pyobo 0.11.1__tar.gz → 0.11.2__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pyobo-0.11.1/src/pyobo.egg-info → pyobo-0.11.2}/PKG-INFO +2 -2
- {pyobo-0.11.1 → pyobo-0.11.2}/pyproject.toml +9 -2
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/version.py +1 -1
- {pyobo-0.11.1 → pyobo-0.11.2/src/pyobo.egg-info}/PKG-INFO +2 -2
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo.egg-info/requires.txt +1 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/LICENSE +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/MANIFEST.in +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/README.md +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/setup.cfg +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/__main__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/alts.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/hierarchy.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/metadata.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/names.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/properties.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/relations.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/species.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/typedefs.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/api/xrefs.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/aws.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/cli/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/cli/aws.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/cli/cli.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/cli/database.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/cli/lookup.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/cli/utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/constants.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/getters.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/gilda_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/identifier_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/mocks.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/normalizer.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/obographs.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/plugins.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/py.typed +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/reader.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/registries/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/registries/metaregistry.json +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/registries/metaregistry.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resource_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/ncbitaxon.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/ncbitaxon.tsv.gz +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/ro.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/ro.tsv +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/so.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/resources/so.tsv +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/README.md +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/agrovoc.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/antibodyregistry.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/biogrid.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/ccle.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/cgnc.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/chebi.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/chembl.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/civic_gene.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/complexportal.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/conso.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/cpt.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/credit.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/cvx.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/depmap.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/dictybase_gene.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/drugbank.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/drugbank_salt.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/drugcentral.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/expasy.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/famplex.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/flybase.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/geonames.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/gmt_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/go.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/gwascentral_phenotype.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/gwascentral_study.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/hgnc.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/hgncgenefamily.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/icd10.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/icd11.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/icd_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/interpro.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/itis.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/kegg/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/kegg/api.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/kegg/genes.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/kegg/genome.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/kegg/pathway.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/mesh.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/mgi.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/mirbase.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/mirbase_constants.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/mirbase_family.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/mirbase_mature.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/msigdb.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/ncbigene.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/npass.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/omim_ps.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/pathbank.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/pfam.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/pfam_clan.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/pid.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/pombase.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/pubchem.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/reactome.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/rgd.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/rhea.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/ror.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/selventa/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/selventa/schem.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/selventa/scomp.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/selventa/sdis.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/selventa/sfam.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/sgd.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/slm.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/umls/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/umls/__main__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/umls/get_synonym_types.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/umls/synonym_types.tsv +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/umls/umls.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/uniprot/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/uniprot/uniprot.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/uniprot/uniprot_ptm.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/wikipathways.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/sources/zfin.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/ssg/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/ssg/base.html +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/ssg/index.html +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/ssg/term.html +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/ssg/typedef.html +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/struct/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/struct/reference.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/struct/struct.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/struct/typedef.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/struct/utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/cache.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/io.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/iter.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/misc.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/ndex_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/utils/path.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/canonicalizer.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/priority.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/biomappings.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/cbms2019.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/chembl.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/compath.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/famplex.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/gilda.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/intact.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/ncit.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/pubchem.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/sources/wikidata.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo/xrefdb/xrefs_pipeline.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo.egg-info/SOURCES.txt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo.egg-info/dependency_links.txt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo.egg-info/entry_points.txt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/src/pyobo.egg-info/top_level.txt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/constants.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/resources/citations.txt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/resources/test_chebi.obo +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/resources/test_msigdb.gmt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/resources/test_wikipathways.gmt +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_alt_ids.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_caches.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_extract.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_get.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_gmt.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_ground.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_mapper.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_sources/__init__.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_sources/test_famplex.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_sources/test_meta.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_struct.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_utils.py +0 -0
- {pyobo-0.11.1 → pyobo-0.11.2}/tests/test_version_pins.py +0 -0
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Name: pyobo
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Summary: A python package for handling and generating OBO
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Author-email: Charles Tapley Hoyt <cthoyt@gmail.com>
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Maintainer-email: Charles Tapley Hoyt <cthoyt@gmail.com>
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# Resource Downloaders
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# prioritized fixing the fully breaking bug in metadata emission described in
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111
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+
# https://github.com/pypa/setuptools/issues/4759. Luckily, the license
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112
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+
# is inferred from the trove classifier for MIT license.
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113
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+
license-files = []
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114
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[tool.setuptools.packages.find]
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# this implicitly sets `packages = ":find"`
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@@ -243,7 +250,7 @@ known-first-party = [
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docstring-code-format = true
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[tool.bumpversion]
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-
current_version = "0.11.
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+
current_version = "0.11.2"
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|
parse = "(?P<major>\\d+)\\.(?P<minor>\\d+)\\.(?P<patch>\\d+)(?:-(?P<release>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?(?:\\+(?P<build>[0-9A-Za-z-]+(?:\\.[0-9A-Za-z-]+)*))?"
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serialize = [
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"{major}.{minor}.{patch}-{release}+{build}",
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@@ -1,6 +1,6 @@
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1
1
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Metadata-Version: 2.1
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2
2
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Name: pyobo
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3
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-
Version: 0.11.
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3
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+
Version: 0.11.2
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4
4
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Summary: A python package for handling and generating OBO
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5
5
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Author-email: Charles Tapley Hoyt <cthoyt@gmail.com>
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6
6
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Maintainer-email: Charles Tapley Hoyt <cthoyt@gmail.com>
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@@ -49,7 +49,6 @@ Classifier: Topic :: Scientific/Engineering :: Bio-Informatics
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49
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Classifier: Topic :: Scientific/Engineering :: Chemistry
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Requires-Python: >=3.9
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Description-Content-Type: text/markdown
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-
License-File: LICENSE
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Requires-Dist: obonet>=0.3.0
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Requires-Dist: click
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Requires-Dist: tqdm
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@@ -70,6 +69,7 @@ Requires-Dist: zenodo-client>=0.0.5
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Requires-Dist: class_resolver
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Requires-Dist: psycopg2-binary
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Requires-Dist: pydantic>=2.0
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+
Requires-Dist: requests-ftp
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Requires-Dist: drugbank_downloader
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Requires-Dist: chembl_downloader
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Requires-Dist: umls_downloader>=0.1.3
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