pysofra 0.1.0a1__tar.gz → 0.1.0a2__tar.gz

{pysofra-0.1.0a1 → pysofra-0.1.0a2}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pysofra
-Version: 0.1.0a1
+Version: 0.1.0a2
 Summary: Statistical reporting and table preparation framework for Python — the missing reporting layer.
 Project-URL: Homepage, https://github.com/jturner-uofl/pysofra
 Project-URL: Documentation, https://github.com/jturner-uofl/pysofra
@@ -72,7 +72,7 @@ Description-Content-Type: text/markdown
 
 [![Coverage](https://img.shields.io/badge/coverage-100%25-brightgreen.svg)](https://github.com/jturner-uofl/pysofra)
 [![Python](https://img.shields.io/badge/python-3.11%20%7C%203.12%20%7C%203.13-blue.svg)](https://www.python.org/downloads/)
-[![License: GPL-3.0+](https://img.shields.io/badge/license-GPL--3.0--or--later-blue.svg)](LICENSE)
+[![License: GPL-3.0+](https://img.shields.io/badge/license-GPL--3.0--or--later-blue.svg)](https://github.com/jturner-uofl/pysofra/blob/main/LICENSE)
 [![Style: ruff](https://img.shields.io/badge/style-ruff-purple.svg)](https://github.com/astral-sh/ruff)
 [![Types: mypy strict](https://img.shields.io/badge/types-mypy%20strict-blue.svg)](http://mypy-lang.org/)
 [![Tests: 886](https://img.shields.io/badge/tests-886%20passing-brightgreen.svg)](#status)
@@ -116,9 +116,9 @@ Description-Content-Type: text/markdown
 
 <div align="center">
 
-**[Showcase notebook](examples/pysofra_showcase.ipynb)** · [rendered HTML](examples/pysofra_showcase.html) — *47 cells, every section a side-by-side numeric proof. Start here if you have 60 seconds.*
+**[Showcase notebook](https://github.com/jturner-uofl/pysofra/blob/main/examples/pysofra_showcase.ipynb)** — *47 cells, every section a side-by-side numeric proof. Start here if you have 60 seconds.*
 
-**[End-to-end tutorial](examples/pysofra_tutorial.ipynb)** · [rendered HTML](examples/pysofra_tutorial.html) — *126 cells walking every public feature on a synthetic two-arm trial.*
+**[End-to-end tutorial](https://github.com/jturner-uofl/pysofra/blob/main/examples/pysofra_tutorial.ipynb)** — *126 cells walking every public feature on a synthetic two-arm trial.*
 
 </div>
 
@@ -171,10 +171,10 @@ fit = sm.Logit(df["event"], X).fit(disp=False)
 )
 ```
 
-The full worked example from the JSS paper — baseline table by
-treatment arm, regression table with forest plot, and Kaplan-Meier
-survival summary — is in
-[`paper/replication/example_trial.py`](paper/replication/example_trial.py).
+The end-to-end worked example — baseline table by treatment arm,
+regression table with forest plot, and Kaplan-Meier survival summary —
+is in the
+[showcase notebook](https://github.com/jturner-uofl/pysofra/blob/main/examples/pysofra_showcase.ipynb).
 
 ---
 
@@ -255,47 +255,40 @@ pip install "pysofra[dev]"        # testing + linting (pytest, ruff, mypy, hypot
 
 ## Status
 
-PySofra is in **alpha** (`0.1.0a1`). The public API surface is pinned
+PySofra is in **alpha** (`0.1.0a2`). The public API surface is pinned
 by an explicit
-[API-stability test](tests/test_joss_api_stability.py) so that any
-unintended rename, removal, or signature change surfaces as a failed
-test. Quality bar at this release:
+[API-stability test](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_api_stability.py)
+so that any unintended rename, removal, or signature change surfaces as
+a failed test. Quality bar at this release:
 
 * **More than 800 tests passing**, **100% line coverage**, mypy strict, ruff clean.
 * Every numeric output is validated against `scipy`, `lifelines`,
   `statsmodels`, or a hand-computed textbook formula
-  ([test_joss_statistical_correctness.py](tests/test_joss_statistical_correctness.py)).
+  ([test_joss_statistical_correctness.py](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_statistical_correctness.py)).
 * Universal invariants enforced via Hypothesis on 720 randomized
   examples per CI run
-  ([test_joss_property_invariants.py](tests/test_joss_property_invariants.py)).
+  ([test_joss_property_invariants.py](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_property_invariants.py)).
 * Renderer output is byte-deterministic — identical input always
   produces identical HTML/Markdown/LaTeX, required for reproducible
   publication artifacts
-  ([test_joss_renderer_consistency.py](tests/test_joss_renderer_consistency.py)).
+  ([test_joss_renderer_consistency.py](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_renderer_consistency.py)).
 
 Bug reports and use-case feedback are very welcome.
 
-A **Journal of Statistical Software** paper ([`paper/paper.tex`](paper/paper.tex),
-bibliography in [`paper/paper.bib`](paper/paper.bib)) is in
-preparation. The [`paper/replication/`](paper/replication/) directory
-regenerates every numeric output and figure shown in the paper and
-includes an R cross-check script (`example_trial.R`) using
-`gtsummary` for digit-level verification. The
-[`paper/figures/`](paper/figures/) directory holds the rendered PDF
-and PNG embedded in the manuscript via `\includegraphics{}`.
-
 ## Contributing
 
 Bug reports, feature requests, and pull requests are all very welcome.
-Please read [`CONTRIBUTING.md`](CONTRIBUTING.md) for the workflow, the
-quality gates, and the
-[Code of Conduct](CODE_OF_CONDUCT.md).
+Please read
+[`CONTRIBUTING.md`](https://github.com/jturner-uofl/pysofra/blob/main/CONTRIBUTING.md)
+for the workflow, the quality gates, and the
+[Code of Conduct](https://github.com/jturner-uofl/pysofra/blob/main/CODE_OF_CONDUCT.md).
 
 ## License
 
-GPL-3.0-or-later. See [`LICENSE`](LICENSE).
+GPL-3.0-or-later. See
+[`LICENSE`](https://github.com/jturner-uofl/pysofra/blob/main/LICENSE).
 
 ## Citation
 
 If you use PySofra in academic work, please cite the project — see
-[`CITATION.cff`](CITATION.cff).
+[`CITATION.cff`](https://github.com/jturner-uofl/pysofra/blob/main/CITATION.cff).

{pysofra-0.1.0a1 → pysofra-0.1.0a2}/README.md

@@ -6,7 +6,7 @@
 
 [![Coverage](https://img.shields.io/badge/coverage-100%25-brightgreen.svg)](https://github.com/jturner-uofl/pysofra)
 [![Python](https://img.shields.io/badge/python-3.11%20%7C%203.12%20%7C%203.13-blue.svg)](https://www.python.org/downloads/)
-[![License: GPL-3.0+](https://img.shields.io/badge/license-GPL--3.0--or--later-blue.svg)](LICENSE)
+[![License: GPL-3.0+](https://img.shields.io/badge/license-GPL--3.0--or--later-blue.svg)](https://github.com/jturner-uofl/pysofra/blob/main/LICENSE)
 [![Style: ruff](https://img.shields.io/badge/style-ruff-purple.svg)](https://github.com/astral-sh/ruff)
 [![Types: mypy strict](https://img.shields.io/badge/types-mypy%20strict-blue.svg)](http://mypy-lang.org/)
 [![Tests: 886](https://img.shields.io/badge/tests-886%20passing-brightgreen.svg)](#status)
@@ -50,9 +50,9 @@
 
 <div align="center">
 
-**[Showcase notebook](examples/pysofra_showcase.ipynb)** · [rendered HTML](examples/pysofra_showcase.html) — *47 cells, every section a side-by-side numeric proof. Start here if you have 60 seconds.*
+**[Showcase notebook](https://github.com/jturner-uofl/pysofra/blob/main/examples/pysofra_showcase.ipynb)** — *47 cells, every section a side-by-side numeric proof. Start here if you have 60 seconds.*
 
-**[End-to-end tutorial](examples/pysofra_tutorial.ipynb)** · [rendered HTML](examples/pysofra_tutorial.html) — *126 cells walking every public feature on a synthetic two-arm trial.*
+**[End-to-end tutorial](https://github.com/jturner-uofl/pysofra/blob/main/examples/pysofra_tutorial.ipynb)** — *126 cells walking every public feature on a synthetic two-arm trial.*
 
 </div>
 
@@ -105,10 +105,10 @@ fit = sm.Logit(df["event"], X).fit(disp=False)
 )
 ```
 
-The full worked example from the JSS paper — baseline table by
-treatment arm, regression table with forest plot, and Kaplan-Meier
-survival summary — is in
-[`paper/replication/example_trial.py`](paper/replication/example_trial.py).
+The end-to-end worked example — baseline table by treatment arm,
+regression table with forest plot, and Kaplan-Meier survival summary —
+is in the
+[showcase notebook](https://github.com/jturner-uofl/pysofra/blob/main/examples/pysofra_showcase.ipynb).
 
 ---
 
@@ -189,47 +189,40 @@ pip install "pysofra[dev]"        # testing + linting (pytest, ruff, mypy, hypot
 
 ## Status
 
-PySofra is in **alpha** (`0.1.0a1`). The public API surface is pinned
+PySofra is in **alpha** (`0.1.0a2`). The public API surface is pinned
 by an explicit
-[API-stability test](tests/test_joss_api_stability.py) so that any
-unintended rename, removal, or signature change surfaces as a failed
-test. Quality bar at this release:
+[API-stability test](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_api_stability.py)
+so that any unintended rename, removal, or signature change surfaces as
+a failed test. Quality bar at this release:
 
 * **More than 800 tests passing**, **100% line coverage**, mypy strict, ruff clean.
 * Every numeric output is validated against `scipy`, `lifelines`,
   `statsmodels`, or a hand-computed textbook formula
-  ([test_joss_statistical_correctness.py](tests/test_joss_statistical_correctness.py)).
+  ([test_joss_statistical_correctness.py](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_statistical_correctness.py)).
 * Universal invariants enforced via Hypothesis on 720 randomized
   examples per CI run
-  ([test_joss_property_invariants.py](tests/test_joss_property_invariants.py)).
+  ([test_joss_property_invariants.py](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_property_invariants.py)).
 * Renderer output is byte-deterministic — identical input always
   produces identical HTML/Markdown/LaTeX, required for reproducible
   publication artifacts
-  ([test_joss_renderer_consistency.py](tests/test_joss_renderer_consistency.py)).
+  ([test_joss_renderer_consistency.py](https://github.com/jturner-uofl/pysofra/blob/main/tests/test_joss_renderer_consistency.py)).
 
 Bug reports and use-case feedback are very welcome.
 
-A **Journal of Statistical Software** paper ([`paper/paper.tex`](paper/paper.tex),
-bibliography in [`paper/paper.bib`](paper/paper.bib)) is in
-preparation. The [`paper/replication/`](paper/replication/) directory
-regenerates every numeric output and figure shown in the paper and
-includes an R cross-check script (`example_trial.R`) using
-`gtsummary` for digit-level verification. The
-[`paper/figures/`](paper/figures/) directory holds the rendered PDF
-and PNG embedded in the manuscript via `\includegraphics{}`.
-
 ## Contributing
 
 Bug reports, feature requests, and pull requests are all very welcome.
-Please read [`CONTRIBUTING.md`](CONTRIBUTING.md) for the workflow, the
-quality gates, and the
-[Code of Conduct](CODE_OF_CONDUCT.md).
+Please read
+[`CONTRIBUTING.md`](https://github.com/jturner-uofl/pysofra/blob/main/CONTRIBUTING.md)
+for the workflow, the quality gates, and the
+[Code of Conduct](https://github.com/jturner-uofl/pysofra/blob/main/CODE_OF_CONDUCT.md).
 
 ## License
 
-GPL-3.0-or-later. See [`LICENSE`](LICENSE).
+GPL-3.0-or-later. See
+[`LICENSE`](https://github.com/jturner-uofl/pysofra/blob/main/LICENSE).
 
 ## Citation
 
 If you use PySofra in academic work, please cite the project — see
-[`CITATION.cff`](CITATION.cff).
+[`CITATION.cff`](https://github.com/jturner-uofl/pysofra/blob/main/CITATION.cff).

{pysofra-0.1.0a1 → pysofra-0.1.0a2}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "pysofra"
-version = "0.1.0a1"
+version = "0.1.0a2"
 description = "Statistical reporting and table preparation framework for Python — the missing reporting layer."
 readme = "README.md"
 license = { text = "GPL-3.0-or-later" }

{pysofra-0.1.0a1 → pysofra-0.1.0a2}/src/pysofra/__init__.py

@@ -50,7 +50,7 @@ from .summary.tbl_summary import tbl_summary
 from .summary.tests import available_tests
 from .themes.registry import available_themes, register_theme
 
-__version__ = "0.1.0a1"
+__version__ = "0.1.0a2"
 
 __all__ = [
     "CellPart",