pythonflex 0.1.3__tar.gz → 0.1.5__tar.gz

{pythonflex-0.1.3 → pythonflex-0.1.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pythonflex
-Version: 0.1.3
+Version: 0.1.5
 Summary: pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data.
 Author-email: Yasir Demirtaş <tyasird@hotmail.com>
 Requires-Python: >=3.9

{pythonflex-0.1.3 → pythonflex-0.1.5}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pythonflex"
-version = "0.1.3"
+version = "0.1.5"
 description = "pythonFLEX is a benchmarking toolkit for evaluating CRISPR screen results against biological gold standards. The toolkit computes gene-level and complex-level performance metrics, helping researchers systematically assess the biological relevance and resolution of their CRISPR screening data."
 readme = "README.md"
 authors = [

{pythonflex-0.1.3 → pythonflex-0.1.5}/src/pythonflex/analysis.py

@@ -72,7 +72,7 @@ def initialize(config={}):
     log.set_visible_levels(visible_levels)
 
     log.info("******************************************************************")
-    log.info("🧬 pyFLEX: Systematic CRISPR screen benchmarking framework")
+    log.info("🧬 pythonFLEX: Systematic CRISPR screen benchmarking framework")
     log.info("******************************************************************")
     log.started("Initialization")
 
@@ -91,7 +91,7 @@ def initialize(config={}):
     os.makedirs(output_folder, exist_ok=True)
     log.progress(f"Output folder '{output_folder}' ensured to exist.")
     log.done("Initialization completed. ")
-    tprint("pyFLEX",font="standard")
+    tprint("FLEX",font="standard")
 
 
 

{pythonflex-0.1.3 → pythonflex-0.1.5}/src/pythonflex/logging_config.py

@@ -3,7 +3,7 @@ import emoji
 from loguru import logger as global_logger
 from typing import TYPE_CHECKING
 
-pkg_logger = global_logger.bind(name="pyflex")
+pkg_logger = global_logger.bind(name="pythonflex")
 
 
 class CustomLogger:

{pythonflex-0.1.3 → pythonflex-0.1.5}/src/pythonflex/preprocessing.py

@@ -10,7 +10,7 @@ tqdm.pandas()
 
 
 def get_example_data_path(filename: str):
-    return resources.files("pyflex.data").joinpath("dataset").joinpath(filename)
+    return resources.files("pythonflex.data").joinpath("dataset").joinpath(filename)
 
 
 def _load_file(filepath, ext):
@@ -151,7 +151,7 @@ def load_gold_standard():
     if gold_standard_source in gold_standard_files:
         # Load predefined gold standard from package resources
         filename = gold_standard_files[gold_standard_source]
-        filename_path = resources.files("pyflex.data").joinpath(filename)
+        filename_path = resources.files("pythonflex.data").joinpath(filename)
         if not filename_path.exists():  # Check if the file exists
             raise ValueError(f"Invalid Gold Standard type: {gold_standard_source}. File not found.")
         terms = pd.read_parquet(filename_path)  # type: ignore