pypharm 1.4.1__tar.gz → 1.4.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pypharm-1.4.1 → pypharm-1.4.2}/PKG-INFO +1 -1
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/models/pbpk.py +1 -36
- {pypharm-1.4.1 → pypharm-1.4.2}/pypharm.egg-info/PKG-INFO +1 -1
- {pypharm-1.4.1 → pypharm-1.4.2}/setup.py +1 -1
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/__init__.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/algorithms/__init__.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/algorithms/country_optimization.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/algorithms/country_optimization_v2.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/algorithms/country_optimization_v3.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/algorithms/genetic_optimization.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/algorithms/gold_digger_optimization.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/constants.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/models/__init__.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/PyPharm/models/compartment_models.py +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/README.md +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/pypharm.egg-info/SOURCES.txt +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/pypharm.egg-info/dependency_links.txt +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/pypharm.egg-info/requires.txt +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/pypharm.egg-info/top_level.txt +0 -0
- {pypharm-1.4.1 → pypharm-1.4.2}/setup.cfg +0 -0
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@@ -366,39 +366,4 @@ class PBPKmod:
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y_new = np.array([dC_lung_dt, dC_heart_dt, dC_brain_dt, dC_muscle_dt, dC_fat_dt, dC_skin_dt, dC_bone_dt, \
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dC_kidney_dt, dC_liver_dt, dC_gut_dt, dC_spleen_dt, dC_stomach_dt, dC_pancreas_dt, dC_venouse_dt,
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dC_arterial_dt]).astype(np.float64)
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return y_new
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model = PBPKmod(numba_option=True)
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print(model.get_unknown_params())
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model.load_optimization_data(
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time_exp=[12, 60, 3 * 60, 5* 60, 15 * 60, 24 * 60],
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dict_c_exp = {ORGAN_NAMES.LIVER: [103.2 * 1e-6, 134.54 * 1e-6, 87.89 * 1e-6, 81.87 * 1e-6, 45.83 * 1e-6, 28.48 * 1e-6],
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ORGAN_NAMES.LUNG: [26.96 * 1e-6, 22.67 * 1e-6, 15.51 * 1e-6, 12.07 * 1e-6, 4.53 * 1e-6, 0 * 1e-6],
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ORGAN_NAMES.SPLEEN: [11.84 * 1e-6, 12.22 * 1e-6, 8.52 * 1e-6, 7.01 * 1e-6, 3.65 * 1e-6, 2.16 * 1e-6]
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},
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start_c_in_venous=150 * 1e-3 / MODEL_CONST['rat']['venous_blood']['V']
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)
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result = model.optimize(
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method='country_optimization',
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Xmin=17 * [0.0001],
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Xmax=17 * [5],
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M=20,
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N=25,
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n=[1, 10],
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p=[0.00001, 2],
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m=[1, 8],
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k=8,
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l=3,
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ep=[0.2, 0.4],
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tmax=3,
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printing=True,
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)
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model.update_know_params(result)
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result = model(max_time=24 * 60, start_c_in_venous=150 * 1e-3 / MODEL_CONST['rat']['venous_blood']['V'], step=0.1)
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model_furs = PBPKmod(numba_option=True)
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print()
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return y_new
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