pysof 0.2.3__tar.gz → 0.2.5__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (375) hide show
  1. {pysof-0.2.3 → pysof-0.2.5}/Cargo.toml +2 -2
  2. {pysof-0.2.3 → pysof-0.2.5}/PKG-INFO +1 -1
  3. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/Cargo.toml +4 -4
  4. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/build.rs +2 -2
  5. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/r4.rs +10 -0
  6. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/r4b.rs +10 -0
  7. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/r5.rs +10 -0
  8. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/r6.rs +1423 -231
  9. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/search/loader.rs +51 -0
  10. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir-macro/Cargo.toml +1 -1
  11. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/Cargo.toml +3 -3
  12. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/README.md +63 -0
  13. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/aggregate_function.rs +1 -0
  14. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/cli.rs +4 -6
  15. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/distinct_functions.rs +150 -172
  16. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/error.rs +10 -0
  17. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/evaluator.rs +209 -31
  18. pysof-0.2.5/crates/fhirpath/src/fhir_type_hierarchy.rs +118 -0
  19. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/handlers.rs +47 -44
  20. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/lib.rs +414 -61
  21. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/models.rs +35 -0
  22. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/not_function.rs +2 -3
  23. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/polymorphic_access.rs +13 -3
  24. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/reference_key_functions.rs +77 -0
  25. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/resource_type.rs +169 -3
  26. pysof-0.2.5/crates/fhirpath/src/semantic_check.rs +585 -0
  27. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/server.rs +12 -3
  28. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/terminology_client.rs +114 -91
  29. pysof-0.2.5/crates/fhirpath/src/terminology_functions.rs +1540 -0
  30. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/ucum.rs +23 -0
  31. pysof-0.2.5/crates/fhirpath/tests/calendar_quantity_equality_tests.rs +63 -0
  32. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/common/mod.rs +1 -1
  33. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/common/parser.rs +12 -0
  34. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/common/runner.rs +85 -4
  35. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/tests-fhir-r4.xml +155 -0
  36. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r5/known-test-failures.json +0 -10
  37. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r5/rust-known-failures.json +0 -10
  38. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r5/tests-fhir-r5.xml +192 -6
  39. pysof-0.2.5/crates/fhirpath/tests/distinct_conformance_tests.rs +184 -0
  40. pysof-0.2.5/crates/fhirpath/tests/leading_identifier_cli_server.rs +90 -0
  41. pysof-0.2.5/crates/fhirpath/tests/leading_identifier_diagnostic.rs +320 -0
  42. pysof-0.2.5/crates/fhirpath/tests/nesting_depth.rs +197 -0
  43. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/polymorphic_tests.rs +35 -0
  44. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/r4_tests.rs +14 -2
  45. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/r5_tests.rs +7 -1
  46. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/valueless_primitive_tests.rs +15 -0
  47. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath-support/README.md +2 -0
  48. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath-support/src/lib.rs +44 -0
  49. {pysof-0.2.3 → pysof-0.2.5}/crates/observability/Cargo.toml +3 -2
  50. pysof-0.2.5/crates/observability/src/composite_metrics.rs +101 -0
  51. {pysof-0.2.3 → pysof-0.2.5}/crates/observability/src/dashboard.rs +180 -0
  52. {pysof-0.2.3 → pysof-0.2.5}/crates/observability/src/dashboard_counters.rs +38 -0
  53. {pysof-0.2.3 → pysof-0.2.5}/crates/observability/src/lib.rs +17 -1
  54. {pysof-0.2.3 → pysof-0.2.5}/crates/observability/src/metrics.rs +9 -4
  55. pysof-0.2.5/crates/observability/src/pool_metrics.rs +290 -0
  56. pysof-0.2.5/crates/observability/src/shutdown.rs +96 -0
  57. {pysof-0.2.3 → pysof-0.2.5}/crates/pysof/Cargo.toml +2 -2
  58. {pysof-0.2.3 → pysof-0.2.5}/crates/pysof/python-tests/test_error_handling.py +479 -438
  59. {pysof-0.2.3 → pysof-0.2.5/crates/pysof}/src/lib.rs +15 -2
  60. {pysof-0.2.3 → pysof-0.2.5/crates/pysof}/src/pysof/__init__.py +2 -2
  61. {pysof-0.2.3 → pysof-0.2.5}/crates/pysof/uv.lock +1 -1
  62. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/Cargo.toml +6 -6
  63. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/README.md +152 -33
  64. pysof-0.2.5/crates/sof/examples/parquet_peak_memory.rs +160 -0
  65. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/cli.rs +70 -44
  66. pysof-0.2.5/crates/sof/src/column_types.rs +477 -0
  67. pysof-0.2.5/crates/sof/src/columnar.rs +975 -0
  68. pysof-0.2.5/crates/sof/src/columnar_stream.rs +371 -0
  69. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/fhir_format.rs +17 -1
  70. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/handlers.rs +59 -6
  71. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/lib.rs +624 -479
  72. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/lint/tests.rs +1 -0
  73. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/lint.rs +9 -0
  74. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/models.rs +54 -36
  75. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/params.rs +154 -4
  76. pysof-0.2.5/crates/sof/src/parquet_schema.rs +950 -0
  77. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/server.rs +11 -3
  78. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/src/sqlquery/engine.rs +648 -11
  79. pysof-0.2.5/crates/sof/src/sqlquery/mod.rs +186 -0
  80. pysof-0.2.5/crates/sof/src/sqlquery/terminology.rs +499 -0
  81. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/server_tests.rs +356 -18
  82. pysof-0.2.5/crates/sof/tests/spec_examples.rs +220 -0
  83. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/sql-on-fhir/README.md +21 -11
  84. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-CodeSystemHierarchy.json +43 -0
  85. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-ConditionFlat.json +72 -0
  86. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-EncounterFlat.json +76 -0
  87. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-PatientAddresses.json +40 -0
  88. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-PatientAndContactAddressUnion.json +62 -0
  89. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-PatientDemographics.json +36 -0
  90. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-PatientNamesWithIndex.json +41 -0
  91. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-QuestionnaireResponseItems.json +71 -0
  92. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-ShareablePatientDemographics.json +51 -0
  93. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/ViewDefinition-UsCoreBloodPressures.json +88 -0
  94. pysof-0.2.5/crates/sof/tests/sql-on-fhir/examples/test-bundle.json +9 -0
  95. pysof-0.2.5/crates/sof/tests/terminology_session_tests.rs +569 -0
  96. pysof-0.2.5/crates/sof/tests/test_ansi_type_entry_points.rs +426 -0
  97. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_chunked_processing.rs +35 -0
  98. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_cli_file_source.rs +84 -0
  99. pysof-0.2.5/crates/sof/tests/test_parquet_column_types.rs +331 -0
  100. pysof-0.2.5/crates/sof/tests/test_parquet_integer_width.rs +131 -0
  101. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_parquet_server_options.rs +27 -5
  102. pysof-0.2.5/crates/sof/tests/test_parquet_streaming.rs +452 -0
  103. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_query_parameter_combinations.rs +1 -1
  104. {pysof-0.2.3/crates/pysof → pysof-0.2.5}/src/lib.rs +15 -2
  105. {pysof-0.2.3/crates/pysof → pysof-0.2.5}/src/pysof/__init__.py +2 -2
  106. pysof-0.2.5/src/pysof/_pysof.cpython-314-x86_64-linux-gnu.so +4 -0
  107. pysof-0.2.3/crates/fhirpath/src/fhir_type_hierarchy.rs +0 -60
  108. pysof-0.2.3/crates/fhirpath/src/terminology_functions.rs +0 -604
  109. pysof-0.2.3/crates/sof/src/parquet_schema.rs +0 -390
  110. pysof-0.2.3/crates/sof/src/sqlquery/mod.rs +0 -84
  111. {pysof-0.2.3 → pysof-0.2.5}/README.md +0 -0
  112. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/README.md +0 -0
  113. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment/loader.rs +0 -0
  114. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment/mod.rs +0 -0
  115. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment_expressions/mod.rs +0 -0
  116. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment_expressions/r4.rs +0 -0
  117. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment_expressions/r4b.rs +0 -0
  118. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment_expressions/r5.rs +0 -0
  119. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/compartment_expressions/r6.rs +0 -0
  120. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/lib.rs +0 -0
  121. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/parameters.rs +0 -0
  122. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/r6.rs.template +0 -0
  123. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/search/errors.rs +0 -0
  124. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/search/mod.rs +0 -0
  125. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/search/registry.rs +0 -0
  126. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/src/search/types.rs +0 -0
  127. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/tests/integer_string_integration.rs +0 -0
  128. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/tests/simple_null_test.rs +0 -0
  129. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir/tests/test_contained_stack.rs +0 -0
  130. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir-macro/README.md +0 -0
  131. {pysof-0.2.3 → pysof-0.2.5}/crates/fhir-macro/src/lib.rs +0 -0
  132. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/PRECISION_LIMITATION.md +0 -0
  133. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/benches/cli_benches.rs +0 -0
  134. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/benches/evaluator_benches.rs +0 -0
  135. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/benches/parser_benches.rs +0 -0
  136. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/benches/server_benches.rs +0 -0
  137. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/examples/test_ucum.rs +0 -0
  138. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/grammar/fhirpath.g4 +0 -0
  139. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/server-api.md +0 -0
  140. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/aggregate_math_functions.rs +0 -0
  141. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/bin/fhirpath-cli.rs +0 -0
  142. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/bin/fhirpath-server.rs +0 -0
  143. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/boolean_functions.rs +0 -0
  144. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/boundary_functions.rs +0 -0
  145. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/collection_functions.rs +0 -0
  146. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/collection_navigation.rs +0 -0
  147. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/contains_function.rs +0 -0
  148. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/conversion_functions.rs +0 -0
  149. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/date_operation.rs +0 -0
  150. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/datetime_impl.rs +0 -0
  151. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/debug_trace.rs +0 -0
  152. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/extension_function.rs +0 -0
  153. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/format_functions.rs +0 -0
  154. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/functions.rs +0 -0
  155. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/interval_functions.rs +0 -0
  156. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/json_utils.rs +0 -0
  157. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/long_conversion.rs +0 -0
  158. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/parse_debug.rs +0 -0
  159. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/parser.rs +0 -0
  160. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/repeat_all_function.rs +0 -0
  161. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/repeat_function.rs +0 -0
  162. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/resolve_function.rs +0 -0
  163. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/set_operations.rs +0 -0
  164. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/subset_functions.rs +0 -0
  165. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/trace_function.rs +0 -0
  166. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/type_function.rs +0 -0
  167. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/src/type_inference.rs +0 -0
  168. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/all_function_tests.rs +0 -0
  169. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/boundary_debug_tests.rs +0 -0
  170. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/boundary_function_integration_tests.rs +0 -0
  171. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/builtin_functions_evaluator_tests.rs +0 -0
  172. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/cli_version_test.rs +0 -0
  173. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/comment_test.rs +0 -0
  174. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/common/context.rs +0 -0
  175. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/common/known_failures.rs +0 -0
  176. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/context_trace_test.rs +0 -0
  177. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/observation-example.json +0 -0
  178. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/observation-example.xml +0 -0
  179. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/patient-example.json +0 -0
  180. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/patient-example.xml +0 -0
  181. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/questionnaire-example.json +0 -0
  182. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/questionnaire-example.xml +0 -0
  183. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/valueset-example-expansion.json +0 -0
  184. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/input/valueset-example-expansion.xml +0 -0
  185. {pysof-0.2.3 → pysof-0.2.5}/crates/fhirpath/tests/data/r4/rust-known-failures.json +0 -0
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  361. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_limit_parameter_body.rs +0 -0
  362. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_ndjson_input.rs +0 -0
  363. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_parallel_working.rs +0 -0
  364. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_parameter_validation.rs +0 -0
  365. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_parquet_export.rs +0 -0
  366. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_parquet_large_dataset.rs +0 -0
  367. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_patient_reference_formats.rs +0 -0
  368. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_run_operation_parameters.rs +0 -0
  369. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_runner_integration.rs +0 -0
  370. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_shortened_format_names.rs +0 -0
  371. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_where_clause_validation.rs +0 -0
  372. {pysof-0.2.3 → pysof-0.2.5}/crates/sof/tests/test_x_ndjson_support.rs +0 -0
  373. {pysof-0.2.3 → pysof-0.2.5}/pyproject.toml +0 -0
  374. {pysof-0.2.3 → pysof-0.2.5}/src/pysof/_pysof.pyi +0 -0
  375. {pysof-0.2.3 → pysof-0.2.5}/src/pysof/py.typed +0 -0
@@ -17,8 +17,8 @@ crate-type = ["cdylib"]
17
17
 
18
18
  [dependencies]
19
19
  pyo3 = { version = ">=0.29", features = ["extension-module", "generate-import-lib"] }
20
- helios-sof = { path = "../sof", version = "0.2.3", default-features = false }
21
- helios-fhir = { path = "../fhir", version = "0.2.3", default-features = false }
20
+ helios-sof = { path = "../sof", version = "0.2.5", default-features = false }
21
+ helios-fhir = { path = "../fhir", version = "0.2.5", default-features = false }
22
22
  serde = { workspace = true }
23
23
  serde_json = { workspace = true }
24
24
  chrono = { version = "0.4", features = ["serde"] }
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pysof
3
- Version: 0.2.3
3
+ Version: 0.2.5
4
4
  Classifier: Programming Language :: Python :: 3
5
5
  Classifier: Programming Language :: Python :: 3.10
6
6
  Classifier: Programming Language :: Python :: 3.11
@@ -24,9 +24,9 @@ xml = ["helios-serde-support/xml"]
24
24
  serde = { workspace = true }
25
25
  serde_json = { workspace = true, features = ["raw_value"] }
26
26
  clap = { version = "4.0", features = ["derive"] }
27
- helios-fhir-macro = { path = "../fhir-macro", version = "0.2.3" }
28
- helios-serde-support = { path = "../serde-support", version = "0.2.3" }
29
- helios-fhirpath-support = { path = "../fhirpath-support", version = "0.2.3" }
27
+ helios-fhir-macro = { path = "../fhir-macro", version = "0.2.5" }
28
+ helios-serde-support = { path = "../serde-support", version = "0.2.5" }
29
+ helios-fhirpath-support = { path = "../fhirpath-support", version = "0.2.5" }
30
30
  time = "0.3"
31
31
  chrono = { workspace = true }
32
32
  # Re-add serde-with-arbitrary-precision, keep macros
@@ -41,7 +41,7 @@ rust_decimal_macros = "1.0"
41
41
 
42
42
  [build-dependencies]
43
43
  reqwest = { version = "0.12", features = ["blocking"] }
44
- zip = "0.6"
44
+ zip = "9"
45
45
 
46
46
  [package.metadata.docs.rs]
47
47
  all-features = true
@@ -175,9 +175,9 @@ fn extract_and_clean(zip_path: &PathBuf, resources_dir: &PathBuf, zip_filename:
175
175
  // Extract everything
176
176
  for i in 0..archive.len() {
177
177
  let mut file = archive.by_index(i).unwrap();
178
- let outpath = resources_dir.join(file.mangled_name());
178
+ let outpath = resources_dir.join(file.mangled_name().unwrap());
179
179
 
180
- if file.name().ends_with('/') {
180
+ if file.is_dir() {
181
181
  fs::create_dir_all(&outpath).unwrap();
182
182
  } else {
183
183
  if let Some(p) = outpath.parent() {
@@ -165598,6 +165598,15 @@ pub enum ViewDefinitionVersionAlgorithm {
165598
165598
  summary_fields = "id,meta,implicit_rules,modifier_extension,url,identifier,version,version_algorithm,name,title,status,experimental,date,publisher,contact,use_context,jurisdiction,effective_period"
165599
165599
  )]
165600
165600
  pub struct ViewDefinition {
165601
+ /// Canonical of the definition of this additional resource
165602
+ ///
165603
+ /// The versioned canonical URL of the StructureDefinition that defines this
165604
+ /// resource type. Instances of an additional resource - a resource type defined
165605
+ /// outside the core FHIR specification - carry it alongside resourceType.
165606
+ ///
165607
+ /// ## Cardinality: Optional (0..1)
165608
+ #[fhir_serde(rename = "resourceDefinition")]
165609
+ pub resource_definition: Option<Canonical>,
165601
165610
  /// Logical id of this artifact
165602
165611
  ///
165603
165612
  /// The logical id of the resource, as used in the URL for the resource. Once
@@ -190545,6 +190554,7 @@ pub static FIELD_TYPES: &[(&str, &str, &str, bool)] = &[
190545
190554
  ("ViewDefinition", "purpose", "markdown", false),
190546
190555
  ("ViewDefinition", "relatedArtifact", "RelatedArtifact", true),
190547
190556
  ("ViewDefinition", "resource", "code", false),
190557
+ ("ViewDefinition", "resourceDefinition", "canonical", false),
190548
190558
  ("ViewDefinition", "reviewer", "ContactDetail", true),
190549
190559
  ("ViewDefinition", "select", "ViewDefinitionSelect", true),
190550
190560
  ("ViewDefinition", "status", "code", false),
@@ -169276,6 +169276,15 @@ pub enum ViewDefinitionVersionAlgorithm {
169276
169276
  summary_fields = "id,meta,implicit_rules,modifier_extension,url,identifier,version,version_algorithm,name,title,status,experimental,date,publisher,contact,use_context,jurisdiction,effective_period"
169277
169277
  )]
169278
169278
  pub struct ViewDefinition {
169279
+ /// Canonical of the definition of this additional resource
169280
+ ///
169281
+ /// The versioned canonical URL of the StructureDefinition that defines this
169282
+ /// resource type. Instances of an additional resource - a resource type defined
169283
+ /// outside the core FHIR specification - carry it alongside resourceType.
169284
+ ///
169285
+ /// ## Cardinality: Optional (0..1)
169286
+ #[fhir_serde(rename = "resourceDefinition")]
169287
+ pub resource_definition: Option<Canonical>,
169279
169288
  /// Logical id of this artifact
169280
169289
  ///
169281
169290
  /// The logical id of the resource, as used in the URL for the resource. Once
@@ -194576,6 +194585,7 @@ pub static FIELD_TYPES: &[(&str, &str, &str, bool)] = &[
194576
194585
  ("ViewDefinition", "purpose", "markdown", false),
194577
194586
  ("ViewDefinition", "relatedArtifact", "RelatedArtifact", true),
194578
194587
  ("ViewDefinition", "resource", "code", false),
194588
+ ("ViewDefinition", "resourceDefinition", "canonical", false),
194579
194589
  ("ViewDefinition", "reviewer", "ContactDetail", true),
194580
194590
  ("ViewDefinition", "select", "ViewDefinitionSelect", true),
194581
194591
  ("ViewDefinition", "status", "code", false),
@@ -212700,6 +212700,15 @@ pub enum ViewDefinitionVersionAlgorithm {
212700
212700
  summary_fields = "id,meta,implicit_rules,modifier_extension,url,identifier,version,version_algorithm,name,title,status,experimental,date,publisher,contact,use_context,jurisdiction,effective_period"
212701
212701
  )]
212702
212702
  pub struct ViewDefinition {
212703
+ /// Canonical of the definition of this additional resource
212704
+ ///
212705
+ /// The versioned canonical URL of the StructureDefinition that defines this
212706
+ /// resource type. Instances of an additional resource - a resource type defined
212707
+ /// outside the core FHIR specification - carry it alongside resourceType.
212708
+ ///
212709
+ /// ## Cardinality: Optional (0..1)
212710
+ #[fhir_serde(rename = "resourceDefinition")]
212711
+ pub resource_definition: Option<Canonical>,
212703
212712
  /// Logical id of this artifact
212704
212713
  ///
212705
212714
  /// The logical id of the resource, as used in the URL for the resource. Once
@@ -244724,6 +244733,7 @@ pub static FIELD_TYPES: &[(&str, &str, &str, bool)] = &[
244724
244733
  ("ViewDefinition", "purpose", "markdown", false),
244725
244734
  ("ViewDefinition", "relatedArtifact", "RelatedArtifact", true),
244726
244735
  ("ViewDefinition", "resource", "code", false),
244736
+ ("ViewDefinition", "resourceDefinition", "canonical", false),
244727
244737
  ("ViewDefinition", "reviewer", "ContactDetail", true),
244728
244738
  ("ViewDefinition", "select", "ViewDefinitionSelect", true),
244729
244739
  ("ViewDefinition", "status", "code", false),