pymodaq_data 5.0.26__tar.gz → 5.1.2__tar.gz

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/.gitignore

@@ -1,8 +1,6 @@
 # Compiled python modules.
 *.pyc
 
-_version.py
-
 # Byte-compiled / optimized / DLL files
 __pycache__/
 
@@ -129,3 +127,7 @@ venv.bak/
 *yacctab.py
 *lextab.py
 
+.mu_repo
+
+
+**/README.rst

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/PKG-INFO

@@ -1,10 +1,10 @@
 Metadata-Version: 2.4
 Name: pymodaq_data
-Version: 5.0.26
+Version: 5.1.2
 Summary: Modular Data Acquisition with Python
 Project-URL: Homepage, http://pymodaq.cnrs.fr
-Project-URL: Source, https://github.com/PyMoDAQ/pymodaq_data
-Project-URL: Tracker, https://github.com/PyMoDAQ/pymodaq_data/issues
+Project-URL: Source, https://github.com/PyMoDAQ/PyMoDAQ
+Project-URL: Tracker, https://github.com/PyMoDAQ/PyMoDAQ/issues
 Author-email: Sébastien Weber <sebastien.weber@cemes.fr>
 License: The MIT License (MIT)
         
@@ -62,6 +62,12 @@ Requires-Dist: pytest-cov; extra == 'dev'
 Requires-Dist: pytest-xdist; extra == 'dev'
 Description-Content-Type: text/x-rst
 
+.. ############################################################
+..  WARNING: This file is AUTO-GENERATED from README.rst.tpl.
+..                  ⚠️ DO NOT EDIT MANUALLY ⚠️
+.. ############################################################
+
+
 PyMoDAQ Data
 ############
 
@@ -91,29 +97,29 @@ PyMoDAQ Data
 
 
 
-.. |39-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.9.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |39-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.9.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |310-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.10.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |310-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.10.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |311-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.11.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |311-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.11.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |312-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.12.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |312-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.12.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |39-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.9.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |39-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.9.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |310-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.10.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |310-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.10.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |311-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.11.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |311-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.11.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |312-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.12.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |312-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.12.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
 
 

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/README.rst

@@ -1,3 +1,9 @@
+.. ############################################################
+..  WARNING: This file is AUTO-GENERATED from README.rst.tpl.
+..                  ⚠️ DO NOT EDIT MANUALLY ⚠️
+.. ############################################################
+
+
 PyMoDAQ Data
 ############
 
@@ -27,29 +33,29 @@ PyMoDAQ Data
 
 
 
-.. |39-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.9.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |39-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.9.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |310-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.10.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |310-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.10.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |311-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.11.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |311-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.11.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |312-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Linux_3.12.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |312-linux| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Linux_3.12.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |39-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.9.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |39-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.9.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |310-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.10.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |310-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.10.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |311-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.11.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |311-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.11.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
-.. |312-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/pymodaq_data/badges/5.0.x_dev/tests_Windows_3.12.svg
-    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests.yml
+.. |312-windows| image:: https://raw.githubusercontent.com/PyMoDAQ/PyMoDAQ/badges/pymodaq_data/dev/tests_Windows_3.12.svg
+    :target: https://github.com/PyMoDAQ/pymodaq_data/actions/workflows/tests-data.yml
 
 
 

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/pyproject.toml

@@ -43,8 +43,6 @@ dependencies = [
     "tables<3.9; python_version<\"3.10\"",  # issue with some version of required package blosc2>=2.2.8
 ]
 
-
-
 [project.optional-dependencies]
 dev = [
     "hatch", 
@@ -55,20 +53,20 @@ dev = [
     "pytest-xdist",
 ]
 
-
 [project.urls]
 Homepage = "http://pymodaq.cnrs.fr"
-Source = "https://github.com/PyMoDAQ/pymodaq_data"
-Tracker = "https://github.com/PyMoDAQ/pymodaq_data/issues"
+Source = "https://github.com/PyMoDAQ/PyMoDAQ"
+Tracker = "https://github.com/PyMoDAQ/PyMoDAQ/issues"
+
+[tool.hatch.version.raw-options]
+search_parent_directories = true
+fallback_version = "5.1.0"
+git_describe_command = '''sh -c '(git describe --contains --tags $(git rev-list -1 HEAD -- packages/pymodaq_data) || git describe --tags $(git rev-list -1 HEAD -- packages/pymodaq_data)) | cut -d"~" -f1 ' '''
 
 [tool.hatch.version]
 source = "vcs"
-fallback-version = "5.0.12"
 
 [tool.hatch.build.targets.sdist]
 include = [
     "/src",
 ]
-
-[tool.hatch.build.hooks.vcs]
-version-file = "_version.py"

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/src/pymodaq_data/data.py

@@ -8,6 +8,8 @@ from __future__ import annotations
 
 from abc import ABCMeta, abstractmethod, abstractproperty
 import numbers
+from copy import deepcopy
+
 import numpy as np
 from numpy.lib.mixins import NDArrayOperatorsMixin
 from typing import List, Tuple, Union, Any, Callable
@@ -1081,6 +1083,7 @@ class DataBase(DataLowLevel, NDArrayOperatorsMixin):
         new_data.data = [np.fliplr(dat) for dat in new_data]
         return new_data
 
+
     def append(self, data: DataWithAxes):
         """Append data content if the underlying arrays have the same shape and compatible units"""
         for dat in data:
@@ -2272,6 +2275,16 @@ class DataWithAxes(DataBase, SerializableBase):
                                   labels=self.labels)
         return new_data
 
+    def pad(self, pad_width: Union[int, Tuple[int, int], Iterable[Tuple[int, int]]], **kwargs):
+        """ Pad the data arrays using the numpy pad function
+
+        The accepted pad_witdh type is the same than the numpy pad function
+
+
+        see numpy.pad method for the signature and possible named arguments
+        """
+        return np.pad(self, pad_width, **kwargs)
+
     def ft(self, axis: int = 0, axis_label: str = None,
            axis_units: str = None, labels: List[str] = None) -> DataWithAxes:
         """Process the Fourier Transform of the data on the specified axis and returns the new data
@@ -2557,6 +2570,25 @@ class DataWithAxes(DataBase, SerializableBase):
                         axes.append(ax)
         self.axes = axes
 
+    def rot90(self, k=1, axes=(0, 1)):
+        """ Rotate an array by 90 degrees in the plane specified by axes.
+
+        Valid only for 2D data
+        """
+        if self.dim == DataDim.Data2D:
+            new_data: DataWithAxes = copy.copy(self)
+            new_data.data = [np.rot90(dat, k, axes) for dat in new_data]
+            new_axes = []
+            axis = new_data.get_axis_from_index(0)[0]
+            axis.index = 1
+            new_axes.append(axis)
+            axis = new_data.get_axis_from_index(1)[0]
+            axis.index = 0
+            new_data.axes = new_axes
+            return new_data
+        else:
+            return self
+
     def _compute_slices(self, slices, is_navigation=True, is_index=True):
         """Compute the total slice to apply to the data
 

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/src/pymodaq_data/numpy_func.py

@@ -1,16 +1,21 @@
 from typing import Union, List, TYPE_CHECKING, Iterable, Optional, Callable
 import numbers
+from copy import deepcopy
 
 import numpy as np
 from pint.facets.numpy.numpy_func import HANDLED_UFUNCS  # imported by the data module
 from pymodaq_data import Q_
 from pymodaq_data import data as data_mod
 
+from pymodaq_utils.logger import set_logger, get_module_name
+
 if TYPE_CHECKING:
     from pymodaq_data.data import DataBase, DataWithAxes
 
 HANDLED_FUNCTIONS = {}
 
+logger = set_logger(get_module_name(__file__))
+
 
 def process_arguments_for_ufuncs(input: 'DataBase',
                       inputs: List[Union[numbers.Number, Q_, np.ndarray, 'DataBase']]):
@@ -161,6 +166,38 @@ def _roll(dwa: 'DataWithAxes', *args, **kwargs):
     dwa_func.name += f"_{'roll'}"
     return dwa_func
 
+
+@implements('pad')
+def _pad(dwa: 'DataWithAxes', pad_width, mode = 'constant', **kwargs):
+    dwa.create_missing_axes()
+    for axis in dwa.axes:
+        if not axis.is_axis_linear():
+            raise TypeError('Could not pad data with non linear axes')
+    if isinstance(pad_width, int):
+            pad_width = [(pad_width, pad_width) for _ in range(len(dwa.shape))]
+    elif len(pad_width) == 1:
+        if hasattr(pad_width[0], '__len__') and len(pad_width[0]) == 2:
+            pad_width = [pad_width[0] for _ in range(len(dwa.shape))]
+        else:
+            pad_width = pad_width[0]
+            pad_width = [(pad_width, pad_width) for _ in range(len(dwa.shape))]
+    elif len(pad_width) == 2 and not hasattr(pad_width[0], '__len__'):
+        pad_width = [pad_width for _ in range(len(dwa.shape))]
+    elif len(pad_width) == len(dwa.shape):
+        if not hasattr(pad_width[0], '__len__'):
+            raise TypeError('Could not pad data with the given argument')
+    else:
+        raise TypeError(f'Could not pad data with the given arguments: {pad_width}')
+    dwa_func = dwa.deepcopy_with_new_data(data=[np.pad(array, pad_width, mode, **kwargs) for array in dwa])
+    dwa_func.axes = []
+    for axis in deepcopy(dwa.axes):
+        axis.offset -= pad_width[axis.index][0] * axis.scaling
+        axis.size += pad_width[axis.index][0] + pad_width[axis.index][1]
+        dwa_func.axes.append(axis)
+    dwa_func.name += f"_{'pad'}"
+    return dwa_func
+
+
 # ******** functions that return booleans ***********
 @implements('all')
 def _all(dwa: 'DataWithAxes', *args, axis: Optional[Union[int, Iterable[int]]] = None, **kwargs):

{pymodaq_data-5.0.26 → pymodaq_data-5.1.2}/src/pymodaq_data/plotting/plotter/plotter.py

@@ -83,13 +83,14 @@ class PlotterFactory(ObjectFactory):
     def create(cls, key, **kwargs) -> PlotterBase:
         builder = cls._builders[cls.__name__].get(key)
         if not builder:
-            raise ValueError(key)
+            raise ValueError(f'{key} is not a valid plotter: {cls.backends()}')
         return builder(**kwargs)
 
     def get(self, backend: str, **kwargs):
         return self.create(backend, **kwargs)
 
-    def backends(self) -> List[str]:
+    @classmethod
+    def backends(cls) -> List[str]:
         """Returns the list of plotter backends, main identifier of a given plotter"""
-        return sorted(list(self.builders[self.__class__.__name__].keys()))
+        return sorted(list(cls._builders[cls.__name__].keys()))
 

pymodaq_data-5.0.26/_version.py

@@ -1,34 +0,0 @@
-# file generated by setuptools-scm
-# don't change, don't track in version control
-
-__all__ = [
-    "__version__",
-    "__version_tuple__",
-    "version",
-    "version_tuple",
-    "__commit_id__",
-    "commit_id",
-]
-
-TYPE_CHECKING = False
-if TYPE_CHECKING:
-    from typing import Tuple
-    from typing import Union
-
-    VERSION_TUPLE = Tuple[Union[int, str], ...]
-    COMMIT_ID = Union[str, None]
-else:
-    VERSION_TUPLE = object
-    COMMIT_ID = object
-
-version: str
-__version__: str
-__version_tuple__: VERSION_TUPLE
-version_tuple: VERSION_TUPLE
-commit_id: COMMIT_ID
-__commit_id__: COMMIT_ID
-
-__version__ = version = '5.0.26'
-__version_tuple__ = version_tuple = (5, 0, 26)
-
-__commit_id__ = commit_id = None