pythonflex 0.2.4__tar.gz → 0.3.1__tar.gz

{pythonflex-0.2.4 → pythonflex-0.3.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pythonflex
-Version: 0.2.4
+Version: 0.3.1
 Summary: pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data.
 Author-email: Yasir Demirtaş <tyasird@hotmail.com>
 Requires-Python: >=3.9

{pythonflex-0.2.4 → pythonflex-0.3.1}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pythonflex"
-version = "0.2.4"
+version = "0.3.1"
 description = "pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data."
 readme = "README.md"
 authors = [
@@ -45,6 +45,12 @@ build-backend = "hatchling.build"
 [tool.ruff]
 ignore = ["F541"]
 
+[tool.setuptools]
+include-package-data = true
+
+[tool.setuptools.packages.find]
+include = ["pythonflex*"]
+
 [tool.setuptools.package-data]
 pythonflex = ["data/**/*.parquet", "data/**/*.csv", "data/**/*.tsv", "data/**/*.json", "data/**/*.txt", "data/**/*.xlsx", "data/**/*.xls", "data/**/*.h5", "data/**/*.hdf5"]
 

{pythonflex-0.2.4 → pythonflex-0.3.1}/src/pythonflex/__init__.py

@@ -1,18 +1,20 @@
-
-from .logging_config import log
-from .utils import dsave, dload
-from .preprocessing import get_example_data_path, load_datasets,  get_common_genes, filter_matrix_by_genes, load_gold_standard, filter_duplicate_terms
-from .analysis import initialize, pra, pra_percomplex, fast_corr, perform_corr, is_symmetric, binary, has_mirror_of_first_pair, convert_full_to_half_matrix, drop_mirror_pairs, quick_sort, complex_contributions, save_results_to_csv, update_matploblib_config
-from .plotting import (
-    adjust_text_positions, plot_precision_recall_curve, plot_percomplex_scatter,
-    plot_percomplex_scatter_bysize, plot_complex_contributions, plot_significant_complexes, plot_auc_scores
-)
-
-__all__ = [ "log", "get_example_data_path", "fast_corr",
-    "initialize", "dsave", "dload", "load_datasets", "get_common_genes",
-    "filter_matrix_by_genes", "load_gold_standard", "filter_duplicate_terms", "pra", "pra_percomplex",
-    "perform_corr", "is_symmetric", "binary", "has_mirror_of_first_pair", "convert_full_to_half_matrix",
-    "drop_mirror_pairs", "quick_sort", "complex_contributions", "adjust_text_positions", "plot_precision_recall_curve",
-    "plot_percomplex_scatter", "plot_percomplex_scatter_bysize", "plot_complex_contributions",
-    "plot_significant_complexes", "plot_auc_scores", "save_results_to_csv", "update_matploblib_config"
-]
+from .logging_config import log
+from .utils import dsave, dload
+from .preprocessing import get_example_data_path, load_datasets,  get_common_genes, filter_matrix_by_genes, load_gold_standard, filter_duplicate_terms
+from .analysis import initialize, pra, pra_percomplex, fast_corr, perform_corr, is_symmetric, binary, has_mirror_of_first_pair, convert_full_to_half_matrix, drop_mirror_pairs, quick_sort, complex_contributions, save_results_to_csv, update_matploblib_config, mpr_prepare
+from .plotting import (
+    adjust_text_positions, plot_precision_recall_curve, plot_percomplex_scatter,
+    plot_percomplex_scatter_bysize, plot_complex_contributions, plot_significant_complexes, plot_auc_scores,
+    plot_mpr_tp, plot_mpr_complexes, plot_mpr_tp_multi, plot_mpr_complexes_multi
+)
+
+__all__ = [ "log", "get_example_data_path", "fast_corr",
+    "initialize", "dsave", "dload", "load_datasets", "get_common_genes",
+    "filter_matrix_by_genes", "load_gold_standard", "filter_duplicate_terms", "pra", "pra_percomplex",
+    "perform_corr", "is_symmetric", "binary", "has_mirror_of_first_pair", "convert_full_to_half_matrix",
+    "drop_mirror_pairs", "quick_sort", "complex_contributions", "adjust_text_positions", "plot_precision_recall_curve",
+    "plot_percomplex_scatter", "plot_percomplex_scatter_bysize", "plot_complex_contributions",
+    "plot_significant_complexes", "plot_auc_scores", "save_results_to_csv", "update_matploblib_config",
+    "mpr_prepare", "plot_mpr_tp", "plot_mpr_complexes",
+    "plot_mpr_tp_multi", "plot_mpr_complexes_multi"
+]