pythonradex 1.0.0__tar.gz → 1.0.2__tar.gz

pythonradex-1.0.2/.gitignore

@@ -0,0 +1,120 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+local_settings.py
+
+# Flask stuff:
+instance/
+.webassets-cache
+
+# Scrapy stuff:
+.scrapy
+
+# Sphinx documentation
+docs/_build/
+#Gianni added:
+docs/__static/
+docs/_templates/
+
+
+# PyBuilder
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# pyenv
+.python-version
+
+# celery beat schedule file
+celerybeat-schedule
+
+# SageMath parsed files
+*.sage.py
+
+# dotenv
+.env
+
+# virtualenv
+.venv
+venv/
+ENV/
+virt_env*/
+
+# Spyder project settings
+.spyderproject
+.spyproject
+
+# Rope project settings
+.ropeproject
+
+# mkdocs documentation
+/site
+
+# mypy
+.mypy_cache/
+
+# Gianni stuff
+tests/RADEX_test_cases/radex.in
+tests/Radex
+manual_tests_and_benchmarks/lime/lime-master
+manual_tests_and_benchmarks/lime/template_model.c
+manual_tests_and_benchmarks/molpop-cep_benchmark/Gianni_models/*.out
+manual_tests_and_benchmarks/molpop-cep_benchmark/molpop
+manual_tests_and_benchmarks/molpop-cep_benchmark/molpop-cep-master
+manual_tests_and_benchmarks/benchmarking_vs_RADEX_and_LIME/*.fits
+manual_tests_and_benchmarks/performance_tests/radex_test_performance.out
+documents
+**/radex.out
+.pytest_cache

pythonradex-1.0.2/PKG-INFO

@@ -0,0 +1,28 @@
+Metadata-Version: 2.4
+Name: pythonradex
+Version: 1.0.2
+Summary: 1D non-LTE radiative transfer
+Project-URL: Documentation, https://pythonradex.readthedocs.io/en/latest/
+Project-URL: Issues, https://github.com/gica3618/pythonradex/issues
+Project-URL: Source, https://github.com/gica3618/pythonradex
+Author-email: Gianni Cataldi <cataldi.gia@gmail.com>
+License-Expression: MIT
+License-File: LICENSE.txt
+Keywords: non-LTE,radex,radiative transfer
+Classifier: Development Status :: 4 - Beta
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Requires-Python: >=3.10
+Requires-Dist: numba>=0.61.0
+Requires-Dist: numpy>=2.0
+Requires-Dist: scipy>=1.14
+Description-Content-Type: text/plain
+
+pythonradex solves the 1D non-LTE radiative transfer for a homogeneous medium. It is a tool to quickly estimate the radiation from an astrophysical gas. It also provides a convenient function to read data files from the LAMDA database. pythonradex is a python re-implementation of the RADEX code, with additional functionality not included in RADEX (treatment of overlapping lines, treatment of dust continuum, output of spectra,...)
+
+For more details, please refer to the documentation: http://pythonradex.readthedocs.io/
+
+pythonradex is written and maintained by Gianni Cataldi

pythonradex-1.0.2/docs/installation.rst

@@ -0,0 +1,10 @@
+Installation
+=================
+
+``pythonradex`` requires python version >=3.10. ``pythonradex`` is available on `PyPi <https://pypi.org/project/pythonradex/>`_. It can be installed with the ``pip`` command as follows:
+
+* ``pip install pythonradex``
+
+If you have any trouble installing, please raise an issue `here <https://github.com/gica3618/pythonradex/issues>`_.
+
+The ``pythonradex`` code is publicly available on `github <https://github.com/gica3618/pythonradex>`_.

pythonradex-1.0.2/pyproject.toml

@@ -0,0 +1,30 @@
+[build-system]
+requires = ["hatchling"]
+build-backend = "hatchling.build"
+
+[project]
+name = "pythonradex"
+# be careful, PyPi will return "400 bad request" error if you delete your project on PyPi and then try to publish again with a previously published version!
+version = "1.0.2"
+description = '1D non-LTE radiative transfer'
+readme = "README.txt"
+requires-python = ">=3.10"
+license = "MIT"
+keywords = ['radiative transfer', 'radex', 'non-LTE']
+authors = [
+  { name = "Gianni Cataldi", email = "cataldi.gia@gmail.com" },
+]
+classifiers = [
+  "Development Status :: 4 - Beta",
+  "Programming Language :: Python",
+  "Programming Language :: Python :: 3.10",
+  "Programming Language :: Python :: 3.11",
+  "Programming Language :: Python :: 3.12",
+  "Programming Language :: Python :: 3.13",
+]
+dependencies = ['scipy>=1.14','numpy>=2.0','numba>=0.61.0']
+
+[project.urls]
+Documentation = "https://pythonradex.readthedocs.io/en/latest/"
+Issues = "https://github.com/gica3618/pythonradex/issues"
+Source = "https://github.com/gica3618/pythonradex"

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin124_N1e+12_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  124.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354    9.473  1.398E-05  2.967E-05  1.891E-01  7.628E-01  3.158E-05  4.849E-11
+2      -- 1         62.5    809.3420    370.4151   20.676  1.344E-06  9.415E-06  4.815E-02  1.891E-01  1.002E-05  6.843E-11
+2      -- 0         62.5   1301.5026    230.3433   14.287  3.114E-13  2.487E-13  4.815E-02  7.628E-01  2.647E-13  7.517E-18

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin124_N1e+12_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  124.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  138.649  5.123E-07  6.515E-05  4.144E-01  1.638E-01  6.935E-05  1.065E-10
+2      -- 1         62.5    809.3420    370.4151   78.816  1.353E-06  8.249E-05  4.219E-01  4.144E-01  8.781E-05  5.995E-10
+2      -- 0         62.5   1301.5026    230.3433   94.186  3.282E-14  2.181E-12  4.219E-01  1.638E-01  2.322E-12  6.593E-17

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin124_N1e+15_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  124.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+15
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354    9.473  1.398E-02  2.946E-02  1.891E-01  7.628E-01  3.136E-02  4.815E-08
+2      -- 1         62.5    809.3420    370.4151   20.676  1.344E-03  9.409E-03  4.815E-02  1.891E-01  1.002E-02  6.838E-08
+2      -- 0         62.5   1301.5026    230.3433   14.287  3.114E-10  2.487E-10  4.815E-02  7.628E-01  2.647E-10  7.516E-15

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin124_N1e+15_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  124.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+15
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  138.649  5.123E-04  6.513E-02  4.144E-01  1.638E-01  6.934E-02  1.064E-07
+2      -- 1         62.5    809.3420    370.4151   78.816  1.353E-03  8.244E-02  4.219E-01  4.144E-01  8.775E-02  5.991E-07
+2      -- 0         62.5   1301.5026    230.3433   94.186  3.282E-11  2.179E-09  4.219E-01  1.638E-01  2.319E-09  6.585E-14

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin124_N1e+20_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  124.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+20
+* Line width     [km/s]:    1.000
+Calculation finished in   36 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  106.291  6.513E+01  9.491E+01  3.931E-01  1.637E-01  1.010E+02  1.551E-04
+2      -- 1         62.5    809.3420    370.4151   99.339  1.068E+02  8.118E+01  4.432E-01  3.931E-01  8.642E+01  5.900E-04
+2      -- 0         62.5   1301.5026    230.3433  101.858  3.102E-06  2.289E-04  4.432E-01  1.637E-01  2.437E-04  6.918E-09

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin124_N1e+20_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  124.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+20
+* Line width     [km/s]:    1.000
+Calculation finished in   26 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  123.789  5.341E+01  1.123E+02  3.816E-01  1.539E-01  1.196E+02  1.836E-04
+2      -- 1         62.5    809.3420    370.4151  123.561  8.637E+01  1.052E+02  4.644E-01  3.816E-01  1.119E+02  7.643E-04
+2      -- 0         62.5   1301.5026    230.3433  123.647  2.524E-06  2.399E-04  4.644E-01  1.539E-01  2.553E-04  7.250E-09

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin144_N1e+12_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  144.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354    9.771  1.361E-05  3.141E-05  2.001E-01  7.481E-01  3.343E-05  5.133E-11
+2      -- 1         62.5    809.3420    370.4151   20.851  1.418E-06  1.012E-05  5.177E-02  2.001E-01  1.078E-05  7.357E-11
+2      -- 0         62.5   1301.5026    230.3433   14.593  3.050E-13  2.673E-13  5.177E-02  7.481E-01  2.846E-13  8.080E-18

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin144_N1e+12_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  144.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  168.905  4.079E-07  6.419E-05  4.083E-01  1.565E-01  6.833E-05  1.049E-10
+2      -- 1         62.5    809.3420    370.4151   86.916  1.234E-06  8.510E-05  4.352E-01  4.083E-01  9.059E-05  6.185E-10
+2      -- 0         62.5   1301.5026    230.3433  106.457  2.872E-14  2.250E-12  4.352E-01  1.565E-01  2.396E-12  6.802E-17

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin144_N1e+15_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  144.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+15
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354    9.771  1.361E-02  3.120E-02  2.001E-01  7.481E-01  3.321E-02  5.098E-08
+2      -- 1         62.5    809.3420    370.4151   20.851  1.418E-03  1.012E-02  5.177E-02  2.001E-01  1.077E-02  7.352E-08
+2      -- 0         62.5   1301.5026    230.3433   14.593  3.050E-10  2.674E-10  5.177E-02  7.481E-01  2.846E-10  8.081E-15

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin144_N1e+15_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  144.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+15
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  168.905  4.079E-04  6.418E-02  4.083E-01  1.565E-01  6.832E-02  1.049E-07
+2      -- 1         62.5    809.3420    370.4151   86.916  1.234E-03  8.505E-02  4.352E-01  4.083E-01  9.054E-02  6.181E-07
+2      -- 0         62.5   1301.5026    230.3433  106.457  2.872E-11  2.248E-09  4.352E-01  1.565E-01  2.393E-09  6.793E-14

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin144_N1e+20_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  144.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+20
+* Line width     [km/s]:    1.000
+Calculation finished in   36 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  117.943  5.727E+01  1.065E+02  3.880E-01  1.580E-01  1.134E+02  1.741E-04
+2      -- 1         62.5    809.3420    370.4151  109.800  9.700E+01  9.152E+01  4.540E-01  3.880E-01  9.742E+01  6.652E-04
+2      -- 0         62.5   1301.5026    230.3433  112.744  2.779E-06  2.345E-04  4.540E-01  1.580E-01  2.496E-04  7.086E-09

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin144_N1e+20_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:  144.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+20
+* Line width     [km/s]:    1.000
+Calculation finished in   27 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354  143.650  4.466E+01  1.322E+02  3.754E-01  1.475E-01  1.407E+02  2.160E-04
+2      -- 1         62.5    809.3420    370.4151  143.321  7.477E+01  1.248E+02  4.771E-01  3.754E-01  1.328E+02  9.068E-04
+2      -- 0         62.5   1301.5026    230.3433  143.445  2.153E-06  2.464E-04  4.771E-01  1.475E-01  2.623E-04  7.447E-09

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin25_N1e+12_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:   25.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354    5.713  1.862E-05  7.082E-06  4.553E-02  9.476E-01  7.539E-06  1.157E-11
+2      -- 1         62.5    809.3420    370.4151   16.196  3.473E-07  1.349E-06  6.896E-03  4.553E-02  1.436E-06  9.801E-12
+2      -- 0         62.5   1301.5026    230.3433    9.562  3.912E-13  3.561E-14  6.896E-03  9.476E-01  3.791E-14  1.076E-18

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin25_N1e+12_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:   25.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354   21.024  5.915E-06  6.729E-05  4.281E-01  4.389E-01  7.163E-05  1.100E-10
+2      -- 1         62.5    809.3420    370.4151   23.121  2.923E-06  2.600E-05  1.330E-01  4.281E-01  2.768E-05  1.890E-10
+2      -- 0         62.5   1301.5026    230.3433   22.281  1.705E-13  6.867E-13  1.330E-01  4.389E-01  7.310E-13  2.075E-17

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin25_N1e+15_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:   25.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+15
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354    5.713  1.862E-02  7.017E-03  4.553E-02  9.476E-01  7.470E-03  1.147E-08
+2      -- 1         62.5    809.3420    370.4151   16.196  3.473E-04  1.348E-03  6.896E-03  4.553E-02  1.435E-03  9.799E-09
+2      -- 0         62.5   1301.5026    230.3433    9.562  3.912E-10  3.562E-11  6.896E-03  9.476E-01  3.792E-11  1.076E-15

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin25_N1e+15_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:   25.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+15
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354   21.024  5.915E-03  6.709E-02  4.281E-01  4.389E-01  7.142E-02  1.097E-07
+2      -- 1         62.5    809.3420    370.4151   23.121  2.923E-03  2.597E-02  1.330E-01  4.281E-01  2.764E-02  1.887E-07
+2      -- 0         62.5   1301.5026    230.3433   22.281  1.705E-10  6.868E-10  1.330E-01  4.389E-01  7.311E-10  2.076E-14

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin25_N1e+20_He_1e+02_e_1_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:   25.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+00
+* Density of He  [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+20
+* Line width     [km/s]:    1.000
+Calculation finished in   33 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354   24.779  4.808E+02  1.481E+01  4.531E-01  3.918E-01  1.577E+01  2.421E-05
+2      -- 1         62.5    809.3420    370.4151   24.544  3.020E+02  1.004E+01  1.551E-01  4.531E-01  1.069E+01  7.299E-05
+2      -- 0         62.5   1301.5026    230.3433   24.632  1.491E-05  8.012E-05  1.551E-01  3.918E-01  8.529E-05  2.422E-09

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_c_Tkin25_N1e+20_He_1e+04_e_1e+02_ortho-H2_1_para-H2_1.out

@@ -0,0 +1,18 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/c.dat                                                   
+* T(kin)            [K]:   25.000
+* Density of H2  [cm-3]:  2.000E+00
+* Density of pH2 [cm-3]:  1.000E+00
+* Density of oH2 [cm-3]:  1.000E+00
+* Density of e-  [cm-3]:  1.000E+02
+* Density of He  [cm-3]:  1.000E+04
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+20
+* Line width     [km/s]:    1.000
+Calculation finished in   18 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0         23.6    492.1607    609.1354   24.998  4.737E+02  1.502E+01  4.525E-01  3.881E-01  1.598E+01  2.454E-05
+2      -- 1         62.5    809.3420    370.4151   24.995  2.994E+02  1.041E+01  1.594E-01  4.525E-01  1.108E+01  7.568E-05
+2      -- 0         62.5   1301.5026    230.3433   24.996  1.472E-05  8.234E-05  1.594E-01  3.881E-01  8.765E-05  2.489E-09

pythonradex-1.0.2/tests/RADEX_test_cases/radex_Expandingsphere_co_Tkin123_N1e+12_ortho-H2_1e+02_para-H2_1e+03.out

@@ -0,0 +1,53 @@
+* Radex version        : 30nov2011
+* Geometry             : Expanding sphere
+* Molecular data file  : ../../tests/LAMDA_files/co.dat                                                  
+* T(kin)            [K]:  123.000
+* Density of H2  [cm-3]:  1.100E+03
+* Density of pH2 [cm-3]:  1.000E+03
+* Density of oH2 [cm-3]:  1.000E+02
+* T(background)     [K]:    2.730
+* Column density [cm-2]:  1.000E+12
+* Line width     [km/s]:    1.000
+Calculation finished in   10 iterations
+      LINE         E_UP       FREQ        WAVEL     T_EX      TAU        T_R       POP        POP       FLUX        FLUX
+                   (K)        (GHz)       (um)      (K)                  (K)        UP        LOW      (K*km/s) (erg/cm2/s)
+1      -- 0          5.5    115.2712   2600.7576 -203.491 -6.296E-06  1.304E-03  4.956E-01  1.608E-01  1.388E-03  2.738E-11
+2      -- 1         16.6    230.5380   1300.4037    9.285  3.267E-04  1.512E-03  2.509E-01  4.956E-01  1.610E-03  2.541E-10
+3      -- 2         33.2    345.7960    866.9634   10.202  1.716E-04  6.903E-04  6.904E-02  2.509E-01  7.348E-04  3.913E-10
+4      -- 3         55.3    461.0408    650.2515   13.542  4.498E-05  2.410E-04  1.733E-02  6.904E-02  2.566E-04  3.238E-10
+5      -- 4         83.0    576.2679    520.2310   17.950  1.069E-05  8.060E-05  4.536E-03  1.733E-02  8.580E-05  2.115E-10
+6      -- 5        116.2    691.4731    433.5562   23.246  2.653E-06  2.778E-05  1.286E-03  4.536E-03  2.957E-05  1.259E-10
+7      -- 6        154.9    806.6518    371.6504   27.531  7.355E-07  9.245E-06  3.637E-04  1.286E-03  9.841E-06  6.652E-11
+8      -- 7        199.1    921.7997    325.2252   32.668  2.019E-07  3.107E-06  1.064E-04  3.637E-04  3.308E-06  3.337E-11
+9      -- 8        248.9   1036.9124    289.1203   36.291  5.876E-08  9.945E-07  3.018E-05  1.064E-04  1.059E-06  1.520E-11
+10     -- 9        304.2   1151.9855    260.2398   41.001  1.637E-08  3.174E-07  8.661E-06  3.018E-05  3.378E-07  6.651E-12
+11     -- 10       365.0   1267.0145    236.6133   45.475  4.638E-09  1.004E-07  2.491E-06  8.661E-06  1.069E-07  2.800E-12
+12     -- 11       431.3   1381.9951    216.9273   47.791  1.345E-09  2.968E-08  6.759E-07  2.491E-06  3.159E-08  1.074E-12
+13     -- 12       503.1   1496.9229    200.2725   50.998  3.643E-10  8.468E-09  1.784E-07  6.759E-07  9.014E-09  3.894E-13
+14     -- 13       580.5   1611.7935    185.9993   55.951  9.457E-11  2.451E-09  4.809E-08  1.784E-07  2.609E-09  1.407E-13
+15     -- 14       663.4   1726.6025    173.6314   49.505  2.741E-11  5.243E-10  9.641E-09  4.809E-08  5.581E-10  3.699E-14
+16     -- 15       751.7   1841.3455    162.8116   70.806  4.780E-12  1.701E-10  2.946E-09  9.641E-09  1.811E-10  1.456E-14
+17     -- 16       845.6   1956.0181    153.2667   59.885  1.607E-12  3.975E-11  6.516E-10  2.946E-09  4.232E-11  4.078E-15
+18     -- 17       945.0   2070.6160    144.7842   60.030  3.600E-13  8.448E-12  1.316E-10  6.516E-10  8.993E-12  1.028E-15
+19     -- 18      1049.8   2185.1347    137.1963   65.003  7.129E-14  1.860E-12  2.763E-11  1.316E-10  1.980E-12  2.660E-16
+20     -- 19      1160.2   2299.5698    130.3689   66.024  1.503E-14  3.829E-13  5.460E-12  2.763E-11  4.076E-13  6.382E-17
+21     -- 20      1276.0   2413.9171    124.1934   67.333  2.973E-15  7.570E-14  1.025E-12  5.460E-12  8.058E-14  1.460E-17
+22     -- 21      1397.4   2528.1721    118.5807   68.979  5.566E-16  1.401E-14  1.847E-13  1.025E-12  1.492E-14  3.104E-18
+23     -- 22      1524.2   2642.3303    113.4576   70.362  1.002E-16  2.780E-15  3.181E-14  1.847E-13  2.960E-15  7.032E-19
+24     -- 23      1656.5   2756.3876    108.7628   71.938  1.718E-17  0.000E+00  5.274E-15  3.181E-14  0.000E+00  0.000E+00
+25     -- 24      1794.2   2870.3394    104.4450   73.144  2.838E-18  1.678E-20  8.348E-16  5.274E-15  1.786E-20  5.439E-24
+26     -- 25      1937.4   2984.1815    100.4605   73.638  4.485E-19  2.358E-21  1.241E-16  8.348E-16  2.510E-21  8.589E-25
+27     -- 26      2086.1   3097.9094     96.7725   75.043  6.620E-20  3.315E-22  1.775E-17  1.241E-16  3.528E-22  1.351E-25
+28     -- 27      2240.2   3211.5188     93.3491   74.880  9.467E-21  4.663E-23  2.349E-18  1.775E-17  4.964E-23  2.117E-26
+29     -- 28      2399.8   3325.0053     90.1630   75.232  1.246E-21  6.567E-24  2.915E-19  2.349E-18  6.990E-24  3.309E-27
+30     -- 29      2564.8   3438.3646     87.1904   65.147  1.595E-22  9.256E-25  2.394E-20  2.915E-19  9.853E-25  5.158E-28
+31     -- 30      2735.3   3551.5924     84.4107    0.000  8.353E-24  1.306E-25  1.000E-20  2.394E-20  1.390E-25  8.022E-29
+32     -- 31      2911.2   3664.6842     81.8058    0.000  1.777E-25  1.846E-26  1.000E-20  1.000E-20  1.965E-26  1.245E-29
+33     -- 32      3092.4   3777.6357     79.3598    0.000  1.697E-25  2.612E-27  1.000E-20  1.000E-20  2.781E-27  1.931E-30
+34     -- 33      3279.2   3890.4427     77.0587    0.000  1.621E-25  3.703E-28  1.000E-20  1.000E-20  3.942E-28  2.989E-31
+35     -- 34      3471.3   4003.1008     74.8901    0.000  1.549E-25  5.258E-29  1.000E-20  1.000E-20  5.597E-29  4.624E-32
+36     -- 35      3668.8   4115.6056     72.8429    0.000  1.481E-25  7.481E-30  1.000E-20  1.000E-20  7.963E-30  7.149E-33
+37     -- 36      3871.7   4227.9528     70.9072    0.000  1.416E-25  1.066E-30  1.000E-20  1.000E-20  1.135E-30  1.105E-33
+38     -- 37      4080.0   4340.1381     69.0744    0.000  1.353E-25  1.523E-31  1.000E-20  1.000E-20  1.621E-31  1.707E-34
+39     -- 38      4293.6   4452.1571     67.3365    0.000  1.294E-25  2.181E-32  1.000E-20  1.000E-20  2.321E-32  2.638E-35
+40     -- 39      4512.7   4564.0056     65.6863    0.000  1.237E-25  3.129E-33  1.000E-20  1.000E-20  3.331E-33  4.078E-36