pyrollmatch 0.0.3__tar.gz

pyrollmatch-0.0.3/.github/workflows/publish.yml

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+name: Build & Publish
+
+on:
+  release:
+    types: [published]
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install build tools
+        run: pip install build twine
+
+      - name: Build wheel and sdist
+        run: python -m build
+
+      - name: Check distributions
+        run: twine check dist/*
+
+      - name: Upload artifacts
+        uses: actions/upload-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+  # pyrollmatch is pure Python — one wheel works on all platforms.
+  verify:
+    needs: build
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.10", "3.12"]
+    runs-on: ${{ matrix.os }}
+    steps:
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Download artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+      - name: Install wheel
+        shell: bash
+        run: pip install dist/*.whl
+
+      - name: Smoke test
+        shell: bash
+        run: |
+          python -c "
+          import pyrollmatch
+          print(f'pyrollmatch {pyrollmatch.__version__} loaded successfully')
+          from pyrollmatch.score import SUPPORTED_MODELS
+          print(f'Models: {SUPPORTED_MODELS}')
+          "
+
+  upload-release:
+    needs: [build, verify]
+    runs-on: ubuntu-latest
+    if: github.event_name == 'release'
+    permissions:
+      contents: write
+    steps:
+      - name: Download artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+      - name: Upload to GitHub Release
+        env:
+          GH_TOKEN: ${{ github.token }}
+        run: gh release upload "${{ github.event.release.tag_name }}" dist/* --clobber --repo "${{ github.repository }}"
+
+  publish-pypi:
+    needs: [build, verify]
+    runs-on: ubuntu-latest
+    if: github.event_name == 'release'
+    permissions:
+      id-token: write
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pyrollmatch
+    steps:
+      - name: Download artifacts
+        uses: actions/download-artifact@v4
+        with:
+          name: dist
+          path: dist/
+
+      - name: Publish to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

pyrollmatch-0.0.3/.github/workflows/test.yml

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+name: Tests
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+jobs:
+  test:
+    runs-on: ubuntu-latest
+    strategy:
+      matrix:
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e ".[dev]"
+
+      - name: Run tests
+        run: |
+          python -m pytest tests/test_smoke.py tests/test_robust.py -v
+
+  test-stress:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install -e ".[dev]"
+
+      - name: Run stress tests
+        run: |
+          python -m pytest tests/test_stress.py -v

pyrollmatch-0.0.3/.gitignore

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+__pycache__/
+*.pyc
+.venv/
+*.egg-info/
+dist/
+build/
+.pytest_cache/
+

pyrollmatch-0.0.3/LICENSE

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+MIT License
+
+Copyright (c) 2026 Alan Huang
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

pyrollmatch-0.0.3/PKG-INFO

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+Metadata-Version: 2.4
+Name: pyrollmatch
+Version: 0.0.3
+Summary: Fast rolling entry matching for staggered adoption studies using polars + numpy
+Author: Alan Huang
+License-Expression: MIT
+License-File: LICENSE
+Keywords: causal-inference,difference-in-differences,matching,propensity-score,rolling-entry,staggered-adoption,treatment-effects
+Classifier: Development Status :: 3 - Alpha
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Topic :: Scientific/Engineering :: Mathematics
+Requires-Python: >=3.10
+Requires-Dist: numpy>=1.24
+Requires-Dist: polars>=1.0
+Requires-Dist: scikit-learn>=1.3
+Requires-Dist: scipy>=1.10
+Provides-Extra: dev
+Requires-Dist: pytest-xdist; extra == 'dev'
+Requires-Dist: pytest>=7.0; extra == 'dev'
+Provides-Extra: r-comparison
+Requires-Dist: rpy2>=3.5; extra == 'r-comparison'
+Description-Content-Type: text/markdown
+
+# pyrollmatch
+
+> **Alpha** (v0.1.x) — This package is in early development. Results have been validated against R rollmatch on synthetic data, but edge cases may remain. APIs are not stable and may change without notice. **Please verify critical results independently.**
+
+Fast rolling entry matching for staggered adoption studies in Python.
+
+High-performance reimplementation of the R [rollmatch](https://github.com/RTIInternational/rollmatch) package using **polars** + **numpy**, with 8 propensity score models and comprehensive post-matching diagnostics.
+
+| | R rollmatch | pyrollmatch |
+|---|---|---|
+| Max scale | ~5K treated (crashes) | **90K+ treated** |
+| 10K × 30K | OOM (5.8B row join) | **1.7 seconds** |
+| Scoring models | Logistic only | **8 models** |
+| Diagnostics | SMD only | SMD + t-test + VR + KS + TOST |
+| Data library | dplyr (deprecated APIs) | polars |
+
+## Installation
+
+```bash
+pip install pyrollmatch
+```
+
+**From source:**
+```bash
+git clone https://github.com/AlanHuang99/pyrollmatch.git
+cd pyrollmatch
+pip install -e ".[dev]"
+```
+
+## Quick Start
+
+```python
+import polars as pl
+from pyrollmatch import rollmatch, alpha_sweep
+
+# Panel data: unit × time with treatment indicator
+data = pl.read_parquet("panel_data.parquet")
+
+# Rolling entry matching
+result = rollmatch(
+    data,
+    treat="treat",              # binary treatment group indicator (1=treated, 0=control)
+    tm="time_period",           # time period (integer)
+    entry="entry_time",         # treatment onset period for treated units;
+                                # for controls, set to any value > max(time_period)
+    id="unit_id",               # unit identifier
+    covariates=["x1", "x2"],    # matching covariates
+    lookback=1,                 # periods to look back for baseline
+    alpha=0.1,                  # caliper = alpha × pooled_SD
+    num_matches=3,              # controls per treated
+    model_type="logistic",      # propensity score model
+)
+
+# Results
+result.balance      # SMD table (polars DataFrame)
+result.weights      # unit_id → weight (polars DataFrame)
+result.matched_data # treat_id, control_id, difference
+```
+
+### Alpha Sweep
+
+Find the optimal caliper automatically:
+
+```python
+summary, best = alpha_sweep(
+    data, treat="treat", tm="time", entry="entry_time", id="unit_id",
+    covariates=["x1", "x2", "x3"],
+    alphas=[0.01, 0.02, 0.05, 0.1, 0.15, 0.2],
+)
+# summary: alpha, match_rate, max|SMD|, all_pass
+# best: RollmatchResult from the best alpha
+```
+
+### Post-Matching Diagnostics
+
+```python
+from pyrollmatch import balance_test, equivalence_test
+from pyrollmatch import reduce_data, score_data
+
+reduced = reduce_data(data, "treat", "time", "entry_time", "unit_id")
+scored = score_data(reduced, ["x1", "x2", "x3"], "treat")
+
+# SMD + t-test + variance ratio + KS test
+diag = balance_test(scored, result.matched_data,
+                    "treat", "unit_id", "time", ["x1", "x2", "x3"])
+
+# TOST equivalence test (Hartman & Hidalgo 2018)
+equiv = equivalence_test(scored, result.matched_data,
+                         "treat", "unit_id", "time", ["x1", "x2", "x3"])
+```
+
+## Propensity Score Models
+
+8 scoring methods, all accessible via the `model_type` parameter:
+
+| Model | `model_type` | Description | Best for |
+|---|---|---|---|
+| **Logistic** | `"logistic"` | Standard logistic regression (default) | Most cases |
+| **Probit** | `"probit"` | Probit model (Φ⁻¹ transform) | Robustness check |
+| **GBM** | `"gbm"` | Gradient boosting (HistGradientBoosting) | Non-linear relationships |
+| **Random Forest** | `"rf"` | Random forest classifier | High-dimensional, interactions |
+| **Lasso** | `"lasso"` | L1-regularized logistic | Variable selection |
+| **Ridge** | `"ridge"` | L2-regularized logistic | Multicollinearity |
+| **ElasticNet** | `"elasticnet"` | L1+L2 regularized logistic | Combined regularization |
+| **Mahalanobis** | `"mahalanobis"` | No propensity model — covariate distance | Direct covariate matching |
+
+```python
+# Use gradient boosting for propensity scores
+result = rollmatch(data, ..., model_type="gbm")
+
+# Use Mahalanobis distance (no propensity model)
+result = rollmatch(data, ..., model_type="mahalanobis")
+```
+
+## How It Works
+
+### Rolling Entry Matching
+
+For staggered adoption, each treated unit enters at a different time. Rolling entry matching:
+
+1. **`reduce_data()`** — For each treated unit at entry time *t*, select covariates at *t − lookback*. Controls get one observation per treatment entry period.
+
+2. **`score_data()`** — Fit propensity model, compute logit-transformed scores.
+
+3. **`match_all_periods()`** — For each time period, match treated to closest controls within caliper. Uses **block-vectorized numpy broadcasting** (not full cross-join).
+
+4. **`compute_balance()`** — Compare covariate means/SDs before and after matching.
+
+### Key Optimization
+
+R's bottleneck: `inner_join(treated, controls, by=time)` creates N_treated × N_controls rows.
+
+pyrollmatch instead processes treated in **blocks** via numpy broadcasting:
+```
+Block of 2000 treated × 64K controls = 128M distances = ~1 GB
+```
+Never materializes the full cross-product as a DataFrame.
+
+## Data Format
+
+Input must be a `polars.DataFrame` in **long panel format** (one row per unit per time period):
+
+| Column | Type | Description |
+|---|---|---|
+| `id` | int or str | Unit identifier (e.g., individual, firm, repository) |
+| `tm` | int | Time period, must be integer and monotonically increasing (e.g., 1, 2, ..., 20) |
+| `treat` | int (0 or 1) | **Time-invariant treatment group indicator.** `1` = unit that eventually receives treatment, `0` = unit that never receives treatment. This is NOT a time-varying treatment status — it labels the *group*, not whether treatment is currently active. |
+| `entry` | int | **Treatment onset period** for treated units (the time period when treatment begins). For control units, set this to any value **strictly greater** than the maximum time period in your data. For example, if your panel spans periods 1–20, use `entry=99` or `entry=999` for controls. The specific value does not matter as long as it exceeds `max(tm)`. |
+| covariates | float | Matching variables (e.g., pre-computed rolling means of activity measures) |
+
+**Example:**
+```
+unit_id | time | treat | entry_time | x1   | x2
+--------|------|-------|------------|------|-----
+1       | 1    | 1     | 5          | 2.3  | 1.1   <- treated, enters at period 5
+1       | 2    | 1     | 5          | 2.5  | 1.0
+...
+1       | 5    | 1     | 5          | 4.1  | 1.8   <- treatment starts here
+...
+101     | 1    | 0     | 99         | 1.8  | 0.9   <- control, entry=99 (sentinel)
+101     | 2    | 0     | 99         | 1.9  | 1.0
+```
+
+## API Reference
+
+### Core Functions
+
+| Function | Description |
+|---|---|
+| `rollmatch()` | Full rolling entry matching pipeline |
+| `alpha_sweep()` | Try multiple calipers, select best |
+| `reduce_data()` | Construct quasi-panel for matching |
+| `score_data()` | Compute propensity scores (8 models) |
+
+### Diagnostics
+
+| Function | Description |
+|---|---|
+| `balance_test()` | SMD + t-test + variance ratio + KS test |
+| `equivalence_test()` | TOST equivalence test (Hartman & Hidalgo 2018) |
+| `compute_balance()` | Covariate balance table |
+| `smd_table()` | Print formatted SMD table |
+
+### RollmatchResult
+
+| Attribute | Type | Description |
+|---|---|---|
+| `matched_data` | `pl.DataFrame` | `treat_id`, `control_id`, `difference` |
+| `balance` | `pl.DataFrame` | SMD for each covariate |
+| `weights` | `pl.DataFrame` | `id`, `weight` |
+| `n_treated_matched` | `int` | Number matched |
+| `n_treated_total` | `int` | Total treated |
+| `alpha` | `float` | Caliper used |
+
+## Validation Against R rollmatch
+
+Tested on identical synthetic data across 15 configurations:
+
+| Metric | Result |
+|---|---|
+| Propensity score correlation | **≥ 0.9999** across all configs |
+| Match count agreement | Within ±3% |
+| Balance quality (max\|SMD\|) | Both achieve < 0.05 |
+
+Pair-level overlap varies by caliper tightness (3%–71%) due to different GLM solvers (sklearn vs R glm). This is expected — **balance quality is what matters, not pair identity**.
+
+> **Note on matching algorithm**: Our greedy matching processes treated units sequentially (per-treated nearest neighbor), while R rollmatch uses a global greedy approach (best-first across all treated). Both are valid greedy algorithms, but may produce different match assignments. Balance quality is comparable.
+
+## Performance
+
+| Scale | Runtime | Match rate |
+|---|---:|---:|
+| 500 × 2,000 | 0.03s | 100% |
+| 1,000 × 3,000 | 0.05s | 100% |
+| 5,000 × 15,000 | 0.10s | 100% |
+| 10,000 × 30,000 | 1.7s | 99.99% |
+
+R rollmatch crashes at 10K treated due to dplyr's 2.1B row limit.
+
+## Design Principles
+
+- **Polars-first**: Native polars DataFrames throughout. No pandas dependency.
+- **Reproducible**: Deterministic with fixed `random_state`. Same input → same output.
+- **Scalable**: Block-vectorized matching, O(block × N_controls) memory per iteration.
+- **Validated**: 44 tests, R-validated across 15 synthetic configurations.
+- **Modular**: Each step (reduce → score → match → balance) is independently usable.
+
+## References
+
+- Witman, A., Acquah, J., Alvelais, A., et al. (2018). "Comparison Group Selection in the Presence of Rolling Entry." *Health Services Research*, 54(1), 262–270. doi:10.1111/1475-6773.13086
+- RTI International. `rollmatch` R package. https://github.com/RTIInternational/rollmatch
+- Hartman, E., & Hidalgo, F. D. (2018). "An Equivalence Approach to Balance and Placebo Tests." *American Journal of Political Science*, 62(4), 1000–1013. doi:10.1111/ajps.12387
+
+## Status & Contributing
+
+This package is under **active development**. We welcome:
+
+- **Bug reports** — if you encounter unexpected behavior, please open an issue with a minimal reproducible example
+- **Feature requests** — suggestions for new matching methods, diagnostics, or API improvements
+- **Contributions** — pull requests are welcome; please open an issue first to discuss
+
+Please be cautious when using this package for published research. While we have validated against the R rollmatch package across multiple configurations (see [Validation](#validation-against-r-rollmatch)), this is alpha software. We strongly recommend:
+
+1. **Cross-checking** results against an established implementation (R rollmatch, R MatchIt) for critical analyses
+2. **Inspecting balance diagnostics** carefully before proceeding to estimation
+3. **Reporting any discrepancies** you find via [GitHub Issues](https://github.com/AlanHuang99/pyrollmatch/issues)
+
+## License
+
+MIT