pytomography 3.2.3__tar.gz → 3.2.4__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pytomography-3.2.3 → pytomography-3.2.4}/PKG-INFO +1 -2
- {pytomography-3.2.3 → pytomography-3.2.4}/pyproject.toml +1 -1
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/system_matrix.py +7 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/.github/workflows/publish-to-test-pypi.yml +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/.gitignore +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/.readthedocs.yaml +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/LICENSE +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/README.md +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/Makefile +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/make.bat +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/_static/code_toggle.js +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/_static/css/code_toggle.css +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/_static/css/custom.css +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/conf.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/data_tables/collimator_data.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/developers_guide.md +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/external_data.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/gallery.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/CT_slice.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/PT1.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/ac225_patient_dual.jpg +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/coordinate_conventions.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/emission.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/example_scanner_sm.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/figure2.jpg +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/figure4.jpg +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/figure4_left_hoz.jpg +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/figure5.jpg +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/images/pytomo_front_title.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/index.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/index2.md +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/install.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/CT_slice.png +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/conventions.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/p_simind_multiorgan.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/p_subsample_data.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/run_all_notebooks.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/script_to_generate_eta_for_petsird.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_CT_GEN3.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_CT_microct.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_GE_HDF5.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_DIP.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_LM.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_SINO.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_scat_lm.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_scat_lmTOF.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_scat_sino.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_scat_sinoTOF.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETSIRD.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_ac225_dicom_recon.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_ac225_simind_recon.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_algorithms.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_dicom_algorithms.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_dicomdata.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_dicommultibed.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_dualpeak.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_examplesystemmatrix.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_fbp.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_plotting.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_quantitative.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_siminddata.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_siminddata_multiorgan.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_uncertainty_spect.ipynb +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/usage/usage.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/usage/usage_ct.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/usage/usage_dev.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/usage/usage_pet.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/docs/source/usage/usage_spect.rst +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/algorithms/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/algorithms/dip_recon.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/algorithms/fbp.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/algorithms/preconditioned_gradient_ascent.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/callbacks/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/callbacks/callback.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/callbacks/data_saving.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/adipose.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/air.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/aluminum.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/bonecortical.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/boneequivplastic.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/breast.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/lead.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/lungtissue.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/muscle.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/tissueequivplastic.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/tungsten.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/NIST_attenuation_data/water.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/collim.col +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/ct_table.csv +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/pet_colors.txt +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/pet_scanner_info.txt +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/data/simind.smc +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/CT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/CT/dicom_ct_pd.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/clinical.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/gate.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/petsird.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/_binary.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/_dtypes.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/_ndjson.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/binary.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/ndjson.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/protocols.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/types.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/prd/yardl_types.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/PET/shared.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/SPECT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/SPECT/attenuation_map.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/SPECT/dicom.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/SPECT/shared.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/SPECT/simind.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/shared/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/shared/dicom.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/shared/dicom_creation.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/io/shared/interfile.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/likelihoods/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/likelihoods/likelihood.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/likelihoods/mse_objective.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/likelihoods/poisson_log_likelihood.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/CT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/CT/ct_conebeam_flatpanel_metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/CT/ct_gen3_metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/PET/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/PET/pet_sinogram_metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/PET/pet_tof_metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/PET/petlm_metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/SPECT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/SPECT/spect_metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/metadata/metadata.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/priors/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/priors/nearest_neighbour.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/priors/prior.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/CT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/CT/ct_conebeam_flatpanel_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/CT/ct_gen3_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/PET/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/PET/pet_sinogram_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/PET/petlm_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/SPECT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/SPECT/spect_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/shared/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/shared/kem_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/projectors/shared/motion_correction_system_matrix.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/tests/test_multi_bed_recon.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/SPECT/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/SPECT/attenuation.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/SPECT/cutoff.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/SPECT/psf.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/shared/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/shared/filters.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/shared/kem.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/shared/motion.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/shared/spatial.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/transforms/transform.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/__init__.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/fourier_filters.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/misc.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/nist_data.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/plot_utils.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/scatter.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/spatial.py +0 -0
- {pytomography-3.2.3 → pytomography-3.2.4}/src/pytomography/utils/sss.py +0 -0
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Summary: Package to perform tomographic image reconstruction
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from typing import Sequence
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2
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import abc
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import torch
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import pytomography
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@@ -202,6 +203,12 @@ class ExtendedSystemMatrix(SystemMatrix):
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) -> torch.tensor:
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return self.system_matrices[0].get_projection_subset(projections, subset_idx)
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+
def get_weighting_subset(
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self,
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subset_idx: int
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) -> torch.tensor:
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return self.system_matrices[0].get_weighting_subset(subset_idx)
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def compute_normalization_factor(self, subset_idx: int | None = None):
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r"""Function called by reconstruction algorithms to get the normalization factor :math:`H' = \sum_n v_n^T \otimes A_n^T H_n^T B_n^T` 1.
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{pytomography-3.2.3 → pytomography-3.2.4}/docs/source/notebooks/t_PETGATE_scat_sinoTOF.ipynb
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