pypsbuilder 2.5.2__tar.gz → 2.6.0__tar.gz

pypsbuilder-2.6.0/.github/dependabot.yml

@@ -0,0 +1,6 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"

pypsbuilder-2.6.0/.github/workflows/release.yml

@@ -0,0 +1,32 @@
+name: PyPi Publisher
+
+on:
+  release:
+    types: [published]
+
+jobs:
+  pypi-publisher:
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pypsbuilder
+
+    permissions:
+      id-token: write # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install build
+      - name: Build package
+        run: python -m build
+      - name: Publish distribution 📦 to PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1

pypsbuilder-2.6.0/.github/workflows/testing.yml

@@ -0,0 +1,43 @@
+name: Python testing
+
+on:
+  push:
+    branches:
+      - "**"
+  pull_request:
+
+jobs:
+  build:
+    name: Testing on ${{matrix.os}}
+    runs-on: ${{matrix.os}}
+    strategy:
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12"]
+
+    steps:
+      - name: Checkout repository
+        uses: actions/checkout@v4
+        with:
+          # setuptools_scm requires a non-shallow clone of the repository
+          fetch-depth: 0
+
+      - name: Set up Python ${{ matrix.python-version }}
+        uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+
+      - name: Install Python package
+        run: |
+          python -m pip install .[tests]
+
+      - name: Run Python tests
+        run: |
+          python -m pytest --cov --cov-report=xml
+
+      - name: Upload coverage to Codecov
+        uses: codecov/codecov-action@v5
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          fail_ci_if_error: true
+          files: ./coverage.xml

pypsbuilder-2.6.0/.github/workflows/testrelease.yml

@@ -0,0 +1,33 @@
+name: TestPyPi Publisher
+
+on:
+  workflow_dispatch:
+
+jobs:
+  pypi-publisher:
+    runs-on: ubuntu-latest
+    environment:
+      name: testpypi
+      url: https://test.pypi.org/p/pypsbuilder
+
+    permissions:
+      id-token: write # IMPORTANT: mandatory for trusted publishing
+
+    steps:
+      - uses: actions/checkout@v4
+        with:
+          persist-credentials: false
+      - name: Set up Python
+        uses: actions/setup-python@v5
+        with:
+          python-version: "3.x"
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip
+          pip install build
+      - name: Build package
+        run: python -m build
+      - name: Publish distribution 📦 to TestPyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          repository-url: https://test.pypi.org/legacy/

pypsbuilder-2.6.0/.gitignore

@@ -0,0 +1,66 @@
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+env/
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+*.egg-info/
+.installed.cfg
+*.egg
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*,cover
+.hypothesis/
+
+# Translations
+*.mo
+*.pot
+
+# Django stuff:
+*.log
+
+# Jupyter
+.ipynb_checkpoints
+*/.ipynb_checkpoints/*
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+target/
+
+# venv
+.venv/

pypsbuilder-2.6.0/.pre-commit-config.yaml

@@ -0,0 +1,28 @@
+default_stages: [commit, push]
+repos:
+  - repo: https://github.com/psf/black
+    rev: 24.8.0
+    hooks:
+    - id: black
+      args: [--line-length=88]
+      exclude: ^(venv/|docs/)
+      types: ['python']
+  - repo: https://github.com/PyCQA/flake8
+    rev: 7.1.1
+    hooks:
+    - id: flake8
+      args:
+        - --max-line-length=88
+        - --ignore=F401,E501,W503,E731,E743,E741,E203
+      exclude: ^(venv/|docs/)
+      types: ['python']
+  - repo: local
+    hooks:
+    - id: pytest
+      name: pytest
+      entry: ./.venv/bin/pytest
+      language: system
+      types: [python]
+      pass_filenames: false
+      always_run: true
+

pypsbuilder-2.6.0/.readthedocs.yaml

@@ -0,0 +1,24 @@
+#.readthedocs.yaml
+# Read the Docs configuration file
+# See https://docs.readthedocs.io/en/stable/config-file/v2.html for details
+
+# Required
+version: 2
+
+# Build documentation in the docs/ directory with Sphinx
+sphinx:
+  configuration: docs/conf.py
+
+# Optionally build your docs in additional formats such as PDF and ePub
+formats: all
+
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.11"
+
+# Optionally set the version of Python and requirements required to build your docs
+python:
+  install:
+    - method: pip
+      path: .[docs]

{pypsbuilder-2.5.2 → pypsbuilder-2.6.0}/CHANGELOG.md

@@ -1,8 +1,11 @@
 # Changelog
 All notable pypsbuilder changes.
 
-## [2.5.0] - 2024-12-13
-Fully refactored tp pyproject.toml
+## [2.6.0] - 2025-01-23
+Initial PyQt6 release
+
+## [2.5.3] - 2024-12-18
+Latest version using PyQt5
 
 ## [2.5.0] - 2024-12-13
 ### Fixed

pypsbuilder-2.6.0/PKG-INFO

@@ -0,0 +1,159 @@
+Metadata-Version: 2.4
+Name: pypsbuilder
+Version: 2.6.0
+Summary: THERMOCALC front-end for constructing and analyzing PT pseudosections
+Project-URL: Homepage, https://github.com/ondrolexa/pypsbuilder
+Project-URL: Documentation, https://pypsbuilder.readthedocs.io
+Project-URL: Repository, https://github.com/ondrolexa/pypsbuilder.git
+Project-URL: Issues, https://github.com/ondrolexa/pypsbuilder/issues
+Project-URL: Changelog, https://github.com/ondrolexa/pypsbuilder/blob/master/CHANGELOG.md
+Author-email: Ondrej Lexa <lexa.ondrej@gmail.com>
+Maintainer-email: Ondrej Lexa <lexa.ondrej@gmail.com>
+License: MIT License
+        
+        Simplistic THERMOCALC front-end for constructing PT pseudosections.
+        Copyright (c) 2015, Ondrej Lexa
+        
+        Permission is hereby granted, free of charge, to any person obtaining a copy
+        of this software and associated documentation files (the "Software"), to deal
+        in the Software without restriction, including without limitation the rights
+        to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+        copies of the Software, and to permit persons to whom the Software is
+        furnished to do so, subject to the following conditions:
+        
+        The above copyright notice and this permission notice shall be included in all
+        copies or substantial portions of the Software.
+        
+        THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+        IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+        FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+        AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+        LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+        OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+        SOFTWARE.
+License-File: AUTHORS.md
+License-File: LICENSE
+Keywords: THERMOCALC,petrology
+Classifier: Development Status :: 4 - Beta
+Classifier: Intended Audience :: Science/Research
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.10
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Utilities
+Requires-Python: >=3.10
+Requires-Dist: matplotlib>=3.8
+Requires-Dist: networkx
+Requires-Dist: numpy
+Requires-Dist: pyqt6
+Requires-Dist: scikit-image
+Requires-Dist: scipy
+Requires-Dist: shapely>=2
+Requires-Dist: tqdm
+Provides-Extra: dev
+Requires-Dist: black; extra == 'dev'
+Requires-Dist: jupyterlab; extra == 'dev'
+Requires-Dist: pytest; extra == 'dev'
+Requires-Dist: pytest-cov; extra == 'dev'
+Requires-Dist: sphinx; extra == 'dev'
+Requires-Dist: sphinx-mdinclude; extra == 'dev'
+Requires-Dist: sphinx-rtd-theme; extra == 'dev'
+Provides-Extra: docs
+Requires-Dist: sphinx; extra == 'docs'
+Requires-Dist: sphinx-mdinclude; extra == 'docs'
+Requires-Dist: sphinx-rtd-theme; extra == 'docs'
+Provides-Extra: extra
+Requires-Dist: jupyterlab; extra == 'extra'
+Provides-Extra: tests
+Requires-Dist: pytest; extra == 'tests'
+Requires-Dist: pytest-cov; extra == 'tests'
+Description-Content-Type: text/markdown
+
+# pypsbuilder
+
+[![PyPI - Version](https://img.shields.io/pypi/v/pypsbuilder)](https://pypi.org/project/pypsbuilder/)
+[![Testing](https://github.com/ondrolexa/pypsbuilder/actions/workflows/testing.yml/badge.svg?event=push)](https://github.com/ondrolexa/pypsbuilder)
+[![Documentation Status](https://readthedocs.org/projects/polylx/badge/?version=stable)](https://pypsbuilder.readthedocs.io/en/latest/?badge=latest)
+
+Not that simplistic THERMOCALC front-end for constructing and visualizations of P-T, T-X and P-X pseudosections
+
+## How to install
+
+It is strongly suggested to install **pypsbuilder** into separate environment. You can create
+Python virtual environment. For Linux and macOS use:
+
+    python -m venv pyps
+    source pyps/bin/activate
+
+for Windows use PowerShell:
+
+    py -m venv pyps
+    pyps\Scripts\activate
+
+> [!NOTE]
+> On Microsoft Windows, it may be required to enable the activate script by setting the execution policy for the user.
+> You can do this by issuing the following PowerShell command:
+> ```
+> PS C:\> Set-ExecutionPolicy -ExecutionPolicy RemoteSigned -Scope CurrentUser
+> ```
+
+and install **pypsbuilder** using pip within the environment:
+
+    pip install pypsbuilder
+
+Jupyter Lab could be also installed providing extra option:
+
+    pip install pypsbuilder[extra]
+
+## I'm using conda or mamba to manage environments
+
+If you have already have conda or mamba installed, you can create environment with:
+
+    conda create -n pyps numpy matplotlib scipy networkx shapely pyqt tqdm jupyterlab
+
+or
+
+    mamba create -n pyps numpy matplotlib scipy networkx shapely pyqt tqdm jupyterlab
+
+Then activate the new environment:
+
+    conda activate pyps
+
+or
+
+    mamba activate pyps
+
+and install with pip. Note that PyQt6 is not yet available in conda repositories,
+so we need to use the 2.5.3 version:
+
+    pip install pypsbuilder==2.5.3
+
+#### Note for macOS
+
+If you have environment created with conda/mamba install the pypsbuilder with:
+
+    pip install pypsbuilder==2.5.3 --no-deps
+
+#### Install master version
+
+You can install latest version from master branch on GitHub:
+
+    pip install https://github.com/ondrolexa/pypsbuilder/archive/master.zip
+
+#### Upgrade existing installation
+
+To upgrade an already installed **pypsbuilder** to the latest release:
+
+    pip install --upgrade pypsbuilder
+
+or to latest master version:
+
+    pip install --upgrade https://github.com/ondrolexa/pypsbuilder/archive/master.zip
+
+## Documentation and tutorials
+
+Check documentation and tutorials on RTD [https://pypsbuilder.readthedocs.io/en/latest/](https://pypsbuilder.readthedocs.io/en/latest/)
+
+## License
+
+pypsbuilder is free software: you can redistribute it and/or modify it under the terms of the MIT License. A copy of this license is provided in ``LICENSE`` file.

pypsbuilder-2.6.0/README.md

@@ -0,0 +1,88 @@
+# pypsbuilder
+
+[![PyPI - Version](https://img.shields.io/pypi/v/pypsbuilder)](https://pypi.org/project/pypsbuilder/)
+[![Testing](https://github.com/ondrolexa/pypsbuilder/actions/workflows/testing.yml/badge.svg?event=push)](https://github.com/ondrolexa/pypsbuilder)
+[![Documentation Status](https://readthedocs.org/projects/polylx/badge/?version=stable)](https://pypsbuilder.readthedocs.io/en/latest/?badge=latest)
+
+Not that simplistic THERMOCALC front-end for constructing and visualizations of P-T, T-X and P-X pseudosections
+
+## How to install
+
+It is strongly suggested to install **pypsbuilder** into separate environment. You can create
+Python virtual environment. For Linux and macOS use:
+
+    python -m venv pyps
+    source pyps/bin/activate
+
+for Windows use PowerShell:
+
+    py -m venv pyps
+    pyps\Scripts\activate
+
+> [!NOTE]
+> On Microsoft Windows, it may be required to enable the activate script by setting the execution policy for the user.
+> You can do this by issuing the following PowerShell command:
+> ```
+> PS C:\> Set-ExecutionPolicy -ExecutionPolicy RemoteSigned -Scope CurrentUser
+> ```
+
+and install **pypsbuilder** using pip within the environment:
+
+    pip install pypsbuilder
+
+Jupyter Lab could be also installed providing extra option:
+
+    pip install pypsbuilder[extra]
+
+## I'm using conda or mamba to manage environments
+
+If you have already have conda or mamba installed, you can create environment with:
+
+    conda create -n pyps numpy matplotlib scipy networkx shapely pyqt tqdm jupyterlab
+
+or
+
+    mamba create -n pyps numpy matplotlib scipy networkx shapely pyqt tqdm jupyterlab
+
+Then activate the new environment:
+
+    conda activate pyps
+
+or
+
+    mamba activate pyps
+
+and install with pip. Note that PyQt6 is not yet available in conda repositories,
+so we need to use the 2.5.3 version:
+
+    pip install pypsbuilder==2.5.3
+
+#### Note for macOS
+
+If you have environment created with conda/mamba install the pypsbuilder with:
+
+    pip install pypsbuilder==2.5.3 --no-deps
+
+#### Install master version
+
+You can install latest version from master branch on GitHub:
+
+    pip install https://github.com/ondrolexa/pypsbuilder/archive/master.zip
+
+#### Upgrade existing installation
+
+To upgrade an already installed **pypsbuilder** to the latest release:
+
+    pip install --upgrade pypsbuilder
+
+or to latest master version:
+
+    pip install --upgrade https://github.com/ondrolexa/pypsbuilder/archive/master.zip
+
+## Documentation and tutorials
+
+Check documentation and tutorials on RTD [https://pypsbuilder.readthedocs.io/en/latest/](https://pypsbuilder.readthedocs.io/en/latest/)
+
+## License
+
+pypsbuilder is free software: you can redistribute it and/or modify it under the terms of the MIT License. A copy of this license is provided in ``LICENSE`` file.

pypsbuilder-2.6.0/codecov.yml

@@ -0,0 +1,10 @@
+codecov:
+  require_ci_to_pass: yes
+
+coverage:
+  precision: 2
+  round: down
+  range: "70...100"
+
+ignore:
+  - "**/tests"

pypsbuilder-2.6.0/docs/_static/theme_overrides.css

@@ -0,0 +1,13 @@
+/* override table width restrictions */
+@media screen and (min-width: 767px) {
+
+   .wy-table-responsive table td {
+      /* !important prevents the common CSS stylesheets from overriding
+         this as on RTD they are loaded after this stylesheet */
+      white-space: normal !important;
+   }
+
+   .wy-table-responsive {
+      overflow: visible !important;
+   }
+}

pypsbuilder-2.6.0/docs/api/pypsbuilder.psclasses.Dogmin.rst

@@ -0,0 +1,31 @@
+pypsbuilder.psclasses.Dogmin
+============================
+
+.. currentmodule:: pypsbuilder.psclasses
+
+.. autoclass:: Dogmin
+
+   
+   .. automethod:: __init__
+
+   
+   .. rubric:: Methods
+
+   .. autosummary::
+   
+      ~Dogmin.__init__
+      ~Dogmin.annotation
+      ~Dogmin.label
+      ~Dogmin.ptguess
+   
+   
+
+   
+   
+   .. rubric:: Attributes
+
+   .. autosummary::
+   
+      ~Dogmin.out
+   
+   

pypsbuilder-2.6.0/docs/api/pypsbuilder.psclasses.InvPoint.rst

@@ -0,0 +1,34 @@
+pypsbuilder.psclasses.InvPoint
+==============================
+
+.. currentmodule:: pypsbuilder.psclasses
+
+.. autoclass:: InvPoint
+
+   
+   .. automethod:: __init__
+
+   
+   .. rubric:: Methods
+
+   .. autosummary::
+   
+      ~InvPoint.__init__
+      ~InvPoint.all_unilines
+      ~InvPoint.annotation
+      ~InvPoint.datakeys
+      ~InvPoint.label
+      ~InvPoint.ptguess
+      ~InvPoint.shape
+   
+   
+
+   
+   
+   .. rubric:: Attributes
+
+   .. autosummary::
+   
+      ~InvPoint.midix
+   
+   

pypsbuilder-2.6.0/docs/api/pypsbuilder.psclasses.PTsection.rst

@@ -0,0 +1,41 @@
+pypsbuilder.psclasses.PTsection
+===============================
+
+.. currentmodule:: pypsbuilder.psclasses
+
+.. autoclass:: PTsection
+
+   
+   .. automethod:: __init__
+
+   
+   .. rubric:: Methods
+
+   .. autosummary::
+   
+      ~PTsection.__init__
+      ~PTsection.add_dogmin
+      ~PTsection.add_inv
+      ~PTsection.add_uni
+      ~PTsection.cleanup_data
+      ~PTsection.create_shapes
+      ~PTsection.from_file
+      ~PTsection.getidinv
+      ~PTsection.getiduni
+      ~PTsection.read_file
+      ~PTsection.show
+      ~PTsection.trim_uni
+   
+   
+
+   
+   
+   .. rubric:: Attributes
+
+   .. autosummary::
+   
+      ~PTsection.range_shapes
+      ~PTsection.ratio
+      ~PTsection.type
+   
+   

pypsbuilder-2.6.0/docs/api/pypsbuilder.psclasses.PXsection.rst

@@ -0,0 +1,41 @@
+pypsbuilder.psclasses.PXsection
+===============================
+
+.. currentmodule:: pypsbuilder.psclasses
+
+.. autoclass:: PXsection
+
+   
+   .. automethod:: __init__
+
+   
+   .. rubric:: Methods
+
+   .. autosummary::
+   
+      ~PXsection.__init__
+      ~PXsection.add_dogmin
+      ~PXsection.add_inv
+      ~PXsection.add_uni
+      ~PXsection.cleanup_data
+      ~PXsection.create_shapes
+      ~PXsection.from_file
+      ~PXsection.getidinv
+      ~PXsection.getiduni
+      ~PXsection.read_file
+      ~PXsection.show
+      ~PXsection.trim_uni
+   
+   
+
+   
+   
+   .. rubric:: Attributes
+
+   .. autosummary::
+   
+      ~PXsection.range_shapes
+      ~PXsection.ratio
+      ~PXsection.type
+   
+