pysrat 0.1.0__tar.gz

pysrat-0.1.0/.github/workflows/release.yml

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+name: Release
+
+on:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+  build-wheels:
+    name: Build wheels (${{ matrix.os }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, windows-latest, macos-latest]
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.21.2
+        env:
+          CIBW_BUILD: "cp39-* cp310-* cp311-* cp312-* cp313-*"
+          CIBW_SKIP: "pp* *musllinux*"
+          CIBW_ARCHS_LINUX: "x86_64"
+          CIBW_ARCHS_MACOS: "x86_64 arm64"
+          CIBW_ARCHS_WINDOWS: "AMD64"
+          CIBW_TEST_COMMAND: "python -c \"import pysrat; print('import ok')\""
+          CIBW_TEST_SKIP: "*"
+          CIBW_BUILD_FRONTEND: "build"
+          CIBW_BUILD_VERBOSITY: "1"
+
+      - name: Upload wheels
+        uses: actions/upload-artifact@v4
+        with:
+          name: wheels-${{ matrix.os }}
+          path: wheelhouse/*.whl
+
+  build-sdist:
+    name: Build sdist
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.11"
+
+      - name: Build sdist
+        run: python -m build --sdist
+
+      - name: Upload sdist
+        uses: actions/upload-artifact@v4
+        with:
+          name: sdist
+          path: dist/*.tar.gz
+
+  publish:
+    name: Publish to PyPI
+    runs-on: ubuntu-latest
+    needs: [build-wheels, build-sdist]
+    permissions:
+      contents: read
+      id-token: write
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          pattern: wheels-*
+          merge-multiple: true
+          path: dist
+
+      - uses: actions/download-artifact@v4
+        with:
+          name: sdist
+          path: dist
+
+      - name: Publish
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.PYPI_API_TOKEN }}

pysrat-0.1.0/.gitignore

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+# Python
+__pycache__/
+*.py[cod]
+*$py.class
+*.so
+*.dylib
+*.pyd
+
+# Virtual environments
+.venv/
+venv/
+ENV/
+
+# Build artifacts
+build/
+dist/
+*.egg-info/
+*.egg
+
+# CMake
+CMakeFiles/
+CMakeCache.txt
+cmake_install.cmake
+Makefile
+
+# Tests/coverage
+.pytest_cache/
+.coverage
+htmlcov/
+
+# IDE/editor
+.vscode/
+.idea/
+.DS_Store
+
+# Logs
+*.log

pysrat-0.1.0/CMakeLists.txt

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+cmake_minimum_required(VERSION 3.18)
+project(pysrat LANGUAGES C CXX)
+
+set(CMAKE_CXX_STANDARD 17)
+set(CMAKE_CXX_STANDARD_REQUIRED ON)
+
+find_package(Python COMPONENTS Interpreter Development REQUIRED)
+find_package(pybind11 CONFIG REQUIRED)
+
+# C core (bundled for convenience)
+add_library(srat_core STATIC
+  csrc/utils/numlib.c
+  csrc/utils/inv_log_psi.c
+  csrc/utils/gauss_inte.c
+  csrc/utils/logistic.c
+  csrc/utils/norm.c
+)
+target_include_directories(srat_core PUBLIC ${CMAKE_CURRENT_SOURCE_DIR}/csrc/utils)
+
+# Python extension module
+pybind11_add_module(_core
+  csrc/basic/basic_pybind.cpp
+  csrc/basic/em_exp.cpp
+  csrc/basic/em_tnorm.cpp
+  csrc/basic/em_pareto.cpp
+  csrc/basic/em_lnorm.cpp
+  csrc/basic/em_tlogis.cpp
+  csrc/basic/em_llogis.cpp
+  csrc/basic/em_gamma.cpp
+  csrc/basic/em_txvmax.cpp
+  csrc/basic/gumbel.cpp
+  csrc/basic/txvmin.cpp
+  csrc/basic/lxvmax.cpp
+  csrc/basic/lxvmin.cpp
+)
+target_link_libraries(_core PRIVATE srat_core Python::Python)
+target_include_directories(_core PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/csrc/utils)
+
+# CF1 span backend module (C++20)
+pybind11_add_module(marlib_cf1
+  csrc/cf1/cf1_pybind.cpp
+  csrc/cf1/poisson.cpp
+)
+target_compile_features(marlib_cf1 PRIVATE cxx_std_20)
+target_include_directories(marlib_cf1 PRIVATE ${CMAKE_CURRENT_SOURCE_DIR}/csrc/cf1)
+
+install(TARGETS _core
+  LIBRARY DESTINATION pysrat
+  ARCHIVE DESTINATION pysrat
+  RUNTIME DESTINATION pysrat
+)
+
+install(TARGETS marlib_cf1
+  LIBRARY DESTINATION pysrat
+  ARCHIVE DESTINATION pysrat
+  RUNTIME DESTINATION pysrat
+)

pysrat-0.1.0/LICENSE

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+MIT License
+
+Copyright (c) 2026 Hiroyuki Okamura
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

pysrat-0.1.0/PKG-INFO

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+Metadata-Version: 2.2
+Name: pysrat
+Version: 0.1.0
+Summary: Python package for software reliability analysis and modeling
+Author-Email: Hiroyuki Okamura <okamu@hiroshima-u.ac.jp>
+License: MIT License
+         
+         Copyright (c) 2026 Hiroyuki Okamura
+         
+         Permission is hereby granted, free of charge, to any person obtaining a copy
+         of this software and associated documentation files (the "Software"), to deal
+         in the Software without restriction, including without limitation the rights
+         to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+         copies of the Software, and to permit persons to whom the Software is
+         furnished to do so, subject to the following conditions:
+         
+         The above copyright notice and this permission notice shall be included in all
+         copies or substantial portions of the Software.
+         
+         THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+         IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+         FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+         AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+         LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+         OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+         SOFTWARE.
+         
+Requires-Python: >=3.9
+Requires-Dist: numpy>=1.23
+Requires-Dist: scipy>=1.9
+Requires-Dist: matplotlib>=3.7
+Requires-Dist: tqdm>=4.66
+Provides-Extra: dev
+Requires-Dist: pytest>=7; extra == "dev"
+Requires-Dist: pandas>=2.0; extra == "dev"
+Requires-Dist: tqdm>=4.66; extra == "dev"
+Requires-Dist: build; extra == "dev"
+Requires-Dist: twine; extra == "dev"
+Description-Content-Type: text/markdown
+
+# pysrat
+
+Python implementation of NHPP (non-homogeneous Poisson process) software reliability models with a C/pybind11 core and a Pythonic estimator API.
+
+## Features
+
+- Scikit-learn–style estimators: `model.fit(data)` and `params_`/`llf_`/`aic_`
+- NHPP data helpers: `NHPPData.from_intervals(...)`, `from_counts(...)`, `from_fault_times(...)`
+- Fast EM updates in C via pybind11
+- CF1 (canonical phase-type) NHPP model and distribution helpers
+- Simple plotting helpers (`plot_mvf`, `plot_dmvf`, `plot_rate`)
+
+## Installation
+
+```bash
+python -m pip install -U pip
+pip install -e .
+```
+
+Notes:
+- A C++20-capable compiler is required to build the CF1 extension module.
+
+## Quick start
+
+```python
+import numpy as np
+from pysrat import NHPPData, ExponentialNHPP, plot_mvf
+
+data = NHPPData.from_intervals(time=[1, 1, 1, 1], fault=[0, 1, 0, 5])
+
+model = ExponentialNHPP().fit(data)
+print(model.params_)
+print(model.aic_)
+
+plot_mvf(data, model)
+```
+
+CF1 example:
+
+```python
+import numpy as np
+from pysrat import NHPPData
+from pysrat.models.cf1 import CanonicalPhaseTypeNHPP
+
+data = NHPPData.from_intervals(time=[1, 2, 1.5], fault=[1, 0, 2], type=[0, 1, 0])
+model = CanonicalPhaseTypeNHPP(3).fit(data)
+print(model.params_)
+```
+
+## API overview
+
+### Data
+
+- `NHPPData.from_intervals(time=..., fault=..., type=..., te=...)`
+- `NHPPData.from_counts(fault=...)`
+- `NHPPData.from_fault_times(times=..., te=...)`
+
+### Models
+
+- `ExponentialNHPP` (exponential)
+- `TruncatedNormalNHPP`, `Pareto2NHPP`, `GammaNHPP`, `LogNormalNHPP`
+- `TruncatedLogisticNHPP`, `LogLogisticNHPP`
+- `TruncatedExtremeValueMaxNHPP`, `LogExtremeValueMaxNHPP`
+- `TruncatedExtremeValueMinNHPP`, `LogExtremeValueMinNHPP`
+- `CanonicalPhaseTypeNHPP` (CF1)
+
+### Model comparison
+
+```python
+from pysrat import compare, ExponentialNHPP, NHPPData
+
+data = NHPPData.from_counts([0, 1, 0, 5])
+fitted, best = compare([ExponentialNHPP()], data, criterion="AIC")
+```
+
+### Distributions
+
+R-like helpers live under `pysrat.dists`, e.g.:
+
+```python
+from pysrat.dists import dcf1, pcf1, rcf1
+
+alpha = [0.4, 0.3, 0.3]
+rate = [0.5, 1.0, 1.5]
+print(dcf1([0.1, 0.5], alpha=alpha, rate=rate))
+print(pcf1([0.1, 0.5], alpha=alpha, rate=rate))
+print(rcf1(5, alpha=alpha, rate=rate))
+```
+
+### Plotting
+
+- `plot_mvf(data, model_or_results)`
+- `plot_dmvf(data, model_or_results)`
+- `plot_rate(data, model_or_results)`
+
+Note: Only the `plot_*` functions above are exported; legacy aliases like `mvfplot`, `dmvfplot`, and `rateplot` are not provided.
+
+`model_or_results` can be an `NHPPModel`, a `dict[str, NHPPModel]`, or a list of models.
+
+### Hyperparameters
+
+Models expose sklearn-style hyperparameters via `get_params()`/`set_params()`. For example:
+
+```python
+model = ExponentialNHPP(omega0=1.0, rate0=1.0)
+model.set_params(rate0=0.5)
+```
+
+## Development
+
+```bash
+python -m pip install -U pip
+pip install -e .[dev]
+pytest -q
+```
+
+## Release
+
+Tag and push to trigger the PyPI release workflow:
+
+```bash
+git tag v0.1.0
+git push --tags
+```
+
+Set either:
+- `PYPI_API_TOKEN` secret for token-based upload, or
+- Trusted Publishing (OIDC) in PyPI and keep the workflow permissions as-is.

pysrat-0.1.0/README.md

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+# pysrat
+
+Python implementation of NHPP (non-homogeneous Poisson process) software reliability models with a C/pybind11 core and a Pythonic estimator API.
+
+## Features
+
+- Scikit-learn–style estimators: `model.fit(data)` and `params_`/`llf_`/`aic_`
+- NHPP data helpers: `NHPPData.from_intervals(...)`, `from_counts(...)`, `from_fault_times(...)`
+- Fast EM updates in C via pybind11
+- CF1 (canonical phase-type) NHPP model and distribution helpers
+- Simple plotting helpers (`plot_mvf`, `plot_dmvf`, `plot_rate`)
+
+## Installation
+
+```bash
+python -m pip install -U pip
+pip install -e .
+```
+
+Notes:
+- A C++20-capable compiler is required to build the CF1 extension module.
+
+## Quick start
+
+```python
+import numpy as np
+from pysrat import NHPPData, ExponentialNHPP, plot_mvf
+
+data = NHPPData.from_intervals(time=[1, 1, 1, 1], fault=[0, 1, 0, 5])
+
+model = ExponentialNHPP().fit(data)
+print(model.params_)
+print(model.aic_)
+
+plot_mvf(data, model)
+```
+
+CF1 example:
+
+```python
+import numpy as np
+from pysrat import NHPPData
+from pysrat.models.cf1 import CanonicalPhaseTypeNHPP
+
+data = NHPPData.from_intervals(time=[1, 2, 1.5], fault=[1, 0, 2], type=[0, 1, 0])
+model = CanonicalPhaseTypeNHPP(3).fit(data)
+print(model.params_)
+```
+
+## API overview
+
+### Data
+
+- `NHPPData.from_intervals(time=..., fault=..., type=..., te=...)`
+- `NHPPData.from_counts(fault=...)`
+- `NHPPData.from_fault_times(times=..., te=...)`
+
+### Models
+
+- `ExponentialNHPP` (exponential)
+- `TruncatedNormalNHPP`, `Pareto2NHPP`, `GammaNHPP`, `LogNormalNHPP`
+- `TruncatedLogisticNHPP`, `LogLogisticNHPP`
+- `TruncatedExtremeValueMaxNHPP`, `LogExtremeValueMaxNHPP`
+- `TruncatedExtremeValueMinNHPP`, `LogExtremeValueMinNHPP`
+- `CanonicalPhaseTypeNHPP` (CF1)
+
+### Model comparison
+
+```python
+from pysrat import compare, ExponentialNHPP, NHPPData
+
+data = NHPPData.from_counts([0, 1, 0, 5])
+fitted, best = compare([ExponentialNHPP()], data, criterion="AIC")
+```
+
+### Distributions
+
+R-like helpers live under `pysrat.dists`, e.g.:
+
+```python
+from pysrat.dists import dcf1, pcf1, rcf1
+
+alpha = [0.4, 0.3, 0.3]
+rate = [0.5, 1.0, 1.5]
+print(dcf1([0.1, 0.5], alpha=alpha, rate=rate))
+print(pcf1([0.1, 0.5], alpha=alpha, rate=rate))
+print(rcf1(5, alpha=alpha, rate=rate))
+```
+
+### Plotting
+
+- `plot_mvf(data, model_or_results)`
+- `plot_dmvf(data, model_or_results)`
+- `plot_rate(data, model_or_results)`
+
+Note: Only the `plot_*` functions above are exported; legacy aliases like `mvfplot`, `dmvfplot`, and `rateplot` are not provided.
+
+`model_or_results` can be an `NHPPModel`, a `dict[str, NHPPModel]`, or a list of models.
+
+### Hyperparameters
+
+Models expose sklearn-style hyperparameters via `get_params()`/`set_params()`. For example:
+
+```python
+model = ExponentialNHPP(omega0=1.0, rate0=1.0)
+model.set_params(rate0=0.5)
+```
+
+## Development
+
+```bash
+python -m pip install -U pip
+pip install -e .[dev]
+pytest -q
+```
+
+## Release
+
+Tag and push to trigger the PyPI release workflow:
+
+```bash
+git tag v0.1.0
+git push --tags
+```
+
+Set either:
+- `PYPI_API_TOKEN` secret for token-based upload, or
+- Trusted Publishing (OIDC) in PyPI and keep the workflow permissions as-is.