pysec2pri 0.3.1.dev0__tar.gz → 0.3.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (51) hide show
  1. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/PKG-INFO +4 -3
  2. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/README.md +3 -2
  3. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/pyproject.toml +2 -2
  4. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/version.py +1 -1
  5. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/LICENSE +0 -0
  6. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/__init__.py +0 -0
  7. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/__main__.py +0 -0
  8. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/api.py +0 -0
  9. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/cli.py +0 -0
  10. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/__init__.py +0 -0
  11. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/chebi.yaml +0 -0
  12. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/ensembl.yaml +0 -0
  13. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/hgnc.yaml +0 -0
  14. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/hmdb_metabolites.yaml +0 -0
  15. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/hmdb_proteins.yaml +0 -0
  16. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/ncbi.yaml +0 -0
  17. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/uniprot.yaml +0 -0
  18. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/vgnc.yaml +0 -0
  19. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/config/wikidata.yaml +0 -0
  20. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/consolidate.py +0 -0
  21. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/constants.py +0 -0
  22. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/download.py +0 -0
  23. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/__init__.py +0 -0
  24. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/chebi.py +0 -0
  25. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/ensembl.py +0 -0
  26. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/hgnc.py +0 -0
  27. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/hmdb.py +0 -0
  28. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/ncbi.py +0 -0
  29. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/downloads/uniprot.py +0 -0
  30. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/exports.py +0 -0
  31. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/logging.py +0 -0
  32. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/__init__.py +0 -0
  33. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/_nomenclature.py +0 -0
  34. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/base.py +0 -0
  35. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/chebi.py +0 -0
  36. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/ensembl.py +0 -0
  37. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/hgnc.py +0 -0
  38. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/hmdb.py +0 -0
  39. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/ncbi.py +0 -0
  40. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/uniprot.py +0 -0
  41. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/vgnc.py +0 -0
  42. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/parsers/wikidata.py +0 -0
  43. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/py.typed +0 -0
  44. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/__init__.py +0 -0
  45. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/chemical_redirects.rq +0 -0
  46. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/chemical_redirects_test.rq +0 -0
  47. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/gene_redirects.rq +0 -0
  48. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/gene_redirects_test.rq +0 -0
  49. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/protein_redirects.rq +0 -0
  50. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/queries/protein_redirects_test.rq +0 -0
  51. {pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/update.py +0 -0
{pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pysec2pri
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- Version: 0.3.1.dev0
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+ Version: 0.3.3
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  Summary: Secondary to primary identifier mapping
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  Keywords: snekpack,cookiecutter
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  Author: Javier Millán Acosta
@@ -77,8 +77,9 @@ Description-Content-Type: text/markdown
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  Create and use mapping files for secondary (retired/withdrawn) biological
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  database identifiers and labels to primary (current) identifiers and labels.
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- Outputs mappings in [SSSOM format](https://w3id.org/sssom) by default. Subjects
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- are secondary, objects are primary.
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+ Outputs mappings in [SSSOM format](https://w3id.org/sssom) by default. Subject
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+ ids and labels (`subject_id`, `subject_label`) are secondary, objects are
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+ primary.
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  ## Installation
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{pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/README.md RENAMED
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  Create and use mapping files for secondary (retired/withdrawn) biological
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  database identifiers and labels to primary (current) identifiers and labels.
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- Outputs mappings in [SSSOM format](https://w3id.org/sssom) by default. Subjects
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- are secondary, objects are primary.
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+ Outputs mappings in [SSSOM format](https://w3id.org/sssom) by default. Subject
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+ ids and labels (`subject_id`, `subject_label`) are secondary, objects are
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+ primary.
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  ## Installation
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{pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/pyproject.toml RENAMED
@@ -7,7 +7,7 @@ build-backend = "uv_build"
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  [project]
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  name = "pysec2pri"
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- version = "0.3.1-dev"
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+ version = "0.3.3"
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  description = "Secondary to primary identifier mapping"
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  readme = "README.md"
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  authors = [
@@ -259,7 +259,7 @@ known-first-party = [
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  docstring-code-format = true
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  [tool.bumpversion]
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- current_version = "0.3.1-dev"
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+ current_version = "0.3.3"
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  parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
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  serialize = [
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  "{major}.{minor}.{patch}-{release}+{build}",
{pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/src/pysec2pri/version.py RENAMED
@@ -12,7 +12,7 @@ __all__ = [
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  "get_version",
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  ]
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- VERSION = "0.3.1-dev"
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+ VERSION = "0.3.3"
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  def get_git_hash() -> str:
{pysec2pri-0.3.1.dev0 → pysec2pri-0.3.3}/LICENSE RENAMED
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