python-casacore 3.5.1__tar.gz → 3.6.1__tar.gz

python_casacore-3.6.1/.coveragerc

@@ -0,0 +1,6 @@
+[report]
+omit =  
+    */python?.?/*
+    */site-packages/nose/*
+    *__init__*
+    */tests/*

python_casacore-3.6.1/.dockerignore

@@ -0,0 +1,5 @@
+.venv*/
+venv/
+.virtualenv*/
+build/
+*.egg-info/

python_casacore-3.6.1/CHANGELOG.md

@@ -0,0 +1,109 @@
+# 3.6.1
+
+This version as a binary wheel ships with underlying casacore v3.6.1.
+
+The build system has seen a major upgrade.
+
+
+# 3.5.2
+
+The binary wheels have now been built with `-DPORTABLE=True`. This should fix issues with Dysco crashing on some platforms (due to missing AVX instructions). Otherwise nothing has changed.
+
+
+# 3.5.1
+
+The binary wheel for python 3.10 is now based on numpy 1.22.4. Otherwise nothing has changed.
+
+
+# 3.5.0
+
+This version as a binary wheel ships with underlying casacore v3.5.0
+
+Binary wheels are now `manylinux2014` which will only work with pip >= 19.3
+
+The license has changed to LGPL.
+
+
+# 3.4.0
+
+This version as a binary wheel ships with underlying casacore v3.4.0
+
+There are no changes to python-casacore itself
+
+
+# 3.3.0
+
+This version as a binary wheel ships with underlying casacore v3.3.0.
+
+Ony a few changes in python-casacore itself:
+
+ - Expose complete MS and subtable definitions (#183)
+ - Miminum casacore version is now 3.2.0 (#195)
+ - Several improvements to library handling in setup.py (#194)
+
+
+# 3.2.0
+
+This version as a binary wheel ships with underlying casacore v3.2.0.
+
+Changes are only in the underlying casacore.
+
+
+# 3.1.1
+
+This is the first release that will be supplied as binary wheels
+(manylinux2010). Note that you need pip > 10.x to use manylinux2010 wheels.
+If you don't use the binary wheel and unicode is important to you, use
+casacore 3.1.1. Note that we skipped 3.1.0 to match the casacore version
+and hopefully avoid confusion.
+
+Changes:
+
+ - handle unicode even better! :) (#158)
+ - iteritems() in casacore/tables/table.py incompatible with Python 3 (#165)
+ - Make a big binary wheel including dependencies (#145)
+ - Use ~ instead of - to negate the mask (#179)
+ 
+ 
+# 3.0
+
+ - Improve the setup procedure (#146)
+ - prepare for 3.0.0 (#147)
+ - More find_boost improvements  build system (#131)
+ - gcc failure when attempting setup.py build_ext on Red Hat EL 7.4 (quantamath.cc) (#135)
+ - python-casacore uses hardcoded casa:: calls (#136)
+ - quanta example not working with python 2.7.6 bug (#17)
+ - Fix build and namespace problem (#137)
+ - Remove deprecated has_key (#132)
+ - Correct header guard macro definition (#156)
+ - Avoiding TypeError deep down in setuptool (#155)
+
+
+# 2.2.0
+
+ - Expose MeasurementSet functionality (#61)
+ - Many improvements to documentation and test coverage
+   Thanks to Shibasis Patel (@shibasisp) our Google summer of Code '17 student.
+ 
+ A full list of changes can be found on the issue tracker:
+ 
+ https://github.com/casacore/python-casacore/milestone/6?closed=1
+ 
+
+# 2.1.0
+
+
+ - Replaced references to pyrap -> casacore (issue #16)
+ - Experimental support for Python3 (needs python3 branch build of casacore)
+ - Link against correct Python on OSX when using homebrew (issue #15)
+
+
+# 2.0.0
+
+- Renamed project from pyrap to python-casacore
+- Renamed modules from pyrap to casacore
+- Added backswards compatible module which imports casacore
+- Removed scons build dependency, just use setup.py 
+- Depends on CASACORE 2.0
+- Cleanup of project structure
+- Moved development to github

python_casacore-3.6.1/CMakeLists.txt

@@ -0,0 +1,41 @@
+cmake_minimum_required(VERSION 3.15...3.26)
+project(python-casacore)
+
+find_package(
+  Python
+  COMPONENTS Interpreter Development.Module
+  REQUIRED)
+
+# Find Casacore and its dependencies
+set(CMAKE_MODULE_PATH ${CMAKE_SOURCE_DIR}/cmake)
+find_package(Casacore REQUIRED)
+find_package(Boost REQUIRED COMPONENTS python)
+
+# If environment variable CASACORE_DATA is set, assume it points to a directory
+# containing the cascacore data files, and install its contents.
+if(DEFINED ENV{CASACORE_DATA})
+  foreach(_dir ephemerides geodetic)
+    if(NOT IS_DIRECTORY $ENV{CASACORE_DATA}/${_dir})
+      message(
+        SEND_ERROR
+          "Directory $ENV{CASACORE_DATA}/${_dir} does not exist. "
+          "Does environment variable CASACORE_DATA point to a valid data directory?"
+      )
+    endif()
+  endforeach()
+  install(
+    DIRECTORY $ENV{CASACORE_DATA}
+    DESTINATION casacore
+    COMPONENT data)
+else()
+  message(
+    WARNING
+      "Environment variable CASACORE_DATA is not defined. "
+      "Casacore data files will not be included in the python-casacore package."
+  )
+endif()
+
+add_subdirectory(src)
+if(BUILD_TESTING)
+  add_subdirectory(tests)
+endif()

python_casacore-3.6.1/PKG-INFO

@@ -0,0 +1,274 @@
+Metadata-Version: 2.1
+Name: python-casacore
+Version: 3.6.1
+Summary: A wrapper around CASACORE, the radio astronomy library
+Keywords: pyrap,casacore,utilities,astronomy
+Author-Email: Malte Marquarding <Malte.Marquarding@gmail.com>, Ger van Diepen <gervandiepen@gmail.com>, Gijs Molenaar <gijs@pythonic.nl>, Tammo Jan Dijkema <dijkema@astron.nl>, Marcel Loose <loose@astron.nl>
+License:                    GNU LESSER GENERAL PUBLIC LICENSE
+                               Version 3, 29 June 2007
+        
+         Copyright (C) 2007 Free Software Foundation, Inc. <https://fsf.org/>
+         Everyone is permitted to copy and distribute verbatim copies
+         of this license document, but changing it is not allowed.
+        
+        
+          This version of the GNU Lesser General Public License incorporates
+        the terms and conditions of version 3 of the GNU General Public
+        License, supplemented by the additional permissions listed below.
+        
+          0. Additional Definitions.
+        
+          As used herein, "this License" refers to version 3 of the GNU Lesser
+        General Public License, and the "GNU GPL" refers to version 3 of the GNU
+        General Public License.
+        
+          "The Library" refers to a covered work governed by this License,
+        other than an Application or a Combined Work as defined below.
+        
+          An "Application" is any work that makes use of an interface provided
+        by the Library, but which is not otherwise based on the Library.
+        Defining a subclass of a class defined by the Library is deemed a mode
+        of using an interface provided by the Library.
+        
+          A "Combined Work" is a work produced by combining or linking an
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+        Corresponding Source for the Combined Work, excluding any source code
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+          The "Corresponding Application Code" for a Combined Work means the
+        object code and/or source code for the Application, including any data
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+          1. Exception to Section 3 of the GNU GPL.
+        
+          You may convey a covered work under sections 3 and 4 of this License
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+        
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+        
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+        facility refers to a function or data to be supplied by an Application
+        that uses the facility (other than as an argument passed when the
+        facility is invoked), then you may convey a copy of the modified
+        version:
+        
+           a) under this License, provided that you make a good faith effort to
+           ensure that, in the event an Application does not supply the
+           function or data, the facility still operates, and performs
+           whatever part of its purpose remains meaningful, or
+        
+           b) under the GNU GPL, with none of the additional permissions of
+           this License applicable to that copy.
+        
+          3. Object Code Incorporating Material from Library Header Files.
+        
+          The object code form of an Application may incorporate material from
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+        
+           d) Do one of the following:
+        
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+               the Linked Version to produce a modified Combined Work, in the
+               manner specified by section 6 of the GNU GPL for conveying
+               Corresponding Source.
+        
+               1) Use a suitable shared library mechanism for linking with the
+               Library.  A suitable mechanism is one that (a) uses at run time
+               a copy of the Library already present on the user's computer
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+               of the Library that is interface-compatible with the Linked
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+        
+           e) Provide Installation Information, but only if you would otherwise
+           be required to provide such information under section 6 of the
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+           you use option 4d0, the Installation Information must accompany
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+          5. Combined Libraries.
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+          You may place library facilities that are a work based on the
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+        facilities that are not Applications and are not covered by this
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+        choice, if you do both of the following:
+        
+           a) Accompany the combined library with a copy of the same work based
+           on the Library, uncombined with any other library facilities,
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+           b) Give prominent notice with the combined library that part of it
+           is a work based on the Library, and explaining where to find the
+           accompanying uncombined form of the same work.
+        
+          6. Revised Versions of the GNU Lesser General Public License.
+        
+          The Free Software Foundation may publish revised and/or new versions
+        of the GNU Lesser General Public License from time to time. Such new
+        versions will be similar in spirit to the present version, but may
+        differ in detail to address new problems or concerns.
+        
+          Each version is given a distinguishing version number. If the
+        Library as you received it specifies that a certain numbered version
+        of the GNU Lesser General Public License "or any later version"
+        applies to it, you have the option of following the terms and
+        conditions either of that published version or of any later version
+        published by the Free Software Foundation. If the Library as you
+        received it does not specify a version number of the GNU Lesser
+        General Public License, you may choose any version of the GNU Lesser
+        General Public License ever published by the Free Software Foundation.
+        
+          If the Library as you received it specifies that a proxy can decide
+        whether future versions of the GNU Lesser General Public License shall
+        apply, that proxy's public statement of acceptance of any version is
+        permanent authorization for you to choose that version for the
+        Library.
+Classifier: Development Status :: 5 - Production/Stable
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: GNU Lesser General Public License v3 (LGPLv3)
+Classifier: Natural Language :: English
+Classifier: Operating System :: POSIX :: Linux
+Classifier: Programming Language :: C++
+Classifier: Programming Language :: Python :: 3
+Classifier: Topic :: Scientific/Engineering :: Astronomy
+Project-URL: Homepage, https://github.com/casacore/python-casacore
+Requires-Python: >=3.7
+Requires-Dist: numpy
+Requires-Dist: six
+Description-Content-Type: text/x-rst
+
+python-casacore
+===============
+
+Python-casacore is a set of Python bindings for `casacore <https://code.google.com/p/casacore/>`_,
+a c++ library used in radio astronomy. Python-casacore replaces the old
+`pyrap <https://code.google.com/p/pyrap/>`_.
+
+
+The python-casacore documentation can be found on `casacore.github.io/python-casacore <http://casacore.github.io/python-casacore>`_.
+
+Build status
+------------
+
+.. image:: https://github.com/casacore/python-casacore/actions/workflows/linux.yml/badge.svg
+    :target: https://github.com/casacore/python-casacore/actions/workflows/linux.yml
+.. image:: https://github.com/casacore/python-casacore/actions/workflows/osx.yml/badge.svg
+    :target: https://github.com/casacore/python-casacore/actions/workflows/osx.yml
+
+
+Installation
+============
+
+Binary wheels
+-------------
+
+We distribute binary manylinux2014 for Linux, which requires pip >= 19.3. To
+install python-casacore from a binary wheel run::
+
+    $ pip install python-casacore
+
+
+Debian & Ubuntu
+---------------
+
+python-casacore is now part of Debian and Ubuntu and can be installed using apt::
+
+    $ sudo apt-get install python3-casacore
+
+
+from source
+-----------
+
+install these requirements:
+
+* `Casacore <https://github.com/casacore/casacore/>`__
+* `Boost-python <http://www.boost.org/libs/python/doc/>`_
+* `numpy <http://www.numpy.org/>`_
+* `cfitsio <http://heasarc.gsfc.nasa.gov/fitsio/>`_
+* `wcslib <https://www.atnf.csiro.au/people/mcalabre/WCS/>`_
+* `pip <https://bootstrap.pypa.io/get-pip.py>`_
+
+On ubuntu you can install these with::
+
+    $ apt-get install casacore-dev libboost-python-dev python3-numpy \
+        libcfitsio3-dev wcslib-dev python3-pip
+
+* compile and install::
+
+    $ pip install --no-binary python-casacore python-casacore
+
+* or if you are installing from the source repository::
+
+    $ pip install .
+
+* If the compilation fails you might need to help the compiler find the paths to the
+  boost and casacore libraries and headers. You can control this with the `CFLAGS` environment
+  variable. For example on OS X when using homebrew and clang you need to do something like
+  this::
+
+    CFLAGS="-std=c++11 \
+            -I/usr/local/Cellar/boost/1.68.0/include/ \
+            -I/usr/local/include/  \
+            -L/usr/local/Cellar/boost/1.68.0/lib \
+            -L/usr/local/lib/" \
+            pip install python-casacore
+
+Support
+=======
+
+if you have any problems, suggestions or questions please open an issue on the
+python-casacore github issue tracker.
+
+Credits
+=======
+
+* `Ger van Diepen <gervandiepen@gmail.com>`_
+* `Malte Marquarding <Malte.Marquarding@gmail.com>`_
+* `Gijs Molenaar <gijs@pythonic.nl>`_
+* `Tammo Jan Dijkema <dijkema@astron.nl>`_

{python-casacore-3.5.1 → python_casacore-3.6.1}/README.rst

@@ -8,10 +8,14 @@ a c++ library used in radio astronomy. Python-casacore replaces the old
 
 The python-casacore documentation can be found on `casacore.github.io/python-casacore <http://casacore.github.io/python-casacore>`_.
 
-.. image:: https://travis-ci.org/casacore/python-casacore.svg?branch=master
-    :target: https://travis-ci.org/casacore/python-casacore
-.. image:: https://coveralls.io/repos/github/casacore/python-casacore/badge.svg?branch=master
-    :target: https://coveralls.io/github/casacore/python-casacore?branch=master
+Build status
+------------
+
+.. image:: https://github.com/casacore/python-casacore/actions/workflows/linux.yml/badge.svg
+    :target: https://github.com/casacore/python-casacore/actions/workflows/linux.yml
+.. image:: https://github.com/casacore/python-casacore/actions/workflows/osx.yml/badge.svg
+    :target: https://github.com/casacore/python-casacore/actions/workflows/osx.yml
+
 
 Installation
 ============
@@ -30,7 +34,7 @@ Debian & Ubuntu
 
 python-casacore is now part of Debian and Ubuntu and can be installed using apt::
 
-    $ sudo apt-get install python-casacore
+    $ sudo apt-get install python3-casacore
 
 
 from source
@@ -38,16 +42,17 @@ from source
 
 install these requirements:
 
-* `setuptools <https://pypi.python.org/pypi/setuptools>`_
 * `Casacore <https://github.com/casacore/casacore/>`__
 * `Boost-python <http://www.boost.org/libs/python/doc/>`_
-* `numpy <http://www.numpy.org/>`_ 
+* `numpy <http://www.numpy.org/>`_
 * `cfitsio <http://heasarc.gsfc.nasa.gov/fitsio/>`_
+* `wcslib <https://www.atnf.csiro.au/people/mcalabre/WCS/>`_
+* `pip <https://bootstrap.pypa.io/get-pip.py>`_
 
 On ubuntu you can install these with::
 
-    $ apt-get install casacore-dev python-numpy \
-        python-setuptools libboost-python-dev libcfitsio3-dev wcslib-dev
+    $ apt-get install casacore-dev libboost-python-dev python3-numpy \
+        libcfitsio3-dev wcslib-dev python3-pip
 
 * compile and install::
 
@@ -55,13 +60,13 @@ On ubuntu you can install these with::
 
 * or if you are installing from the source repository::
 
-    $ python ./setup.py install
-    
+    $ pip install .
+
 * If the compilation fails you might need to help the compiler find the paths to the
   boost and casacore libraries and headers. You can control this with the `CFLAGS` environment
   variable. For example on OS X when using homebrew and clang you need to do something like
   this::
-  
+
     CFLAGS="-std=c++11 \
             -I/usr/local/Cellar/boost/1.68.0/include/ \
             -I/usr/local/include/  \

python_casacore-3.6.1/casacore/.aipsrc

@@ -0,0 +1 @@
+measures.directory: ${CASACORE_DATADIR}

python_casacore-3.6.1/casacore/__init__.py

@@ -0,0 +1,13 @@
+import os
+from ._version import __version__
+
+__mincasacoreversion__ = "3.1.1"
+
+# If environment variable `AIPSPATH` is not set, then set it to the directory
+# containing the `.aipsrc` file that is distributed with this package.
+# This `.aipsrc` file uses the environment `CASACORE_DATADIR`, which should
+# point to the directory containing the casacore data files.
+if "AIPSPATH" not in os.environ:
+    root = os.path.dirname(__file__)
+    os.environ["AIPSPATH"] = root
+    os.environ["CASACORE_DATADIR"] = os.path.join(root, "data")

python_casacore-3.6.1/casacore/_version.py

@@ -0,0 +1,16 @@
+# file generated by setuptools_scm
+# don't change, don't track in version control
+TYPE_CHECKING = False
+if TYPE_CHECKING:
+    from typing import Tuple, Union
+    VERSION_TUPLE = Tuple[Union[int, str], ...]
+else:
+    VERSION_TUPLE = object
+
+version: str
+__version__: str
+__version_tuple__: VERSION_TUPLE
+version_tuple: VERSION_TUPLE
+
+__version__ = version = '3.6.1'
+__version_tuple__ = version_tuple = (3, 6, 1)

{python-casacore-3.5.1 → python_casacore-3.6.1}/casacore/fitting/fitting.py

@@ -1,3 +1,5 @@
+from __future__ import print_function
+
 from ._fitting import fitting
 import numpy as NUM
 import six
@@ -231,7 +233,7 @@ class fitserver(object):
                 functional("hyper", len(x)).todict()
         self._fitids[fid]["constraint"][i]["x"] = [float(v) for v in x]
         self._fitids[fid]["constraint"][i]["y"] = float(y)
-        six.print_(self._fitids[fid]["constraint"])
+        print(self._fitids[fid]["constraint"])
 
     def fitpoly(self, n, x, y, sd=None, wt=1.0, fid=0):
         if self.set(n=n + 1, fid=fid):

{python-casacore-3.5.1 → python_casacore-3.6.1}/casacore/images/coordinates.py

@@ -25,7 +25,7 @@
 #
 # $Id$
 
-import six
+from __future__ import print_function
 
 
 class coordinatesystem(object):
@@ -66,7 +66,7 @@ class coordinatesystem(object):
         return self._csys
 
     def summary(self):
-        six.print_(str(self))
+        print(str(self))
 
     def _get_coordinatenames(self):
         """Create ordered list of coordinate names

{python-casacore-3.5.1 → python_casacore-3.6.1}/casacore/images/image.py

@@ -23,13 +23,13 @@
 #                        520 Edgemont Road
 #                        Charlottesville, VA 22903-2475 USA
 
+from __future__ import print_function
 
 from six import string_types, integer_types
 from ._images import Image
 import numpy
 import numpy.ma as nma
 from casacore.images.coordinates import coordinatesystem
-import six
 
 
 class image(Image):
@@ -154,7 +154,7 @@ class image(Image):
                                                       [(image, '', imgs)],
                                                       locals=cu.getlocals(3))
                         except:
-                            six.print_("Probably could not import casacore.util")
+                            print("Probably could not import casacore.util")
                             pass
                         Image.__init__(self, imagename, maskname, imgs)
                     else:
@@ -592,21 +592,21 @@ class image(Image):
         # Test if casaviewer can be found.
         # On OS-X 'which' always returns 0, so use test on top of it.
         if os.system('test -x `which casaviewer` > /dev/null 2>&1') == 0:
-            six.print_("Starting casaviewer in the background ...")
+            print("Starting casaviewer in the background ...")
             self.unlock()
             if self.ispersistent():
                 os.system('casaviewer ' + self.name() + ' &')
             elif len(tempname) > 0:
-                six.print_("  making a persistent copy in " + tempname)
-                six.print_("  which should be deleted after the viewer has ended")
+                print("  making a persistent copy in " + tempname)
+                print("  which should be deleted after the viewer has ended")
                 self.saveas(tempname)
                 os.system('casaviewer ' + tempname + ' &')
             else:
-                six.print_("Cannot view because the image is in memory only.")
-                six.print_("You can browse a persistent copy of the image like:")
-                six.print_("   t.view('/tmp/tempimage')")
+                print("Cannot view because the image is in memory only.")
+                print("You can browse a persistent copy of the image like:")
+                print("   t.view('/tmp/tempimage')")
         else:
-            six.print_("casaviewer cannot be found")
+            print("casaviewer cannot be found")
 
     def _adaptAxes(self, axes):
         # If axes is a single integer value, turn it into a list.

{python-casacore-3.5.1 → python_casacore-3.6.1}/casacore/measures/__init__.py

@@ -31,6 +31,8 @@ from ._measures import measures as _measures
 import casacore.quanta as dq
 import os
 
+from six import string_types
+
 if 'MEASURESDATA' in os.environ.keys():
     if 'AIPSPATH' not in os.environ.keys():
         os.environ['AIPSPATH'] = '%s dummy dummy' % os.environ['MEASURESDATA']
@@ -624,7 +626,7 @@ class measures(_measures):
         if not is_measure(v):
             raise TypeError('Incorrect input type for getvalue()')
         import re
-        rx = re.compile("m\d+")
+        rx = re.compile(r"m\d+")
         out = []
         keys = list(v.keys())
         keys.sort()