pythonflex 0.2.1__tar.gz → 0.2.2__tar.gz

{pythonflex-0.2.1 → pythonflex-0.2.2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pythonflex
-Version: 0.2.1
+Version: 0.2.2
 Summary: pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data.
 Author-email: Yasir Demirtaş <tyasird@hotmail.com>
 Requires-Python: >=3.9

{pythonflex-0.2.1 → pythonflex-0.2.2}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pythonflex"
-version = "0.2.1"
+version = "0.2.2"
 description = "pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data."
 readme = "README.md"
 authors = [

{pythonflex-0.2.1 → pythonflex-0.2.2}/src/pythonflex/utils.py

@@ -97,21 +97,28 @@ def dload(category, name=None, path=None):  # 'path' ignored for compatibility
                 os.remove(full_path)  # Delete corrupted file
         return out
 
-    # Load specific name (try extensions in order)
-    for ext in VALID_EXTS:
+    # Load specific name (try extensions in order - PREFER PARQUET over FEATHER)
+    # Check parquet first since it's more reliable for complex data
+    preferred_order = [".parquet", ".feather", ".npy", ".pkl"]
+    
+    for ext in preferred_order:
+        if ext not in VALID_EXTS:
+            continue
         target = _safe_path(category, name, ext)
         if os.path.exists(target):
             try:
                 if ext == ".feather":
                     return pd.read_feather(target)
-                elif ext == ".parquet":  # ADDED
+                elif ext == ".parquet":
                     return pd.read_parquet(target)
                 elif ext == ".npy":
                     return np.load(target, mmap_mode="r")  # MMap for perf
                 elif ext == ".pkl":
                     return joblib.load(target, mmap_mode="r")  # MMap for perf
-            except (EOFError, ValueError, OSError):
-                print(f"Warning: '{target}' is corrupted. Deleting and returning {{}}...")
-                os.remove(target)
-                return {}
+            except (EOFError, ValueError, OSError) as e:
+                print(f"Warning: '{target}' is corrupted ({e}). Trying next format...")
+                os.remove(target)  # Delete corrupted file
+                continue  # Try next format instead of returning {}
+    
+    print(f"Warning: No valid file found for {category}/{name}")
     return {}