/SPECT/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/SPECT/spect_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/SPECT/starguide_metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/metadata/metadata.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/priors/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/priors/nearest_neighbour.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/priors/prior.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/CT/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/CT/ct_conebeam_flatpanel_system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/CT/ct_gen3_system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/PET/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/PET/pet_sinogram_system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/SPECT/starguide_system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/shared/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/shared/kem_system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/shared/motion_correction_system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/projectors/system_matrix.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/tests/test_multi_bed_recon.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/SPECT/attenuation.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/SPECT/psf.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/shared/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/shared/kem.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/shared/motion.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/shared/spatial.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/transforms/transform.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/__init__.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/cardiac_spect.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/fourier_filters.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/misc.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/nist_data.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/plot_utils.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/spatial.py +0 -0
- {pytomography-3.3.2 → pytomography-3.4.0}/src/pytomography/utils/sss.py +0 -0
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Metadata-Version: 2.4
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Name: pytomography
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Version: 3.
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Version: 3.4.0
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Summary: Package to perform tomographic image reconstruction
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Project-URL: Homepage, https://github.com/qurit/PyTomography
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Project-URL: Bug Tracker, https://github.com/qurit/PyTomography/issues
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Requires-Dist: pandas>=2.2
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Requires-Dist: torch>=1.10.2
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