pymedphys 0.40.0.dev3__tar.gz → 0.42.0.dev0__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pymedphys-0.42.0.dev0/.gitignore +290 -0
- pymedphys-0.42.0.dev0/CHANGELOG.md +1589 -0
- pymedphys-0.42.0.dev0/CONTRIBUTING.md +72 -0
- pymedphys-0.42.0.dev0/LICENSE +201 -0
- pymedphys-0.42.0.dev0/PKG-INFO +730 -0
- pymedphys-0.42.0.dev0/README.rst +325 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/.pylintrc +59 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/__init__.py +25 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/__main__.py +19 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/NOTES.md +65 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/model_versions.py +17 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_get_queries.py +181 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_pipeline.py +154 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_query_voter.py +210 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_select_tables.py +152 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_utilities.py +147 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/conversation.py +233 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_app.py +24 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_base/delivery.py +217 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_claude/githubassist.py +123 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_claude/respond.py +78 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_config.py +47 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/__init__.py +3 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/download.py +400 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/hashes.json +117 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/retry.py +64 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/upload.py +216 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/urls.json +46 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/zenodo.json +5 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_data/zenodo.py +97 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_delivery.py +19 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dev/build.py +51 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dev/docs.py +89 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dev/paths.py +20 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dev/propagate.py +281 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dev/tests.py +267 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/__init__.py +26 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/api.py +451 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/core.py +348 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/identifying_keywords.json +219 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/strategy.py +69 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/collection.py +153 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/compat.py +63 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/connect/base.py +43 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/connect/listen.py +225 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/connect/send.py +130 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/__init__.py +11 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/baseline_dicom_dictionary.json +29773 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/baseline_repeaters_dictionary.json +618 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/core.py +132 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/coords.py +221 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/create.py +79 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/ct/extend.py +159 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/delivery/__init__.py +3 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/delivery/core.py +433 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/delivery/utilities.py +62 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/dose.py +375 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/header.py +167 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/orientation.py +115 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/__init__.py +22 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/adjust.py +40 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/build.py +91 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/core.py +283 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/sorting.py +57 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/structure/__init__.py +88 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/structure/merge.py +218 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/uid.py +26 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/utilities/__init__.py +4 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/utilities/display.py +86 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/utilities/files.py +18 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_electronfactors/__init__.py +27 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_electronfactors/core.py +495 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_electronfactors/visualisation.py +112 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/cube.py +455 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/dicomrtvisualisation/visualise.py +1061 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mapcheck/__init__.py +19 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mapcheck/core.py +59 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/__init__.py +20 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/api.py +98 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/core.py +186 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/directory.py +73 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/mcc2csv.py +73 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/multiple.py +138 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/normalisation.py +186 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/profiler/__init__.py +19 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/profiler/core.py +261 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/collequivalent.py +88 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/devicessncprofiler.py +305 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/narrow_png.py +100 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/profile.py +856 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/sinogram.py +221 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/tomo_sinogram_csv2pdf.py +108 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/classes.py +324 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/complexity.py +69 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/info.py +68 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/operations.py +123 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/readme.txt +9 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/pseudonymisation/__init__.py +205 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/pseudonymisation/identifying_uids.json +33 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/pseudonymisation/strategy.py +494 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/quickcheck/__init__.py +17 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/quickcheck/qcheck.py +229 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/quickcheck/quickcheck_cli.py +45 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/serviceplans/create.py +178 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/__init__.py +14 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/anonymise_monaco.py +111 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/dashboard.py +106 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/data/demographic.000000 +33 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/dicom_explorer.py +40 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/electrons.py +335 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/icom.py +62 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/iviewdb.py +115 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/mosaiq_claude_chat/__init__.py +21 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/mosaiq_claude_chat/app.py +179 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/mosaiq_to_csv.py +330 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/sum_doses.py +136 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/trf_explorer.py +26 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/dbf.py +10 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/dicom/loader.py +137 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/icom.py +291 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iteration.py +43 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_angles.py +225 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_dbf.py +280 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_filtering.py +83 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_frames.py +296 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_sync.py +321 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_utilities.py +145 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/ui.py +398 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/__init__.py +23 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/api/__init__.py +17 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/api/core.py +80 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/implementation/__init__.py +18 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/implementation/filter.py +162 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/implementation/shell.py +586 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/utilities/__init__.py +22 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/utilities/core.py +91 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_gui.py +56 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_icom/delivery.py +103 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_icom/extract.py +91 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_icom/listener.py +108 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_icom/mappings.py +26 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_icom/observer.py +71 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_icom/patients.py +199 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_imports/__init__.py +20 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_imports/_parse.py +39 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_imports/imports.py +100 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_interp/interp.py +484 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_losslessjpeg/__init__.py +20 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/delivery/__init__.py +3 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/delivery/core.py +89 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/metersetmap.py +682 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/plt/__init__.py +19 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/plt/helpers.py +29 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mocks/profiles.py +71 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mocks/wlutz.py +122 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_monaco/delivery.py +149 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_monaco/patient.py +42 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_monaco/utility.py +31 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/api.py +192 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/connect.py +140 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/constants.py +50 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/credentials.py +258 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/delivery.py +367 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/helpers.py +303 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/__init__.py +1 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Chklist.csv +52 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Ident.csv +824 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Patient.csv +824 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/PatientFamilyHistory.csv +3 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/PatientName.csv +3 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/QCLTask.csv +205 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Site.csv +360 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Staff.csv +203 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/TrackTreatment.csv +252 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/TxField.csv +602 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/TxFieldPoint.csv +5243 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/types_map.toml +541 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/extract_from_bak.py +100 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/from_csv.py +92 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/generate.py +500 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/paths.py +4 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/server_from_bak.py +84 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/utilities.py +141 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/sessions.py +289 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/strategy_pynom_msq.yml +129 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/LICENSE-MIT +21 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/__init__.py +21 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/constants.py +89 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/image.py +225 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinn_yaml.py +130 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle.py +326 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_cli.py +235 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_exceptions.py +54 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_image.py +204 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_plan.py +449 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/rtdose.py +491 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/rtplan.py +999 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/rtstruct.py +552 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_root.py +16 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/__init__.py +3 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/__init__.py +21 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_config.py +188 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_deliveries.py +50 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_dicom.py +199 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_icom.py +226 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_monaco.py +88 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_mosaiq.py +98 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_trf.py +301 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_utilities.py +26 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/config.toml +25 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/main.py +792 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/pseudonymise.py +250 -0
- pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/categories.py +10 -0
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- {pymedphys-0.40.0.dev3/lib/pymedphys/_experimental → pymedphys-0.42.0.dev0/lib/pymedphys/_dicom}/__init__.py +0 -0
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- {pymedphys-0.40.0.dev3/lib/pymedphys/_experimental/plancomplexity → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_experimental/serviceplans → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_experimental/streamlit → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/paulking/sinogram.csv +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/paulking/tempCodeRunnerFile.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_experimental/streamlit/utilities → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/plancomplexity/data.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_experimental/streamlit/utilities/dicom → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/serviceplans}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/serviceplans/templates/24mm_x_20mm_rectangle.dcm +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/serviceplans/templates/FFF_example.dcm +0 -0
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- {pymedphys-0.40.0.dev3/lib/pymedphys/_icom → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_metersetmap → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/dicom}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_mocks → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_monaco → pymedphys-0.42.0.dev0/lib/pymedphys/_icom}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_mosaiq → pymedphys-0.42.0.dev0/lib/pymedphys/_interp}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_streamlit → pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_streamlit/utilities → pymedphys-0.42.0.dev0/lib/pymedphys/_mocks}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_trf → pymedphys-0.42.0.dev0/lib/pymedphys/_monaco}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_utilities → pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/_vendor → pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/docs → pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_streamlit/pymedphys-favicon.png +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_streamlit/pymedphys-title.png +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests → pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/utilities}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/coordinates → pymedphys-0.42.0.dev0/lib/pymedphys/_trf}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/delivery → pymedphys-0.42.0.dev0/lib/pymedphys/_utilities}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom → pymedphys-0.42.0.dev0/lib/pymedphys/_vendor}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom/rtplan → pymedphys-0.42.0.dev0/lib/pymedphys/docs}/__init__.py +0 -0
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- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/logfile_example.png +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/open_with_code.png +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/sql_example.png +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/users/howto/tunnels/img/set-dns.png +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/users/howto/tunnels/img/set-ip.png +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom/structure → pymedphys-0.42.0.dev0/lib/pymedphys/tests}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/e2e → pymedphys-0.42.0.dev0/lib/pymedphys/tests/cli}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental → pymedphys-0.42.0.dev0/lib/pymedphys/tests/coordinates}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/mapcheck → pymedphys-0.42.0.dev0/lib/pymedphys/tests/data}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/mephysto → pymedphys-0.42.0.dev0/lib/pymedphys/tests/delivery}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/paulking → pymedphys-0.42.0.dev0/lib/pymedphys/tests/dev}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/profiler → pymedphys-0.42.0.dev0/lib/pymedphys/tests/dicom}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/tests/dicom/data/rtplan/06MV_plan.dcm +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/pseudonymisation → pymedphys-0.42.0.dev0/lib/pymedphys/tests/dicom/rtplan}/__init__.py +0 -0
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- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/gamma → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental}/__init__.py +0 -0
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- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/logfiles → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/mephysto}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom/scratch → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/mephysto/data/baselines}/.gitkeep +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/logging → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/paulking}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/losslessjpeg → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/profiler}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/metersetmap → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/pseudonymisation}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/mocks → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/quickcheck}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/monaco → pymedphys-0.42.0.dev0/lib/pymedphys/tests/gamma}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq → pymedphys-0.42.0.dev0/lib/pymedphys/tests/icom}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data → pymedphys-0.42.0.dev0/lib/pymedphys/tests/interp}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/pinnacle → pymedphys-0.42.0.dev0/lib/pymedphys/tests/logfiles}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/trf → pymedphys-0.42.0.dev0/lib/pymedphys/tests/logging}/__init__.py +0 -0
- {pymedphys-0.40.0.dev3/lib/pymedphys/tests/utilities → pymedphys-0.42.0.dev0/lib/pymedphys/tests/losslessjpeg}/__init__.py +0 -0
- /pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/mephysto/data/baselines/.gitkeep → /pymedphys-0.42.0.dev0/lib/pymedphys/tests/metersetmap/__init__.py +0 -0
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+
|
|
161
|
+
# nyc test coverage
|
|
162
|
+
.nyc_output
|
|
163
|
+
|
|
164
|
+
# Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
|
|
165
|
+
.grunt
|
|
166
|
+
|
|
167
|
+
# Bower dependency directory (https://bower.io/)
|
|
168
|
+
bower_components
|
|
169
|
+
|
|
170
|
+
# node-waf configuration
|
|
171
|
+
.lock-wscript
|
|
172
|
+
|
|
173
|
+
# Compiled binary addons (https://nodejs.org/api/addons.html)
|
|
174
|
+
build/Release
|
|
175
|
+
|
|
176
|
+
# Dependency directories
|
|
177
|
+
node_modules/
|
|
178
|
+
jspm_packages/
|
|
179
|
+
|
|
180
|
+
# Snowpack dependency directory (https://snowpack.dev/)
|
|
181
|
+
web_modules/
|
|
182
|
+
|
|
183
|
+
# TypeScript cache
|
|
184
|
+
*.tsbuildinfo
|
|
185
|
+
|
|
186
|
+
# Optional npm cache directory
|
|
187
|
+
.npm
|
|
188
|
+
|
|
189
|
+
# Optional eslint cache
|
|
190
|
+
.eslintcache
|
|
191
|
+
|
|
192
|
+
# Microbundle cache
|
|
193
|
+
.rpt2_cache/
|
|
194
|
+
.rts2_cache_cjs/
|
|
195
|
+
.rts2_cache_es/
|
|
196
|
+
.rts2_cache_umd/
|
|
197
|
+
|
|
198
|
+
# Optional REPL history
|
|
199
|
+
.node_repl_history
|
|
200
|
+
|
|
201
|
+
# Output of 'npm pack'
|
|
202
|
+
*.tgz
|
|
203
|
+
|
|
204
|
+
# Yarn Integrity file
|
|
205
|
+
.yarn-integrity
|
|
206
|
+
|
|
207
|
+
# dotenv environment variables file
|
|
208
|
+
.env
|
|
209
|
+
.env.test
|
|
210
|
+
|
|
211
|
+
# parcel-bundler cache (https://parceljs.org/)
|
|
212
|
+
.cache
|
|
213
|
+
.parcel-cache
|
|
214
|
+
|
|
215
|
+
# Next.js build output
|
|
216
|
+
.next
|
|
217
|
+
|
|
218
|
+
# Nuxt.js build / generate output
|
|
219
|
+
.nuxt
|
|
220
|
+
dist
|
|
221
|
+
|
|
222
|
+
# Gatsby files
|
|
223
|
+
.cache/
|
|
224
|
+
# Comment in the public line in if your project uses Gatsby and not Next.js
|
|
225
|
+
# https://nextjs.org/blog/next-9-1#public-directory-support
|
|
226
|
+
# public
|
|
227
|
+
|
|
228
|
+
# vuepress build output
|
|
229
|
+
.vuepress/dist
|
|
230
|
+
|
|
231
|
+
# Serverless directories
|
|
232
|
+
.serverless/
|
|
233
|
+
|
|
234
|
+
# FuseBox cache
|
|
235
|
+
.fusebox/
|
|
236
|
+
|
|
237
|
+
# DynamoDB Local files
|
|
238
|
+
.dynamodb/
|
|
239
|
+
|
|
240
|
+
# TernJS port file
|
|
241
|
+
.tern-port
|
|
242
|
+
|
|
243
|
+
# Stores VSCode versions used for testing VSCode extensions
|
|
244
|
+
.vscode-test
|
|
245
|
+
|
|
246
|
+
# yarn v2
|
|
247
|
+
|
|
248
|
+
.yarn/cache
|
|
249
|
+
.yarn/unplugged
|
|
250
|
+
.yarn/build-state.yml
|
|
251
|
+
.pnp.*
|
|
252
|
+
|
|
253
|
+
|
|
254
|
+
|
|
255
|
+
##############################################################################
|
|
256
|
+
### CUSTOM ###
|
|
257
|
+
##############################################################################
|
|
258
|
+
|
|
259
|
+
.~lock*
|
|
260
|
+
|
|
261
|
+
# IDE configuration
|
|
262
|
+
.idea/
|
|
263
|
+
.vscode/*
|
|
264
|
+
!.vscode/settings.json
|
|
265
|
+
!.vscode/extensions.json
|
|
266
|
+
|
|
267
|
+
# Test results
|
|
268
|
+
junit/
|
|
269
|
+
|
|
270
|
+
# Allow for ignoring by prepending scratch-
|
|
271
|
+
scratch-*
|
|
272
|
+
|
|
273
|
+
# USER DEFINED
|
|
274
|
+
*.pdf
|
|
275
|
+
|
|
276
|
+
v*.tar.gz
|
|
277
|
+
|
|
278
|
+
*.py.*.py
|
|
279
|
+
*.exe
|
|
280
|
+
|
|
281
|
+
*-demo
|
|
282
|
+
*-demo-files
|
|
283
|
+
downloads/
|
|
284
|
+
offline/
|
|
285
|
+
.history/
|
|
286
|
+
scratch/
|
|
287
|
+
|
|
288
|
+
.devcontainer/*
|
|
289
|
+
.venv*
|
|
290
|
+
.DS_Store
|