pynamicalsys 1.2.1__tar.gz → 1.2.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (56) hide show
  1. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/CHANGELOG.md +1 -1
  2. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/PKG-INFO +23 -15
  3. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/README.md +21 -14
  4. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/pyproject.toml +1 -1
  5. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/__version__.py +2 -2
  6. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys.egg-info/PKG-INFO +23 -15
  7. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys.egg-info/requires.txt +1 -0
  8. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/.gitignore +0 -0
  9. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/CITATION.cff +0 -0
  10. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/CONTRIBUTING.md +0 -0
  11. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/LICENSE +0 -0
  12. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/MANIFEST.in +0 -0
  13. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/setup.cfg +0 -0
  14. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/__init__.py +0 -0
  15. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/common/__init__.py +0 -0
  16. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/common/basin_analysis.py +0 -0
  17. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/common/recurrence_quantification_analysis.py +0 -0
  18. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/common/utils.py +0 -0
  19. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/continuous_time/__init__.py +0 -0
  20. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/continuous_time/chaotic_indicators.py +0 -0
  21. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/continuous_time/models.py +0 -0
  22. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/continuous_time/numerical_integrators.py +0 -0
  23. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/continuous_time/trajectory_analysis.py +0 -0
  24. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/continuous_time/validators.py +0 -0
  25. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/core/__init__.py +0 -0
  26. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/core/basin_metrics.py +0 -0
  27. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/core/continuous_dynamical_systems.py +0 -0
  28. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/core/discrete_dynamical_systems.py +0 -0
  29. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/core/plot_styler.py +0 -0
  30. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/core/time_series_metrics.py +0 -0
  31. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/discrete_time/__init__.py +0 -0
  32. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/discrete_time/dynamical_indicators.py +0 -0
  33. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/discrete_time/models.py +0 -0
  34. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/discrete_time/trajectory_analysis.py +0 -0
  35. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/discrete_time/transport.py +0 -0
  36. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys/discrete_time/validators.py +0 -0
  37. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys.egg-info/SOURCES.txt +0 -0
  38. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys.egg-info/dependency_links.txt +0 -0
  39. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/src/pynamicalsys.egg-info/top_level.txt +0 -0
  40. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/continuous_time/test_SALI_and_LDI.ipynb +0 -0
  41. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/continuous_time/test_lyapunov.ipynb +0 -0
  42. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/continuous_time/test_trajectory.ipynb +0 -0
  43. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_FTLE.ipynb +0 -0
  44. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_RTE.ipynb +0 -0
  45. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_SALI.py +0 -0
  46. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_bif_diagram.ipynb +0 -0
  47. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_chaotic_saddle.ipynb +0 -0
  48. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_dig.ipynb +0 -0
  49. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_escape.ipynb +0 -0
  50. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_fractal_dimension.ipynb +0 -0
  51. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_hurst_exponent.ipynb +0 -0
  52. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_lyapunov_exponents.ipynb +0 -0
  53. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_manifold.ipynb +0 -0
  54. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_manifolds.ipynb +0 -0
  55. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_period_counter.ipynb +0 -0
  56. {pynamicalsys-1.2.1 → pynamicalsys-1.2.2}/tests/discrete-time/test_phase_space.ipynb +0 -0
@@ -5,7 +5,7 @@ All notable changes to this project will be documented in this file.
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  The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
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  and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
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- ## [v1.2.1] - 2025-06-29
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+ ## [v1.2.2] - 2025-06-29
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  ### Added
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@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pynamicalsys
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- Version: 1.2.1
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+ Version: 1.2.2
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  Summary: A Python toolkit for the analysis of dynamical systems
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  Author-email: Matheus Rolim Sales <rolim.sales.m@gmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
@@ -689,6 +689,7 @@ Description-Content-Type: text/markdown
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  Requires-Dist: numpy>=1.21
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  Requires-Dist: matplotlib>=3.4
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  Requires-Dist: numba>=0.55
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+ Requires-Dist: scipy>=0.6
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  # pynamicalsys: A Python toolkit for the analysis of dynamical systems
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@@ -698,28 +699,28 @@ Requires-Dist: numba>=0.55
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  ## Overview
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- **pynamicalsys** is designed to provide a fast, flexible, and user-friendly environment for analyzing **nonlinear dynamical systems**. It is designed for students, researchers, educators, and enthusiasts who want to explore the world of chaos and dynamical systems. Beyond standard tools like trajectory generation and Lyapunov exponents calculation, pynamicalsys includes advanced features such as
702
+ **pynamicalsys** is designed to provide a fast, flexible, and user-friendly environment for analyzing **nonlinear dynamical systems**. It is intended for students, researchers, educators, and enthusiasts who want to explore the world of chaos and dynamical systems. Beyond standard tools like trajectory generation and Lyapunov exponents calculation, **pynamicalsys** includes advanced features such as
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- - **Linear dependence index** for chaos detection.
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- - **Recurrence plots** and recurrence time statistics.
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- - Chaos indicators based on **weighted Birkhoff averages**.
706
- - Statistical measures of **diffusion and transport** in dynamical systems.
707
- - Computation of **periodic orbits**, their **stability** and their **manifolds**.
708
- - Basin metric for **quantifying** the structure of **basins of attraction**.
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- - **Plot styling** for consistent and customizable visualizations.
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+ - **Linear dependence index** for chaos detection.
705
+ - **Recurrence plots** and recurrence time statistics.
706
+ - Chaos indicators based on **weighted Birkhoff averages**.
707
+ - Statistical measures of **diffusion and transport** in dynamical systems.
708
+ - Computation of **periodic orbits**, their **stability** and their **manifolds**.
709
+ - Basin metric for **quantifying** the structure of **basins of attraction**.
710
+ - **Plot styling** for consistent and customizable visualizations.
710
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711
- pynamicalsys is built on top of NumPy and Numba, ensuring high performance and efficiency. Thanks to Numba accelerated computation, pynamicalsys offers speedups up to **130x** compared to the original Python implementation of the algorithms. This makes it suitable for large-scale simulations and analyses.
712
+ **pynamicalsys** is built on top of NumPy and Numba, ensuring high performance and efficiency. Thanks to Numba accelerated computation, **pynamicalsys** offers speedups up to **130x** compared to the original Python implementation of the algorithms. This makes it suitable for large-scale simulations and analyses.
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  ## Installation
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  ### Prerequisites
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- - Python 3.8 or higher
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- - pip (Python package installer)
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+ - Python 3.8 or higher
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+ - pip (Python package installer)
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  ### Install via PyPI
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- To install the latest stable release, run:
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+ To install the latest stable release, run in your command line:
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  ```bash
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  $ pip install pynamicalsys
@@ -727,6 +728,13 @@ $ pip install pynamicalsys
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  > **Note:** On **Windows**, it is **strongly recommended** to use [Anaconda](https://www.anaconda.com). It simplifies dependency management and avoids potential issues with scientific libraries during installation. Be sure to run the command from the **Anaconda Prompt**, not from Command Prompt or PowerShell, to ensure the correct environment is activated.
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+ ### Upgrade via PyPI
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+
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+ To upgrade your current version of **pynamicalsys** to the latest stable release, run in your command line:
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+
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+ ```bash
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+ $ pip install **pynamicalsys** --upgrade
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+ ```
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  ### Install from source
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@@ -761,13 +769,13 @@ Currently, our research paper is under review, but in the mean time, if you use
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  ```bibtex
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  @misc{pynamicalsys,
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- title={pynamicalsys: A Python toolkit for the analysis of dynamical systems},
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+ title={pynamicalsys: A Python toolkit for the analysis of dynamical systems},
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  author={Matheus Rolim Sales and Leonardo Costa de Souza and Daniel Borin and Michele Mugnaine and José Danilo Szezech Jr. and Ricardo Luiz Viana and Iberê Luiz Caldas and Edson Denis Leonel and Chris G. Antonopoulos},
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  year={2025},
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  eprint={2506.14044},
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  archivePrefix={arXiv},
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  primaryClass={nlin.CD},
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- url={https://arxiv.org/abs/2506.14044},
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+ url={https://arxiv.org/abs/2506.14044},
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  }
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  ```
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@@ -6,28 +6,28 @@
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  ## Overview
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9
- **pynamicalsys** is designed to provide a fast, flexible, and user-friendly environment for analyzing **nonlinear dynamical systems**. It is designed for students, researchers, educators, and enthusiasts who want to explore the world of chaos and dynamical systems. Beyond standard tools like trajectory generation and Lyapunov exponents calculation, pynamicalsys includes advanced features such as
9
+ **pynamicalsys** is designed to provide a fast, flexible, and user-friendly environment for analyzing **nonlinear dynamical systems**. It is intended for students, researchers, educators, and enthusiasts who want to explore the world of chaos and dynamical systems. Beyond standard tools like trajectory generation and Lyapunov exponents calculation, **pynamicalsys** includes advanced features such as
10
10
 
11
- - **Linear dependence index** for chaos detection.
12
- - **Recurrence plots** and recurrence time statistics.
13
- - Chaos indicators based on **weighted Birkhoff averages**.
14
- - Statistical measures of **diffusion and transport** in dynamical systems.
15
- - Computation of **periodic orbits**, their **stability** and their **manifolds**.
16
- - Basin metric for **quantifying** the structure of **basins of attraction**.
17
- - **Plot styling** for consistent and customizable visualizations.
11
+ - **Linear dependence index** for chaos detection.
12
+ - **Recurrence plots** and recurrence time statistics.
13
+ - Chaos indicators based on **weighted Birkhoff averages**.
14
+ - Statistical measures of **diffusion and transport** in dynamical systems.
15
+ - Computation of **periodic orbits**, their **stability** and their **manifolds**.
16
+ - Basin metric for **quantifying** the structure of **basins of attraction**.
17
+ - **Plot styling** for consistent and customizable visualizations.
18
18
 
19
- pynamicalsys is built on top of NumPy and Numba, ensuring high performance and efficiency. Thanks to Numba accelerated computation, pynamicalsys offers speedups up to **130x** compared to the original Python implementation of the algorithms. This makes it suitable for large-scale simulations and analyses.
19
+ **pynamicalsys** is built on top of NumPy and Numba, ensuring high performance and efficiency. Thanks to Numba accelerated computation, **pynamicalsys** offers speedups up to **130x** compared to the original Python implementation of the algorithms. This makes it suitable for large-scale simulations and analyses.
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  ## Installation
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  ### Prerequisites
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- - Python 3.8 or higher
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- - pip (Python package installer)
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+ - Python 3.8 or higher
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+ - pip (Python package installer)
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28
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  ### Install via PyPI
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30
- To install the latest stable release, run:
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+ To install the latest stable release, run in your command line:
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32
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  ```bash
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  $ pip install pynamicalsys
@@ -35,6 +35,13 @@ $ pip install pynamicalsys
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  > **Note:** On **Windows**, it is **strongly recommended** to use [Anaconda](https://www.anaconda.com). It simplifies dependency management and avoids potential issues with scientific libraries during installation. Be sure to run the command from the **Anaconda Prompt**, not from Command Prompt or PowerShell, to ensure the correct environment is activated.
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38
+ ### Upgrade via PyPI
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+
40
+ To upgrade your current version of **pynamicalsys** to the latest stable release, run in your command line:
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+
42
+ ```bash
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+ $ pip install **pynamicalsys** --upgrade
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+ ```
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  ### Install from source
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@@ -69,13 +76,13 @@ Currently, our research paper is under review, but in the mean time, if you use
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  ```bibtex
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  @misc{pynamicalsys,
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- title={pynamicalsys: A Python toolkit for the analysis of dynamical systems},
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+ title={pynamicalsys: A Python toolkit for the analysis of dynamical systems},
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  author={Matheus Rolim Sales and Leonardo Costa de Souza and Daniel Borin and Michele Mugnaine and José Danilo Szezech Jr. and Ricardo Luiz Viana and Iberê Luiz Caldas and Edson Denis Leonel and Chris G. Antonopoulos},
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  year={2025},
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  eprint={2506.14044},
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  archivePrefix={arXiv},
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  primaryClass={nlin.CD},
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- url={https://arxiv.org/abs/2506.14044},
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+ url={https://arxiv.org/abs/2506.14044},
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  }
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  ```
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  "Topic :: Software Development :: Libraries :: Python Modules",
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  ]
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- dependencies = ["numpy >=1.21", "matplotlib >=3.4", "numba >=0.55"]
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+ dependencies = ["numpy >=1.21", "matplotlib >=3.4", "numba >=0.55", "scipy >=0.6"]
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  requires-python = ">=3.8"
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  [build-system]
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  __version_tuple__: VERSION_TUPLE
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  version_tuple: VERSION_TUPLE
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- __version__ = version = '1.2.1'
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- __version_tuple__ = version_tuple = (1, 2, 1)
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+ __version__ = version = '1.2.2'
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+ __version_tuple__ = version_tuple = (1, 2, 2)
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pynamicalsys
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- Version: 1.2.1
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+ Version: 1.2.2
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  Summary: A Python toolkit for the analysis of dynamical systems
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  Author-email: Matheus Rolim Sales <rolim.sales.m@gmail.com>
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  License: GNU GENERAL PUBLIC LICENSE
@@ -689,6 +689,7 @@ Description-Content-Type: text/markdown
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  Requires-Dist: numpy>=1.21
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  Requires-Dist: matplotlib>=3.4
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  Requires-Dist: numba>=0.55
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+ Requires-Dist: scipy>=0.6
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  # pynamicalsys: A Python toolkit for the analysis of dynamical systems
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@@ -698,28 +699,28 @@ Requires-Dist: numba>=0.55
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699
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  ## Overview
700
701
 
701
- **pynamicalsys** is designed to provide a fast, flexible, and user-friendly environment for analyzing **nonlinear dynamical systems**. It is designed for students, researchers, educators, and enthusiasts who want to explore the world of chaos and dynamical systems. Beyond standard tools like trajectory generation and Lyapunov exponents calculation, pynamicalsys includes advanced features such as
702
+ **pynamicalsys** is designed to provide a fast, flexible, and user-friendly environment for analyzing **nonlinear dynamical systems**. It is intended for students, researchers, educators, and enthusiasts who want to explore the world of chaos and dynamical systems. Beyond standard tools like trajectory generation and Lyapunov exponents calculation, **pynamicalsys** includes advanced features such as
702
703
 
703
- - **Linear dependence index** for chaos detection.
704
- - **Recurrence plots** and recurrence time statistics.
705
- - Chaos indicators based on **weighted Birkhoff averages**.
706
- - Statistical measures of **diffusion and transport** in dynamical systems.
707
- - Computation of **periodic orbits**, their **stability** and their **manifolds**.
708
- - Basin metric for **quantifying** the structure of **basins of attraction**.
709
- - **Plot styling** for consistent and customizable visualizations.
704
+ - **Linear dependence index** for chaos detection.
705
+ - **Recurrence plots** and recurrence time statistics.
706
+ - Chaos indicators based on **weighted Birkhoff averages**.
707
+ - Statistical measures of **diffusion and transport** in dynamical systems.
708
+ - Computation of **periodic orbits**, their **stability** and their **manifolds**.
709
+ - Basin metric for **quantifying** the structure of **basins of attraction**.
710
+ - **Plot styling** for consistent and customizable visualizations.
710
711
 
711
- pynamicalsys is built on top of NumPy and Numba, ensuring high performance and efficiency. Thanks to Numba accelerated computation, pynamicalsys offers speedups up to **130x** compared to the original Python implementation of the algorithms. This makes it suitable for large-scale simulations and analyses.
712
+ **pynamicalsys** is built on top of NumPy and Numba, ensuring high performance and efficiency. Thanks to Numba accelerated computation, **pynamicalsys** offers speedups up to **130x** compared to the original Python implementation of the algorithms. This makes it suitable for large-scale simulations and analyses.
712
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713
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  ## Installation
714
715
 
715
716
  ### Prerequisites
716
717
 
717
- - Python 3.8 or higher
718
- - pip (Python package installer)
718
+ - Python 3.8 or higher
719
+ - pip (Python package installer)
719
720
 
720
721
  ### Install via PyPI
721
722
 
722
- To install the latest stable release, run:
723
+ To install the latest stable release, run in your command line:
723
724
 
724
725
  ```bash
725
726
  $ pip install pynamicalsys
@@ -727,6 +728,13 @@ $ pip install pynamicalsys
727
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728
729
  > **Note:** On **Windows**, it is **strongly recommended** to use [Anaconda](https://www.anaconda.com). It simplifies dependency management and avoids potential issues with scientific libraries during installation. Be sure to run the command from the **Anaconda Prompt**, not from Command Prompt or PowerShell, to ensure the correct environment is activated.
729
730
 
731
+ ### Upgrade via PyPI
732
+
733
+ To upgrade your current version of **pynamicalsys** to the latest stable release, run in your command line:
734
+
735
+ ```bash
736
+ $ pip install **pynamicalsys** --upgrade
737
+ ```
730
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731
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  ### Install from source
732
740
 
@@ -761,13 +769,13 @@ Currently, our research paper is under review, but in the mean time, if you use
761
769
 
762
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  ```bibtex
763
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  @misc{pynamicalsys,
764
- title={pynamicalsys: A Python toolkit for the analysis of dynamical systems},
772
+ title={pynamicalsys: A Python toolkit for the analysis of dynamical systems},
765
773
  author={Matheus Rolim Sales and Leonardo Costa de Souza and Daniel Borin and Michele Mugnaine and José Danilo Szezech Jr. and Ricardo Luiz Viana and Iberê Luiz Caldas and Edson Denis Leonel and Chris G. Antonopoulos},
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  year={2025},
767
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  eprint={2506.14044},
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  archivePrefix={arXiv},
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  primaryClass={nlin.CD},
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- url={https://arxiv.org/abs/2506.14044},
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+ url={https://arxiv.org/abs/2506.14044},
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  }
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  ```
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@@ -1,3 +1,4 @@
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  numpy>=1.21
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  matplotlib>=3.4
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  numba>=0.55
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+ scipy>=0.6
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