pyplotutil 2.0.0__tar.gz

pyplotutil-2.0.0/.claude/settings.json

@@ -0,0 +1,17 @@
+{
+  "hooks": {
+    "PostToolUse": [
+      {
+        "matcher": "Write|Edit",
+        "hooks": [
+          {
+            "type": "command",
+            "command": "jq -r '.tool_input.file_path // .tool_response.filePath // empty' | { read -r f; case \"$f\" in *.py) uv run --no-sync --project \"${CLAUDE_PROJECT_DIR:-.}\" ruff format \"$f\" 2>/dev/null || true;; esac; }",
+            "timeout": 30,
+            "statusMessage": "Formatting with ruff..."
+          }
+        ]
+      }
+    ]
+  }
+}

pyplotutil-2.0.0/.claude/skills/check/SKILL.md

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+---
+name: check
+description: Run the full quality gate for pyplotutil — ruff lint, mypy type check, and the pytest suite. Use before committing or when the user asks to verify the codebase is green.
+---
+
+Run each step with Bash and report results. Continue through all steps even if an earlier one fails, so the user gets the complete picture in one pass.
+
+1. **Lint**: `uv run ruff check`
+2. **Format check**: `uv run ruff format --check`
+3. **Type check**: `uv run mypy`
+4. **Tests**: `uv run pytest`
+
+Then summarize: one line per step (pass/fail), followed by details for any failures.
+
+- If ruff reports fixable issues, offer to run `uv run ruff check --fix` (note: `SIM105` is configured unfixable).
+- mypy failures are expected to be fixed, not ignored — CI enforces type checking via `nox -s typecheck`.
+- The test suite uses pytest-randomly; if a failure looks order-dependent, rerun with the printed seed (`-p randomly --randomly-seed=<seed>`) to reproduce.

pyplotutil-2.0.0/.github/dependabot.yml

@@ -0,0 +1,19 @@
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/"
+    schedule:
+      interval: "monthly"
+    groups:
+      actions:
+        patterns:
+          - "*"
+
+  - package-ecosystem: "uv"
+    directory: "/"
+    schedule:
+      interval: "monthly"
+
+# Local Variables:
+# jinx-local-words: "dependabot github uv"
+# End:

pyplotutil-2.0.0/.github/workflows/ci.yml

@@ -0,0 +1,80 @@
+name: ci
+
+on:
+  push:
+    branches: [main, develop, "ci/**"]
+    paths-ignore:
+      - "README.md"
+    tags:
+      - "*"
+  pull_request:
+    branches: [main, develop]
+  workflow_dispatch:
+
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+defaults:
+  run:
+    shell: bash
+
+env:
+  LANG: en_US.utf-8
+  LC_ALL: en_US.utf-8
+  PYTHONIOENCODING: UTF-8
+  FORCE_COLOR: 3
+
+jobs:
+  checks:
+    name: checks
+    runs-on: ubuntu-latest
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v7
+        with:
+          fetch-depth: 0
+
+      - name: Setup uv
+        uses: astral-sh/setup-uv@v8.3.2
+        with:
+          enable-cache: true
+
+      - name: Run lint and type check
+        run: uvx --from 'nox[uv]' nox --non-interactive --error-on-missing-interpreters --session lint typecheck
+
+  tests:
+    timeout-minutes: 10
+    strategy:
+      max-parallel: 4
+      matrix:
+        os:
+          - ubuntu-22.04
+          - ubuntu-24.04
+        # - macos-latest
+        # - windows-latest
+        python-version:
+          - "3.11"
+          - "3.12"
+          - "3.13"
+          - "3.14"
+    runs-on: ${{ matrix.os }}
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v7
+        with:
+          fetch-depth: 0
+
+      - name: Setup uv
+        uses: astral-sh/setup-uv@v8.3.2
+        with:
+          enable-cache: true
+
+      - name: Run tests on ${{ matrix.os }}
+        run: uvx --from 'nox[uv]' nox --non-interactive --error-on-missing-interpreters --session "tests-${{ matrix.python-version }}" -- --full-trace --cov
+
+# Local Variables:
+# jinx-local-words: "ci github macos md nox os typecheck ubuntu uv uvx"
+# End:

pyplotutil-2.0.0/.github/workflows/release.yml

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+name: release
+
+on:
+  push:
+    tags:
+      - "v*"
+
+jobs:
+  pypi:
+    name: Publish to PyPI
+    runs-on: ubuntu-latest
+    environment:
+      name: pypi
+      url: https://pypi.org/project/pyplotutil/
+    permissions:
+      id-token: write
+
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v7
+        with:
+          fetch-depth: 0
+
+      - name: Setup uv
+        uses: astral-sh/setup-uv@v8.3.2
+
+      - name: Build distributions
+        run: uv build
+
+      - name: Publish to PyPI
+        run: uv publish
+
+# Local Variables:
+# jinx-local-words: "pypi ubuntu uv"
+# End:

pyplotutil-2.0.0/.gitignore

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+/example.log
+
+### Python ###
+# Byte-compiled / optimized / DLL files
+__pycache__/
+*.py[cod]
+*$py.class
+
+# C extensions
+*.so
+
+# Distribution / packaging
+.Python
+build/
+develop-eggs/
+dist/
+downloads/
+eggs/
+.eggs/
+lib/
+lib64/
+parts/
+sdist/
+var/
+wheels/
+share/python-wheels/
+*.egg-info/
+.installed.cfg
+*.egg
+MANIFEST
+
+# PyInstaller
+#  Usually these files are written by a python script from a template
+#  before PyInstaller builds the exe, so as to inject date/other infos into it.
+*.manifest
+*.spec
+
+# Installer logs
+pip-log.txt
+pip-delete-this-directory.txt
+
+# Unit test / coverage reports
+htmlcov/
+.tox/
+.nox/
+.coverage
+.coverage.*
+.cache
+nosetests.xml
+coverage.xml
+*.cover
+*.py,cover
+.hypothesis/
+.pytest_cache/
+cover/
+
+# Sphinx documentation
+docs/_build/
+
+# PyBuilder
+.pybuilder/
+target/
+
+# Jupyter Notebook
+.ipynb_checkpoints
+
+# IPython
+profile_default/
+ipython_config.py
+
+# pyenv
+#   For a library or package, you might want to ignore these files since the code is
+#   intended to run in multiple environments; otherwise, check them in:
+# .python-version
+
+# pipenv
+#   According to pypa/pipenv#598, it is recommended to include Pipfile.lock in version control.
+#   However, in case of collaboration, if having platform-specific dependencies or dependencies
+#   having no cross-platform support, pipenv may install dependencies that don't work, or not
+#   install all needed dependencies.
+#Pipfile.lock
+
+# poetry
+#   Similar to Pipfile.lock, it is generally recommended to include poetry.lock in version control.
+#   This is especially recommended for binary packages to ensure reproducibility, and is more
+#   commonly ignored for libraries.
+#   https://python-poetry.org/docs/basic-usage/#commit-your-poetrylock-file-to-version-control
+#poetry.lock
+
+# PEP 582; used by e.g. github.com/David-OConnor/pyflow
+__pypackages__/
+
+# pdm
+.pdm.toml
+
+# Environments
+.env
+.venv
+env/
+venv/
+ENV/
+env.bak/
+venv.bak/
+
+# mypy
+.mypy_cache/
+.dmypy.json
+dmypy.json
+
+# Pyre type checker
+.pyre/
+
+# pytype static type analyzer
+.pytype/
+
+# Cython debug symbols
+cython_debug/
+
+# Claude Code personal settings
+.claude/settings.local.json

pyplotutil-2.0.0/.python-version

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+3.11.15

pyplotutil-2.0.0/CLAUDE.md

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+# CLAUDE.md
+
+This file provides guidance to Claude Code (claude.ai/code) when working with code in this repository.
+
+## Commands
+
+- Package manager is **uv**; run tools through it: `uv run pytest`, `uv run mypy src tests`, `uv run ruff check`.
+- `nox` runs the default sessions (lint, typecheck, tests across Python 3.11–3.14). Prefer `uv run pytest` for quick iteration.
+- Run a single test: `uv run pytest -k 'test_name'`.
+- Run `uv run mypy` before finishing a change (targets `src`, `tests`, and `examples` via config); CI enforces it through `nox -s typecheck`.
+
+## Code style
+
+- ruff has `select = ["ALL"]` (every rule enabled), line length 120, numpy docstring convention.
+- Every module must start with `from __future__ import annotations` (ruff isort `required-imports`).
+- Format with `ruff format` (Black-compatible, double quotes).
+
+## Gotchas
+
+- numpy requires `>=2.2.0`. A historical `<2.2.0` pin was confirmed obsolete in July 2026 (full matrix green on numpy 2.2.6/2.5.1) — don't reintroduce it without a reproducible failure.
+- Data handling is built on **polars**, not pandas.
+- The package version comes from git tags via hatch-vcs — do not add a static `version` to pyproject.toml.
+- pytest-randomly randomizes test order, so tests must not depend on execution order.
+
+## Commits
+
+- Conventional Commits with a capitalized, imperative subject: `feat: Add ...`, `fix: Handle ...`, `chore: Re-lock ...`.

pyplotutil-2.0.0/LICENSE

@@ -0,0 +1,21 @@
+MIT License
+
+Copyright (c) 2021 Hiroshi Atsuta
+
+Permission is hereby granted, free of charge, to any person obtaining a copy
+of this software and associated documentation files (the "Software"), to deal
+in the Software without restriction, including without limitation the rights
+to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
+copies of the Software, and to permit persons to whom the Software is
+furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all
+copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
+IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
+FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
+AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
+LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
+OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
+SOFTWARE.

pyplotutil-2.0.0/PKG-INFO

@@ -0,0 +1,123 @@
+Metadata-Version: 2.4
+Name: pyplotutil
+Version: 2.0.0
+Summary: Python utilities for academic plotting
+Project-URL: Homepage, https://github.com/hrshtst/pyplotutil
+Author-email: Hiroshi Atsuta <atsuta@ieee.org>
+Maintainer-email: Hiroshi Atsuta <atsuta@ieee.org>
+License: MIT
+License-File: LICENSE
+Keywords: matplotlib-figures,matplotlib-style-sheets,matplotlib-styles,python,scientific-papers
+Classifier: Development Status :: 3 - Alpha
+Classifier: Framework :: Matplotlib
+Classifier: Framework :: Pytest
+Classifier: Intended Audience :: Science/Research
+Classifier: License :: OSI Approved :: MIT License
+Classifier: Programming Language :: Python
+Classifier: Programming Language :: Python :: 3
+Classifier: Programming Language :: Python :: 3 :: Only
+Classifier: Programming Language :: Python :: 3.11
+Classifier: Programming Language :: Python :: 3.12
+Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
+Classifier: Topic :: Scientific/Engineering
+Classifier: Topic :: Scientific/Engineering :: Visualization
+Classifier: Topic :: Utilities
+Classifier: Typing :: Typed
+Requires-Python: >=3.11
+Requires-Dist: matplotlib>=3.10.0
+Requires-Dist: numpy>=2.2.0
+Requires-Dist: polars>=1.17.1
+Requires-Dist: scienceplots>=2.1.1
+Provides-Extra: gui
+Requires-Dist: pyqt6>=6.8.0; extra == 'gui'
+Description-Content-Type: text/markdown
+
+# pyplotutil: plotting utility for academic publications
+
+**pyplotutil** is a wrapper library of
+[polars](https://pola.rs/) and
+[matplotlib](https://matplotlib.org/), which allows you to handle time
+series data easily and create graphs tolerable to scientific
+publications.
+
+## Features
+
+- Load tabular data from CSV files, buffers, or polars frames with
+  column-attribute access (`data.time`, `data.voltage`)
+- Group rows by a tag column (`TaggedData`) or manage whole
+  directories of data files (`Dataset`)
+- Plot multiple time series and mean-with-error graphs (standard
+  deviation, standard error, variance, range)
+- Apply publication-ready matplotlib styles
+  ([SciencePlots](https://github.com/garrettj403/SciencePlots)):
+  `science`, `ieee`, `nature`, `notebook`
+- Save figures to multiple formats in one call with sanitized
+  filenames
+- Event logging helpers with file and console output
+
+## Installation
+
+Requires Python 3.11+.
+
+```console
+pip install git+https://github.com/hrshtst/pyplotutil.git
+```
+
+Interactive plotting with `plt.show()` needs a GUI backend, which is
+provided by the optional `gui` extra:
+
+```console
+pip install "pyplotutil[gui] @ git+https://github.com/hrshtst/pyplotutil.git"
+```
+
+## Quickstart
+
+```python
+import matplotlib.pyplot as plt
+
+from pyplotutil import Data, Dataset, apply_style, plot_mean_err, save_figure
+
+# Publication-ready style.
+apply_style("science", no_latex=True)
+
+# Load a single CSV file; columns are accessible as attributes.
+data = Data("experiment.csv")
+fig, ax = plt.subplots()
+ax.plot(data.t, data.position)
+
+# Load every CSV file in a directory and plot mean with standard error.
+dataset = Dataset("results/")
+t, y = dataset.get_timeseries("position")
+plot_mean_err(ax, t, y, "se", tlim=None, lw=1, capsize=2, label="mean")
+
+# Write figure.png and figure.pdf in one call.
+save_figure(fig, "output", "figure", ["png", "pdf"])
+```
+
+Group rows by a tag column:
+
+```python
+from pyplotutil import TaggedData
+
+tagged = TaggedData("trials.csv", tag_column="trial")
+for tag, data in tagged:
+    print(tag, data.param("gain"))
+```
+
+## Development
+
+This project uses [uv](https://docs.astral.sh/uv/) and
+[nox](https://nox.thea.codes/):
+
+```console
+uv sync                 # set up the development environment
+uv run pytest           # run the test suite
+uv run mypy             # type check
+uv run ruff check       # lint
+nox                     # lint + type check + tests on Python 3.11-3.14
+```
+
+## License
+
+[MIT](LICENSE)

pyplotutil-2.0.0/README.md

@@ -0,0 +1,88 @@
+# pyplotutil: plotting utility for academic publications
+
+**pyplotutil** is a wrapper library of
+[polars](https://pola.rs/) and
+[matplotlib](https://matplotlib.org/), which allows you to handle time
+series data easily and create graphs tolerable to scientific
+publications.
+
+## Features
+
+- Load tabular data from CSV files, buffers, or polars frames with
+  column-attribute access (`data.time`, `data.voltage`)
+- Group rows by a tag column (`TaggedData`) or manage whole
+  directories of data files (`Dataset`)
+- Plot multiple time series and mean-with-error graphs (standard
+  deviation, standard error, variance, range)
+- Apply publication-ready matplotlib styles
+  ([SciencePlots](https://github.com/garrettj403/SciencePlots)):
+  `science`, `ieee`, `nature`, `notebook`
+- Save figures to multiple formats in one call with sanitized
+  filenames
+- Event logging helpers with file and console output
+
+## Installation
+
+Requires Python 3.11+.
+
+```console
+pip install git+https://github.com/hrshtst/pyplotutil.git
+```
+
+Interactive plotting with `plt.show()` needs a GUI backend, which is
+provided by the optional `gui` extra:
+
+```console
+pip install "pyplotutil[gui] @ git+https://github.com/hrshtst/pyplotutil.git"
+```
+
+## Quickstart
+
+```python
+import matplotlib.pyplot as plt
+
+from pyplotutil import Data, Dataset, apply_style, plot_mean_err, save_figure
+
+# Publication-ready style.
+apply_style("science", no_latex=True)
+
+# Load a single CSV file; columns are accessible as attributes.
+data = Data("experiment.csv")
+fig, ax = plt.subplots()
+ax.plot(data.t, data.position)
+
+# Load every CSV file in a directory and plot mean with standard error.
+dataset = Dataset("results/")
+t, y = dataset.get_timeseries("position")
+plot_mean_err(ax, t, y, "se", tlim=None, lw=1, capsize=2, label="mean")
+
+# Write figure.png and figure.pdf in one call.
+save_figure(fig, "output", "figure", ["png", "pdf"])
+```
+
+Group rows by a tag column:
+
+```python
+from pyplotutil import TaggedData
+
+tagged = TaggedData("trials.csv", tag_column="trial")
+for tag, data in tagged:
+    print(tag, data.param("gain"))
+```
+
+## Development
+
+This project uses [uv](https://docs.astral.sh/uv/) and
+[nox](https://nox.thea.codes/):
+
+```console
+uv sync                 # set up the development environment
+uv run pytest           # run the test suite
+uv run mypy             # type check
+uv run ruff check       # lint
+nox                     # lint + type check + tests on Python 3.11-3.14
+```
+
+## License
+
+[MIT](LICENSE)

pyplotutil-2.0.0/examples/__init__.py

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+"""Example scripts."""
+
+from __future__ import annotations