pysits 2.0.0.dev5__tar.gz → 2.0.0.dev7__tar.gz

{pysits-2.0.0.dev5 → pysits-2.0.0.dev7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.5
 Name: pysits
-Version: 2.0.0.dev5
+Version: 2.0.0.dev7
 Summary: Python wrapper for the sits R package
 Project-URL: Homepage, https://github.com/e-sensing/pysits
 Project-URL: Issue Tracker, https://github.com/e-sensing/pysits/issues

{pysits-2.0.0.dev5 → pysits-2.0.0.dev7}/pyproject.toml

@@ -17,7 +17,7 @@
 
 [project]
 name = "pysits"
-version = "2.0.0.dev5"
+version = "2.0.0.dev7"
 description = "Python wrapper for the sits R package"
 readme = "README.md"
 requires-python = ">=3.10,<4"

{pysits-2.0.0.dev5 → pysits-2.0.0.dev7}/pysits/__init__.py

@@ -21,6 +21,11 @@
 # happen before anything imports `pyarrow` or loads the R `arrow` package.
 # Keep this import above the others. See `pysits.backend.arrow`.
 from .backend import arrow as _arrow  # noqa: F401
+
+# Importing `backend.rinterface` first silences the notice `rpy2` logs while it
+# is being imported, when it falls back from API to ABI mode. Keep this import
+# above anything that imports `rpy2`
+from .backend.rinterface import r_interface_mode
 from .conversions.dsl.mask import MaskValue
 from .conversions.dsl.tuning import hparam
 from .settings import __version__
@@ -106,6 +111,7 @@ from .sits.ml import (
     sits_pre_train,
     sits_resnet,
     sits_rfor,
+    sits_ssl_barlow_twins,
     sits_ssl_lejepa,
     sits_ssl_mae,
     sits_ssl_vicreg,
@@ -164,6 +170,7 @@ __all__ = (
     "sits_encode",
     "sits_ssl_mae",
     "sits_ssl_lejepa",
+    "sits_ssl_barlow_twins",
     "sits_ssl_vicreg",
     "sits_barlow_twins",
     "sits_contrastive_learning",
@@ -288,6 +295,7 @@ __all__ = (
     "read_rds",
     "r_package_dir",
     "r_set_seed",
+    "r_interface_mode",
     "load_samples",
     # Package settings
     "__version__",

pysits-2.0.0.dev7/pysits/backend/rinterface.py

@@ -0,0 +1,49 @@
+#
+# Copyright (C) 2025 sits developers.
+#
+# This program is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+
+"""R interface used by ``pysits``."""
+
+import logging
+
+#
+# Logger `rpy2` uses to report the API to ABI fallback
+#
+RPY2_OPENRLIB_LOGGER = "rpy2.rinterface_lib.openrlib"
+
+#
+# Get logger from rpy2
+#
+_logger = logging.getLogger(RPY2_OPENRLIB_LOGGER)
+
+# Set on import: the notice is emitted when `rpy2` is first imported
+# If a level is already set on the logger, we do not change it. This
+# allows users to opt back in with:
+# logging.getLogger(RPY2_OPENRLIB_LOGGER).setLevel(logging.DEBUG)
+if _logger.level == logging.NOTSET:
+    _logger.setLevel(logging.ERROR)
+
+
+def r_interface_mode() -> str:
+    """Report the ``cffi`` mode ``rpy2`` is using to reach R.
+
+    Returns:
+        str: ``"API"`` when `rpy2` loaded its compiled extension, `"ABI"`
+                when it resolves R symbols at run time.
+    """
+    from rpy2.rinterface_lib.openrlib import cffi_mode
+
+    return cffi_mode.value

{pysits-2.0.0.dev5 → pysits-2.0.0.dev7}/pysits/sits/ml.py

@@ -84,6 +84,7 @@ sits_lightgbm = closure_factory("sits_lightgbm")
 sits_ssl_mae = closure_factory("sits_ssl_mae", converters=dl_converters)
 sits_ssl_lejepa = closure_factory("sits_ssl_lejepa", converters=dl_converters)
 sits_ssl_vicreg = closure_factory("sits_ssl_vicreg", converters=dl_converters)
+sits_ssl_barlow_twins = closure_factory("sits_ssl_barlow_twins", converters=dl_converters)
 
 sits_barlow_twins = closure_factory("sits_barlow_twins", converters=dl_converters)
 sits_contrastive_learning = closure_factory(

pysits-2.0.0.dev7/tests/test_backend.py

@@ -0,0 +1,42 @@
+#
+# Copyright (C) 2025 sits developers.
+#
+# This program is free software; you can redistribute it and/or modify it
+# under the terms of the GNU General Public License as published by
+# the Free Software Foundation; either version 2 of the License, or
+# (at your option) any later version.
+#
+# This program is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+# GNU General Public License for more details.
+#
+# You should have received a copy of the GNU General Public License
+# along with this program; if not, see <https://www.gnu.org/licenses/>.
+#
+
+"""Tests for the R interface backend."""
+
+import subprocess
+import sys
+
+from pysits import r_interface_mode
+
+
+def test_import_pysits_reports_no_cffi_fallback():
+    """Importing `pysits` must not print `rpy2` API/ABI fallback notices."""
+    proc = subprocess.run(
+        [sys.executable, "-c", "import pysits"],
+        capture_output=True,
+        text=True,
+        check=False,
+    )
+
+    assert proc.returncode == 0, proc.stderr
+    assert "Error importing in API mode" not in proc.stderr
+    assert "Trying to import in ABI mode" not in proc.stderr
+
+
+def test_r_interface_mode_reports_a_supported_mode():
+    """interface mode must return a valid value."""
+    assert r_interface_mode() in {"API", "ABI"}

{pysits-2.0.0.dev5 → pysits-2.0.0.dev7}/tests/test_embedding.py

@@ -41,6 +41,7 @@ from pysits.sits.ml import (
     sits_rfor,
     sits_ssl_lejepa,
     sits_ssl_mae,
+    sits_ssl_barlow_twins,
     sits_ssl_vicreg,
     sits_train,
 )
@@ -59,6 +60,7 @@ ALL_ENCODER_METHODS = [
     sits_ssl_mae,
     sits_ssl_lejepa,
     sits_ssl_vicreg,
+    sits_ssl_barlow_twins,
     sits_contrastive_learning,
     sits_barlow_twins,
 ]

{pysits-2.0.0.dev5 → pysits-2.0.0.dev7}/uv.lock

@@ -296,7 +296,7 @@ name = "click-plugins"
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-    { name = "certifi", marker = "python_full_version >= '3.11'" },
+    { name = "certifi" },
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+version = "2.0.0.dev7"
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-    { name = "pyparsing", marker = "python_full_version < '3.12'" },
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+    { name = "attrs" },
+    { name = "certifi" },
+    { name = "click" },
+    { name = "click-plugins" },
+    { name = "cligj" },
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+    { name = "affine" },
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+    { name = "click" },
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pysits-2.0.0.dev5/.claude/settings.local.json

@@ -1,5 +0,0 @@
-{
-  "disabledMcpjsonServers": [
-    "geo-infrastructure"
-  ]
-}