pyphyschemtools 0.2.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (189) hide show
  1. pyphyschemtools-0.2.1/CHANGELOG.md +12 -0
  2. pyphyschemtools-0.2.1/LICENSE +674 -0
  3. pyphyschemtools-0.2.1/MANIFEST.in +30 -0
  4. pyphyschemtools-0.2.1/PKG-INFO +37 -0
  5. pyphyschemtools-0.2.1/README.md +8 -0
  6. pyphyschemtools-0.2.1/docs/Makefile +20 -0
  7. pyphyschemtools-0.2.1/docs/build/doctrees/environment.pickle +0 -0
  8. pyphyschemtools-0.2.1/docs/build/doctrees/index.doctree +0 -0
  9. pyphyschemtools-0.2.1/docs/build/doctrees/modules.doctree +0 -0
  10. pyphyschemtools-0.2.1/docs/build/doctrees/pyphyschemtools.doctree +0 -0
  11. pyphyschemtools-0.2.1/docs/build/doctrees/pyphyschemtools.icons_logos_banner.doctree +0 -0
  12. pyphyschemtools-0.2.1/docs/build/html/.buildinfo +4 -0
  13. pyphyschemtools-0.2.1/docs/build/html/.nojekyll +0 -0
  14. pyphyschemtools-0.2.1/docs/build/html/CNAME +1 -0
  15. pyphyschemtools-0.2.1/docs/build/html/_images/tools4pyPC_banner.svg +193 -0
  16. pyphyschemtools-0.2.1/docs/build/html/_sources/index.rst.txt +22 -0
  17. pyphyschemtools-0.2.1/docs/build/html/_sources/modules.rst.txt +7 -0
  18. pyphyschemtools-0.2.1/docs/build/html/_sources/pyphyschemtools.icons_logos_banner.rst.txt +7 -0
  19. pyphyschemtools-0.2.1/docs/build/html/_sources/pyphyschemtools.rst.txt +122 -0
  20. pyphyschemtools-0.2.1/docs/build/html/_static/_sphinx_javascript_frameworks_compat.js +123 -0
  21. pyphyschemtools-0.2.1/docs/build/html/_static/base-stemmer.js +476 -0
  22. pyphyschemtools-0.2.1/docs/build/html/_static/basic.css +906 -0
  23. pyphyschemtools-0.2.1/docs/build/html/_static/css/badge_only.css +1 -0
  24. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/Roboto-Slab-Bold.woff +0 -0
  25. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/Roboto-Slab-Bold.woff2 +0 -0
  26. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/Roboto-Slab-Regular.woff +0 -0
  27. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/Roboto-Slab-Regular.woff2 +0 -0
  28. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/fontawesome-webfont.eot +0 -0
  29. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/fontawesome-webfont.svg +2671 -0
  30. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/fontawesome-webfont.ttf +0 -0
  31. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/fontawesome-webfont.woff +0 -0
  32. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/fontawesome-webfont.woff2 +0 -0
  33. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-bold-italic.woff +0 -0
  34. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-bold-italic.woff2 +0 -0
  35. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-bold.woff +0 -0
  36. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-bold.woff2 +0 -0
  37. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-normal-italic.woff +0 -0
  38. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-normal-italic.woff2 +0 -0
  39. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-normal.woff +0 -0
  40. pyphyschemtools-0.2.1/docs/build/html/_static/css/fonts/lato-normal.woff2 +0 -0
  41. pyphyschemtools-0.2.1/docs/build/html/_static/css/theme.css +4 -0
  42. pyphyschemtools-0.2.1/docs/build/html/_static/doctools.js +150 -0
  43. pyphyschemtools-0.2.1/docs/build/html/_static/documentation_options.js +13 -0
  44. pyphyschemtools-0.2.1/docs/build/html/_static/english-stemmer.js +1066 -0
  45. pyphyschemtools-0.2.1/docs/build/html/_static/file.png +0 -0
  46. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bold.eot +0 -0
  47. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bold.ttf +0 -0
  48. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bold.woff +0 -0
  49. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bold.woff2 +0 -0
  50. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bolditalic.eot +0 -0
  51. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bolditalic.ttf +0 -0
  52. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff +0 -0
  53. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-bolditalic.woff2 +0 -0
  54. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-italic.eot +0 -0
  55. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-italic.ttf +0 -0
  56. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-italic.woff +0 -0
  57. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-italic.woff2 +0 -0
  58. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-regular.eot +0 -0
  59. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-regular.ttf +0 -0
  60. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-regular.woff +0 -0
  61. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/Lato/lato-regular.woff2 +0 -0
  62. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.eot +0 -0
  63. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.ttf +0 -0
  64. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff +0 -0
  65. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-bold.woff2 +0 -0
  66. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.eot +0 -0
  67. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.ttf +0 -0
  68. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff +0 -0
  69. pyphyschemtools-0.2.1/docs/build/html/_static/fonts/RobotoSlab/roboto-slab-v7-regular.woff2 +0 -0
  70. pyphyschemtools-0.2.1/docs/build/html/_static/jquery.js +2 -0
  71. pyphyschemtools-0.2.1/docs/build/html/_static/js/badge_only.js +1 -0
  72. pyphyschemtools-0.2.1/docs/build/html/_static/js/theme.js +1 -0
  73. pyphyschemtools-0.2.1/docs/build/html/_static/js/versions.js +228 -0
  74. pyphyschemtools-0.2.1/docs/build/html/_static/language_data.js +13 -0
  75. pyphyschemtools-0.2.1/docs/build/html/_static/minus.png +0 -0
  76. pyphyschemtools-0.2.1/docs/build/html/_static/plus.png +0 -0
  77. pyphyschemtools-0.2.1/docs/build/html/_static/pygments.css +75 -0
  78. pyphyschemtools-0.2.1/docs/build/html/_static/searchtools.js +693 -0
  79. pyphyschemtools-0.2.1/docs/build/html/_static/sphinx_highlight.js +159 -0
  80. pyphyschemtools-0.2.1/docs/build/html/_static/tools4pyPC_banner.svg +193 -0
  81. pyphyschemtools-0.2.1/docs/build/html/genindex.html +809 -0
  82. pyphyschemtools-0.2.1/docs/build/html/index.html +119 -0
  83. pyphyschemtools-0.2.1/docs/build/html/modules.html +353 -0
  84. pyphyschemtools-0.2.1/docs/build/html/objects.inv +0 -0
  85. pyphyschemtools-0.2.1/docs/build/html/py-modindex.html +191 -0
  86. pyphyschemtools-0.2.1/docs/build/html/pyphyschemtools.html +1883 -0
  87. pyphyschemtools-0.2.1/docs/build/html/pyphyschemtools.icons_logos_banner.html +133 -0
  88. pyphyschemtools-0.2.1/docs/build/html/search.html +121 -0
  89. pyphyschemtools-0.2.1/docs/build/html/searchindex.js +1 -0
  90. pyphyschemtools-0.2.1/docs/build/html/tools4pyPC_banner.svg +193 -0
  91. pyphyschemtools-0.2.1/docs/make.bat +35 -0
  92. pyphyschemtools-0.2.1/docs/source/_static/tools4pyPC_banner.svg +193 -0
  93. pyphyschemtools-0.2.1/docs/source/conf.py +39 -0
  94. pyphyschemtools-0.2.1/docs/source/index.rst +22 -0
  95. pyphyschemtools-0.2.1/docs/source/modules.rst +7 -0
  96. pyphyschemtools-0.2.1/docs/source/pyphyschemtools.icons_logos_banner.rst +7 -0
  97. pyphyschemtools-0.2.1/docs/source/pyphyschemtools.rst +122 -0
  98. pyphyschemtools-0.2.1/push_pyPi_doc.md +64 -0
  99. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/Chem3D-checkpoint.py +855 -0
  100. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/PeriodicTable-checkpoint.py +294 -0
  101. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/aithermo-checkpoint.py +349 -0
  102. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/core-checkpoint.py +120 -0
  103. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/spectra-checkpoint.py +471 -0
  104. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/survey-checkpoint.py +1048 -0
  105. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/sympyUtilities-checkpoint.py +51 -0
  106. pyphyschemtools-0.2.1/pyphyschemtools/.ipynb_checkpoints/tools4AS-checkpoint.py +964 -0
  107. pyphyschemtools-0.2.1/pyphyschemtools/.readthedocs.yaml +23 -0
  108. pyphyschemtools-0.2.1/pyphyschemtools/Chem3D.py +855 -0
  109. pyphyschemtools-0.2.1/pyphyschemtools/ML.py +44 -0
  110. pyphyschemtools-0.2.1/pyphyschemtools/PeriodicTable.py +294 -0
  111. pyphyschemtools-0.2.1/pyphyschemtools/__init__.py +43 -0
  112. pyphyschemtools-0.2.1/pyphyschemtools/aithermo.py +349 -0
  113. pyphyschemtools-0.2.1/pyphyschemtools/cheminformatics.py +230 -0
  114. pyphyschemtools-0.2.1/pyphyschemtools/core.py +120 -0
  115. pyphyschemtools-0.2.1/pyphyschemtools/icons_logos_banner/Logo_pyPhysChem_border.svg +1109 -0
  116. pyphyschemtools-0.2.1/pyphyschemtools/icons_logos_banner/__init__.py +0 -0
  117. pyphyschemtools-0.2.1/pyphyschemtools/icons_logos_banner/logo.png +0 -0
  118. pyphyschemtools-0.2.1/pyphyschemtools/icons_logos_banner/tools4pyPC_banner.png +0 -0
  119. pyphyschemtools-0.2.1/pyphyschemtools/icons_logos_banner/tools4pyPC_banner.svg +193 -0
  120. pyphyschemtools-0.2.1/pyphyschemtools/kinetics.py +193 -0
  121. pyphyschemtools-0.2.1/pyphyschemtools/resources/css/BrainHalfHalf-120x139.base64 +1 -0
  122. pyphyschemtools-0.2.1/pyphyschemtools/resources/css/BrainHalfHalf-120x139.png +0 -0
  123. pyphyschemtools-0.2.1/pyphyschemtools/resources/css/BrainHalfHalf.base64 +8231 -0
  124. pyphyschemtools-0.2.1/pyphyschemtools/resources/css/BrainHalfHalf.png +0 -0
  125. pyphyschemtools-0.2.1/pyphyschemtools/resources/css/BrainHalfHalf.svg +289 -0
  126. pyphyschemtools-0.2.1/pyphyschemtools/resources/css/visualID.css +325 -0
  127. pyphyschemtools-0.2.1/pyphyschemtools/resources/img/Tranformative_3.webp +0 -0
  128. pyphyschemtools-0.2.1/pyphyschemtools/resources/img/Tranformative_3_banner.png +0 -0
  129. pyphyschemtools-0.2.1/pyphyschemtools/resources/img/pyPhysChem_1.png +0 -0
  130. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/BrainHalfHalf.png +0 -0
  131. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/BrainHalfHalf.svg +289 -0
  132. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/GitHub-Logo-C.png +0 -0
  133. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/GitHub-Logo.png +0 -0
  134. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo-Universite-Toulouse-n-2023.png +0 -0
  135. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_1-translucentBgd-woName.png +0 -0
  136. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_1-translucentBgd.png +0 -0
  137. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_1.png +0 -0
  138. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_1.svg +622 -0
  139. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_5.png +0 -0
  140. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_5.svg +48 -0
  141. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Logo_pyPhysChem_border.svg +1109 -0
  142. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Python-logo-notext.svg +265 -0
  143. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Python_logo_and_wordmark.svg.png +0 -0
  144. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/UT3_logoQ.jpg +0 -0
  145. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/UT3_logoQ.png +0 -0
  146. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/Universite-Toulouse-n-2023.svg +141 -0
  147. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/X.png +0 -0
  148. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoAnaconda.png +0 -0
  149. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoAnaconda.webp +0 -0
  150. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoCNRS.png +0 -0
  151. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoDebut.svg +316 -0
  152. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoEnd.svg +172 -0
  153. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoFin.svg +172 -0
  154. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoPPCL.svg +359 -0
  155. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logoPytChem.png +0 -0
  156. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logo_lpcno_300_dpi_notexttransparent.png +0 -0
  157. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logo_pyPhysChem.png +0 -0
  158. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logo_pyPhysChem_0.png +0 -0
  159. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logo_pyPhysChem_0.svg +390 -0
  160. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem.png +0 -0
  161. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_2.webp +0 -0
  162. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_3.webp +0 -0
  163. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_4.webp +0 -0
  164. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_5.png +0 -0
  165. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_5.webp +0 -0
  166. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_6.webp +0 -0
  167. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logopyPhyschem_7.webp +0 -0
  168. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logos-Anaconda-pyPhysChem.png +0 -0
  169. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/logos-Anaconda-pyPhysChem.svg +58 -0
  170. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/pyPCBanner.svg +309 -0
  171. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/pyPhysChem-GitHubSocialMediaTemplate.png +0 -0
  172. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/pyPhysChem-GitHubSocialMediaTemplate.svg +295 -0
  173. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/pyPhysChemBanner.png +0 -0
  174. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/pyPhysChemBanner.svg +639 -0
  175. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/qrcode-pyPhysChem.png +0 -0
  176. pyphyschemtools-0.2.1/pyphyschemtools/resources/svg/repository-open-graph-template.png +0 -0
  177. pyphyschemtools-0.2.1/pyphyschemtools/spectra.py +471 -0
  178. pyphyschemtools-0.2.1/pyphyschemtools/survey.py +599 -0
  179. pyphyschemtools-0.2.1/pyphyschemtools/sympyUtilities.py +51 -0
  180. pyphyschemtools-0.2.1/pyphyschemtools/tools4AS.py +964 -0
  181. pyphyschemtools-0.2.1/pyphyschemtools/visualID.py +101 -0
  182. pyphyschemtools-0.2.1/pyphyschemtools/visualID_Eng.py +175 -0
  183. pyphyschemtools-0.2.1/pyphyschemtools.egg-info/PKG-INFO +37 -0
  184. pyphyschemtools-0.2.1/pyphyschemtools.egg-info/SOURCES.txt +187 -0
  185. pyphyschemtools-0.2.1/pyphyschemtools.egg-info/dependency_links.txt +1 -0
  186. pyphyschemtools-0.2.1/pyphyschemtools.egg-info/requires.txt +16 -0
  187. pyphyschemtools-0.2.1/pyphyschemtools.egg-info/top_level.txt +1 -0
  188. pyphyschemtools-0.2.1/pyproject.toml +49 -0
  189. pyphyschemtools-0.2.1/setup.cfg +4 -0
@@ -0,0 +1,12 @@
1
+ <div style="text-align:center">
2
+ <img src="https://raw.githubusercontent.com/rpoteau/pyphyschemtools/main/pyphyschemtools/icons_logos_banner/tools4pyPC_banner.png" alt="t4pyPCbanner" width="800"/>
3
+ </div>
4
+
5
+ # Changelog
6
+
7
+ ## Version 0.2.0 - 2026-02-02
8
+ ### changed
9
+ - `chem3D.py`. Wrong treatment of pdb coordinates by ase. Main change is `fmt="pdb"` replaced with `fmt="proteindatabank"` in `Chem3D.py`
10
+
11
+ ## Version 0.1.0 - 2026-02-01
12
+ first commit