pymodaq_data 5.1.7__tar.gz → 5.2.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (34) hide show
  1. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/PKG-INFO +30 -28
  2. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/README.rst +22 -22
  3. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/pyproject.toml +6 -5
  4. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/__init__.py +5 -3
  5. pymodaq_data-5.2.0/src/pymodaq_data/config.py +11 -0
  6. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/data.py +376 -50
  7. pymodaq_data-5.2.0/src/pymodaq_data/h5modules/__init__.py +123 -0
  8. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/backends.py +162 -15
  9. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/browsing.py +12 -8
  10. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/data_saving.py +125 -39
  11. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/exporter.py +1 -1
  12. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/exporters/hyperspy.py +2 -2
  13. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/saving.py +109 -20
  14. pymodaq_data-5.2.0/src/pymodaq_data/h5modules/swmr.py +108 -0
  15. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/numpy_func.py +2 -2
  16. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/plotting/plotter/plotters/matplotlib_plotters.py +5 -4
  17. pymodaq_data-5.2.0/src/pymodaq_data/plotting/utils.py +52 -0
  18. pymodaq_data-5.2.0/src/pymodaq_data/resources/__init__.py +0 -0
  19. pymodaq_data-5.2.0/src/pymodaq_data/resources/config_template.toml +28 -0
  20. pymodaq_data-5.1.7/src/pymodaq_data/h5modules/__init__.py +0 -6
  21. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/.gitignore +0 -0
  22. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/LICENSE +0 -0
  23. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/exporters/__init__.py +0 -0
  24. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/exporters/base.py +0 -0
  25. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/exporters/flimj.py +0 -0
  26. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/h5modules/utils.py +0 -0
  27. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/icon.ico +0 -0
  28. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/plotting/__init__.py +0 -0
  29. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/plotting/plotter/plotter.py +0 -0
  30. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/plotting/plotter/plotters/__init__.py +0 -0
  31. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/post_treatment/__init__.py +0 -0
  32. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/post_treatment/process_to_scalar.py +0 -0
  33. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/slicing.py +0 -0
  34. {pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/splash.png +0 -0
{pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: pymodaq_data
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- Version: 5.1.7
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+ Version: 5.2.0
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  Summary: Modular Data Acquisition with Python
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  Project-URL: Homepage, http://pymodaq.cnrs.fr
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  Project-URL: Source, https://github.com/PyMoDAQ/PyMoDAQ
@@ -34,26 +34,28 @@ Classifier: Intended Audience :: Science/Research
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  Classifier: License :: OSI Approved :: MIT License
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  Classifier: Natural Language :: English
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  Classifier: Operating System :: OS Independent
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- Classifier: Programming Language :: Python :: 3.9
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  Classifier: Programming Language :: Python :: 3.10
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  Classifier: Programming Language :: Python :: 3.11
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  Classifier: Programming Language :: Python :: 3.12
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+ Classifier: Programming Language :: Python :: 3.13
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  Classifier: Topic :: Scientific/Engineering :: Human Machine Interfaces
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  Classifier: Topic :: Scientific/Engineering :: Visualization
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  Classifier: Topic :: Software Development :: Libraries :: Python Modules
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  Classifier: Topic :: Software Development :: User Interfaces
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- Requires-Python: >=3.8
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+ Requires-Python: >=3.10
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+ Requires-Dist: h5py
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  Requires-Dist: pymodaq-utils>=0.0.8
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  Requires-Dist: scipy
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- Requires-Dist: tables<3.9; python_version < '3.10'
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- Requires-Dist: tables>=3.10; python_version >= '3.10'
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  Provides-Extra: dev
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  Requires-Dist: flake8; extra == 'dev'
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- Requires-Dist: h5py; extra == 'dev'
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+ Requires-Dist: h5py>=2.5.0; extra == 'dev'
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  Requires-Dist: hatch; extra == 'dev'
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  Requires-Dist: pytest; extra == 'dev'
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  Requires-Dist: pytest-cov; extra == 'dev'
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  Requires-Dist: pytest-xdist; extra == 'dev'
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+ Requires-Dist: tables>=3.10; extra == 'dev'
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+ Provides-Extra: xarray
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+ Requires-Dist: xarray>=2024.10; extra == 'xarray'
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  Description-Content-Type: text/x-rst
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  .. ############################################################
@@ -69,52 +71,52 @@ PyMoDAQ Data
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  :target: https://pypi.org/project/pymodaq_data/
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  :alt: Latest Version
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- .. image:: https://readthedocs.org/projects/pymodaq/badge/?version=latest
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- :target: https://pymodaq.readthedocs.io/en/stable/?badge=latest
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+ .. image:: https://readthedocs.org/projects/pymodaq/badge/?version=malik-irain-patch-2
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+ :target: https://pymodaq.readthedocs.io/en/stable/?badge=malik-irain-patch-2
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  :alt: Documentation Status
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- .. image:: https://codecov.io/gh/PyMoDAQ/pymodaq_data/branch/5.0.x_dev/graph/badge.svg?token=H32JflMEYR
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- :target: https://codecov.io/gh/PyMoDAQ/pymodaq_data
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+ .. image:: https://codecov.io/gh/PyMoDAQ/PyMoDAQ/branch/malik-irain-patch-2/graph/badge.svg?token=IQNJRCQDM2
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+ :target: https://codecov.io/gh/PyMoDAQ/PyMoDAQ
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  +-------------+-------------+---------------+
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  | | Linux | Windows |
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  +=============+=============+===============+
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- | Python 3.9 | |39-linux| | |39-windows| |
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- +-------------+-------------+---------------+
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  | Python 3.10 | |310-linux| | |310-windows| |
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  +-------------+-------------+---------------+
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  | Python 3.11 | |311-linux| | |311-windows| |
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  +-------------+-------------+---------------+
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  | Python 3.12 | |312-linux| | |312-windows| |
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  +-------------+-------------+---------------+
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+ | Python 3.13 | |313-linux| | |313-windows| |
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+ +-------------+-------------+---------------+
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- .. |39-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/5.1.x/tests_Linux_3.9.svg
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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+ .. |310-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Linux_3.10.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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- .. |311-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/5.1.x/tests_Linux_3.11.svg
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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+ .. |311-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Linux_3.11.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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- .. |312-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/5.1.x/tests_Linux_3.12.svg
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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+ .. |312-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Linux_3.12.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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- .. |39-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/5.1.x/tests_Windows_3.9.svg
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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+ .. |313-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Linux_3.13.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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- .. |310-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/5.1.x/tests_Windows_3.10.svg
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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+ .. |310-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Windows_3.10.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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- :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
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+ .. |311-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Windows_3.11.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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+ .. |312-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/malik-irain-patch-2/tests_Windows_3.12.svg
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+ :target: https://github.com/PyMoDAQ/PyMoDAQ/actions/workflows/tests-data.yml
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{pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/README.rst RENAMED
@@ -11,52 +11,52 @@ PyMoDAQ Data
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  :target: https://pypi.org/project/pymodaq_data/
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  :alt: Latest Version
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- .. image:: https://readthedocs.org/projects/pymodaq/badge/?version=latest
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- :target: https://pymodaq.readthedocs.io/en/stable/?badge=latest
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+ .. image:: https://readthedocs.org/projects/pymodaq/badge/?version=malik-irain-patch-2
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+ :target: https://pymodaq.readthedocs.io/en/stable/?badge=malik-irain-patch-2
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16
  :alt: Documentation Status
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17
 
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- .. image:: https://codecov.io/gh/PyMoDAQ/pymodaq_data/branch/5.0.x_dev/graph/badge.svg?token=H32JflMEYR
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- :target: https://codecov.io/gh/PyMoDAQ/pymodaq_data
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+ .. image:: https://codecov.io/gh/PyMoDAQ/PyMoDAQ/branch/malik-irain-patch-2/graph/badge.svg?token=IQNJRCQDM2
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+ :target: https://codecov.io/gh/PyMoDAQ/PyMoDAQ
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  +-------------+-------------+---------------+
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  | | Linux | Windows |
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  +=============+=============+===============+
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- | Python 3.9 | |39-linux| | |39-windows| |
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- +-------------+-------------+---------------+
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  | Python 3.10 | |310-linux| | |310-windows| |
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  | Python 3.12 | |312-linux| | |312-windows| |
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+ | Python 3.13 | |313-linux| | |313-windows| |
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+ +-------------+-------------+---------------+
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{pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/pyproject.toml RENAMED
@@ -10,7 +10,7 @@ dynamic = [
10
10
  description = "Modular Data Acquisition with Python"
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  readme = "README.rst"
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  license = { file="LICENSE" }
13
- requires-python = ">=3.8"
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+ requires-python = ">=3.10"
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  authors = [
15
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  { name = "Sébastien Weber", email = "sebastien.weber@cemes.fr" },
16
16
  ]
@@ -21,10 +21,10 @@ classifiers = [
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  "License :: OSI Approved :: MIT License",
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  "Natural Language :: English",
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  "Operating System :: OS Independent",
24
- "Programming Language :: Python :: 3.9",
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  "Programming Language :: Python :: 3.10",
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  "Programming Language :: Python :: 3.11",
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  "Programming Language :: Python :: 3.12",
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+ "Programming Language :: Python :: 3.13",
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  "Topic :: Scientific/Engineering :: Human Machine Interfaces",
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  "Topic :: Scientific/Engineering :: Visualization",
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  "Topic :: Software Development :: Libraries :: Python Modules",
@@ -33,15 +33,16 @@ classifiers = [
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  dependencies = [
34
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  "pymodaq_utils>=0.0.8",
35
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  "scipy",
36
- "tables>=3.10; python_version>=\"3.10\"", # issue with some version of required package blosc2>=2.2.8
37
- "tables<3.9; python_version<\"3.10\"", # issue with some version of required package blosc2>=2.2.8
36
+ "h5py",
38
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  ]
39
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  [project.optional-dependencies]
40
+ xarray = ["xarray>=2024.10"]
41
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  dev = [
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  "hatch",
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  "flake8",
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- "h5py",
44
+ "h5py>=2.5.0",
45
+ "tables>=3.10",
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  "pytest",
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  "pytest-cov",
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  "pytest-xdist",
{pymodaq_data-5.1.7 → pymodaq_data-5.2.0}/src/pymodaq_data/__init__.py RENAMED
@@ -13,13 +13,14 @@ try:
13
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  try:
14
14
  logger = set_logger('pymodaq_data', add_handler=True, base_logger=True)
15
15
  except Exception:
16
- print("Couldn't create the local folder to store logs , presets...")
16
+ print("Couldn't create the local folder to store logs , experiments...")
17
17
 
18
+ import pymodaq_data.config
18
19
  logger.info('************************')
19
20
  logger.info('Initializing the pint unit register')
20
21
  logger.info('************************')
21
22
  ureg = UnitRegistry()
22
- ureg.default_format = '~'
23
+ ureg.formatter.default_format = '~'
23
24
  Q_ = ureg.Quantity
24
25
  Unit = ureg.Unit
25
26
  logger.info('')
@@ -45,7 +46,8 @@ try:
45
46
 
46
47
 
47
48
  from pymodaq_data.data import (DataRaw, DataWithAxes, DataToExport, Axis,
48
- DataCalculated, DataDim, DataDistribution, DataSource, DataBase)
49
+ DataCalculated, DataDim, DataDistribution, DataSource, DataBase,
50
+ )
49
51
 
50
52
  except Exception as e:
51
53
  try:
pymodaq_data-5.2.0/src/pymodaq_data/config.py ADDED
@@ -0,0 +1,11 @@
1
+ from pathlib import Path
2
+
3
+ from pymodaq_utils.config import (GlobalConfig, BaseConfig)
4
+
5
+
6
+ @GlobalConfig.register()
7
+ class Config(BaseConfig):
8
+ """Main class to deal with configuration values for this plugin"""
9
+ config_template_path = Path(__file__).parent.joinpath('resources/config_template.toml')
10
+ config_name = f"data"
11
+