pymedphys 0.40.0.dev3__tar.gz → 0.42.0.dev0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (917) hide show
  1. pymedphys-0.42.0.dev0/.gitignore +290 -0
  2. pymedphys-0.42.0.dev0/CHANGELOG.md +1589 -0
  3. pymedphys-0.42.0.dev0/CONTRIBUTING.md +72 -0
  4. pymedphys-0.42.0.dev0/LICENSE +201 -0
  5. pymedphys-0.42.0.dev0/PKG-INFO +730 -0
  6. pymedphys-0.42.0.dev0/README.rst +325 -0
  7. pymedphys-0.42.0.dev0/lib/pymedphys/.pylintrc +59 -0
  8. pymedphys-0.42.0.dev0/lib/pymedphys/__init__.py +25 -0
  9. pymedphys-0.42.0.dev0/lib/pymedphys/__main__.py +19 -0
  10. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/NOTES.md +65 -0
  11. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/model_versions.py +17 -0
  12. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_get_queries.py +181 -0
  13. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_pipeline.py +154 -0
  14. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_query_voter.py +210 -0
  15. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_select_tables.py +152 -0
  16. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/_utilities.py +147 -0
  17. pymedphys-0.42.0.dev0/lib/pymedphys/_ai/sql_agent/conversation.py +233 -0
  18. pymedphys-0.42.0.dev0/lib/pymedphys/_app.py +24 -0
  19. pymedphys-0.42.0.dev0/lib/pymedphys/_base/delivery.py +217 -0
  20. pymedphys-0.42.0.dev0/lib/pymedphys/_claude/githubassist.py +123 -0
  21. pymedphys-0.42.0.dev0/lib/pymedphys/_claude/respond.py +78 -0
  22. pymedphys-0.42.0.dev0/lib/pymedphys/_config.py +47 -0
  23. pymedphys-0.42.0.dev0/lib/pymedphys/_data/__init__.py +3 -0
  24. pymedphys-0.42.0.dev0/lib/pymedphys/_data/download.py +400 -0
  25. pymedphys-0.42.0.dev0/lib/pymedphys/_data/hashes.json +117 -0
  26. pymedphys-0.42.0.dev0/lib/pymedphys/_data/retry.py +64 -0
  27. pymedphys-0.42.0.dev0/lib/pymedphys/_data/upload.py +216 -0
  28. pymedphys-0.42.0.dev0/lib/pymedphys/_data/urls.json +46 -0
  29. pymedphys-0.42.0.dev0/lib/pymedphys/_data/zenodo.json +5 -0
  30. pymedphys-0.42.0.dev0/lib/pymedphys/_data/zenodo.py +97 -0
  31. pymedphys-0.42.0.dev0/lib/pymedphys/_delivery.py +19 -0
  32. pymedphys-0.42.0.dev0/lib/pymedphys/_dev/build.py +51 -0
  33. pymedphys-0.42.0.dev0/lib/pymedphys/_dev/docs.py +89 -0
  34. pymedphys-0.42.0.dev0/lib/pymedphys/_dev/paths.py +20 -0
  35. pymedphys-0.42.0.dev0/lib/pymedphys/_dev/propagate.py +281 -0
  36. pymedphys-0.42.0.dev0/lib/pymedphys/_dev/tests.py +267 -0
  37. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/__init__.py +26 -0
  38. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/api.py +451 -0
  39. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/core.py +348 -0
  40. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/identifying_keywords.json +219 -0
  41. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/anonymise/strategy.py +69 -0
  42. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/collection.py +153 -0
  43. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/compat.py +63 -0
  44. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/connect/base.py +43 -0
  45. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/connect/listen.py +225 -0
  46. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/connect/send.py +130 -0
  47. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/__init__.py +11 -0
  48. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/baseline_dicom_dictionary.json +29773 -0
  49. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/baseline_repeaters_dictionary.json +618 -0
  50. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/constants/core.py +132 -0
  51. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/coords.py +221 -0
  52. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/create.py +79 -0
  53. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/ct/extend.py +159 -0
  54. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/delivery/__init__.py +3 -0
  55. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/delivery/core.py +433 -0
  56. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/delivery/utilities.py +62 -0
  57. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/dose.py +375 -0
  58. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/header.py +167 -0
  59. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/orientation.py +115 -0
  60. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/__init__.py +22 -0
  61. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/adjust.py +40 -0
  62. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/build.py +91 -0
  63. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/rtplan/core.py +283 -0
  64. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/sorting.py +57 -0
  65. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/structure/__init__.py +88 -0
  66. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/structure/merge.py +218 -0
  67. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/uid.py +26 -0
  68. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/utilities/__init__.py +4 -0
  69. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/utilities/display.py +86 -0
  70. pymedphys-0.42.0.dev0/lib/pymedphys/_dicom/utilities/files.py +18 -0
  71. pymedphys-0.42.0.dev0/lib/pymedphys/_electronfactors/__init__.py +27 -0
  72. pymedphys-0.42.0.dev0/lib/pymedphys/_electronfactors/core.py +495 -0
  73. pymedphys-0.42.0.dev0/lib/pymedphys/_electronfactors/visualisation.py +112 -0
  74. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/cube.py +455 -0
  75. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/dicomrtvisualisation/visualise.py +1061 -0
  76. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mapcheck/__init__.py +19 -0
  77. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mapcheck/core.py +59 -0
  78. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/__init__.py +20 -0
  79. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/api.py +98 -0
  80. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/core.py +186 -0
  81. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/directory.py +73 -0
  82. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/mcc2csv.py +73 -0
  83. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/multiple.py +138 -0
  84. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/mephysto/normalisation.py +186 -0
  85. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/profiler/__init__.py +19 -0
  86. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/fileformats/profiler/core.py +261 -0
  87. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/collequivalent.py +88 -0
  88. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/devicessncprofiler.py +305 -0
  89. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/narrow_png.py +100 -0
  90. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/profile.py +856 -0
  91. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/sinogram.py +221 -0
  92. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/paulking/tomo_sinogram_csv2pdf.py +108 -0
  93. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/classes.py +324 -0
  94. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/complexity.py +69 -0
  95. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/info.py +68 -0
  96. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/operations.py +123 -0
  97. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/plancomplexity/readme.txt +9 -0
  98. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/pseudonymisation/__init__.py +205 -0
  99. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/pseudonymisation/identifying_uids.json +33 -0
  100. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/pseudonymisation/strategy.py +494 -0
  101. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/quickcheck/__init__.py +17 -0
  102. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/quickcheck/qcheck.py +229 -0
  103. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/quickcheck/quickcheck_cli.py +45 -0
  104. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/serviceplans/create.py +178 -0
  105. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/__init__.py +14 -0
  106. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/anonymise_monaco.py +111 -0
  107. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/dashboard.py +106 -0
  108. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/data/demographic.000000 +33 -0
  109. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/dicom_explorer.py +40 -0
  110. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/electrons.py +335 -0
  111. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/icom.py +62 -0
  112. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/iviewdb.py +115 -0
  113. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/mosaiq_claude_chat/__init__.py +21 -0
  114. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/mosaiq_claude_chat/app.py +179 -0
  115. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/mosaiq_to_csv.py +330 -0
  116. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/sum_doses.py +136 -0
  117. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/apps/trf_explorer.py +26 -0
  118. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/dbf.py +10 -0
  119. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/dicom/loader.py +137 -0
  120. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/icom.py +291 -0
  121. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iteration.py +43 -0
  122. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_angles.py +225 -0
  123. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_dbf.py +280 -0
  124. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_filtering.py +83 -0
  125. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_frames.py +296 -0
  126. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_sync.py +321 -0
  127. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/_utilities.py +145 -0
  128. pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/iview/ui.py +398 -0
  129. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/__init__.py +23 -0
  130. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/api/__init__.py +17 -0
  131. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/api/core.py +80 -0
  132. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/implementation/__init__.py +18 -0
  133. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/implementation/filter.py +162 -0
  134. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/implementation/shell.py +586 -0
  135. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/utilities/__init__.py +22 -0
  136. pymedphys-0.42.0.dev0/lib/pymedphys/_gamma/utilities/core.py +91 -0
  137. pymedphys-0.42.0.dev0/lib/pymedphys/_gui.py +56 -0
  138. pymedphys-0.42.0.dev0/lib/pymedphys/_icom/delivery.py +103 -0
  139. pymedphys-0.42.0.dev0/lib/pymedphys/_icom/extract.py +91 -0
  140. pymedphys-0.42.0.dev0/lib/pymedphys/_icom/listener.py +108 -0
  141. pymedphys-0.42.0.dev0/lib/pymedphys/_icom/mappings.py +26 -0
  142. pymedphys-0.42.0.dev0/lib/pymedphys/_icom/observer.py +71 -0
  143. pymedphys-0.42.0.dev0/lib/pymedphys/_icom/patients.py +199 -0
  144. pymedphys-0.42.0.dev0/lib/pymedphys/_imports/__init__.py +20 -0
  145. pymedphys-0.42.0.dev0/lib/pymedphys/_imports/_parse.py +39 -0
  146. pymedphys-0.42.0.dev0/lib/pymedphys/_imports/imports.py +100 -0
  147. pymedphys-0.42.0.dev0/lib/pymedphys/_interp/interp.py +484 -0
  148. pymedphys-0.42.0.dev0/lib/pymedphys/_losslessjpeg/__init__.py +20 -0
  149. pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/delivery/__init__.py +3 -0
  150. pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/delivery/core.py +89 -0
  151. pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/metersetmap.py +682 -0
  152. pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/plt/__init__.py +19 -0
  153. pymedphys-0.42.0.dev0/lib/pymedphys/_metersetmap/plt/helpers.py +29 -0
  154. pymedphys-0.42.0.dev0/lib/pymedphys/_mocks/profiles.py +71 -0
  155. pymedphys-0.42.0.dev0/lib/pymedphys/_mocks/wlutz.py +122 -0
  156. pymedphys-0.42.0.dev0/lib/pymedphys/_monaco/delivery.py +149 -0
  157. pymedphys-0.42.0.dev0/lib/pymedphys/_monaco/patient.py +42 -0
  158. pymedphys-0.42.0.dev0/lib/pymedphys/_monaco/utility.py +31 -0
  159. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/api.py +192 -0
  160. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/connect.py +140 -0
  161. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/constants.py +50 -0
  162. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/credentials.py +258 -0
  163. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/delivery.py +367 -0
  164. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/helpers.py +303 -0
  165. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/__init__.py +1 -0
  166. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Chklist.csv +52 -0
  167. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Ident.csv +824 -0
  168. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Patient.csv +824 -0
  169. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/PatientFamilyHistory.csv +3 -0
  170. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/PatientName.csv +3 -0
  171. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/QCLTask.csv +205 -0
  172. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Site.csv +360 -0
  173. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/Staff.csv +203 -0
  174. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/TrackTreatment.csv +252 -0
  175. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/TxField.csv +602 -0
  176. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/TxFieldPoint.csv +5243 -0
  177. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data/types_map.toml +541 -0
  178. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/extract_from_bak.py +100 -0
  179. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/from_csv.py +92 -0
  180. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/generate.py +500 -0
  181. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/paths.py +4 -0
  182. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/server_from_bak.py +84 -0
  183. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/utilities.py +141 -0
  184. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/sessions.py +289 -0
  185. pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/strategy_pynom_msq.yml +129 -0
  186. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/LICENSE-MIT +21 -0
  187. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/__init__.py +21 -0
  188. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/constants.py +89 -0
  189. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/image.py +225 -0
  190. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinn_yaml.py +130 -0
  191. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle.py +326 -0
  192. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_cli.py +235 -0
  193. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_exceptions.py +54 -0
  194. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_image.py +204 -0
  195. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/pinnacle_plan.py +449 -0
  196. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/rtdose.py +491 -0
  197. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/rtplan.py +999 -0
  198. pymedphys-0.42.0.dev0/lib/pymedphys/_pinnacle/rtstruct.py +552 -0
  199. pymedphys-0.42.0.dev0/lib/pymedphys/_root.py +16 -0
  200. pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/__init__.py +3 -0
  201. pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/__init__.py +21 -0
  202. pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit/apps/metersetmap/_config.py +188 -0
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  813. pymedphys-0.40.0.dev3/lib/pymedphys/tests/gamma/test_agnew_mcgarry.py +0 -184
  814. pymedphys-0.40.0.dev3/lib/pymedphys/tests/gamma/test_gamma_shell.py +0 -213
  815. pymedphys-0.40.0.dev3/lib/pymedphys/tests/icom/test_icom_cli.py +0 -70
  816. pymedphys-0.40.0.dev3/lib/pymedphys/tests/logfiles/test_filelogic.py +0 -32
  817. pymedphys-0.40.0.dev3/lib/pymedphys/tests/logging/test_logging_setting.py +0 -83
  818. pymedphys-0.40.0.dev3/lib/pymedphys/tests/losslessjpeg/test_lossless_jpeg.py +0 -27
  819. pymedphys-0.40.0.dev3/lib/pymedphys/tests/metersetmap/test_metersetmap_leaf_gap.py +0 -72
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  824. pymedphys-0.40.0.dev3/lib/pymedphys/tests/monaco/test_delivery_from_tel.py +0 -64
  825. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/_connect.py +0 -37
  826. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/Chklist.csv +0 -4
  827. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/Ident.csv +0 -3
  828. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/Patient.csv +0 -3
  829. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/QCLTask.csv +0 -4
  830. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/Site.csv +0 -3
  831. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/Staff.csv +0 -4
  832. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/TrackTreatment.csv +0 -11
  833. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/TxField.csv +0 -3
  834. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/TxFieldPoint.csv +0 -118
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  837. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data/types_map.toml +0 -527
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  839. pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/test_mimicked_db.py +0 -170
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  847. pymedphys-0.40.0.dev3/lib/pymedphys/trf.py +0 -4
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  860. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/paulking/sinogram.csv +0 -0
  861. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/paulking/tempCodeRunnerFile.py +0 -0
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  863. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/plancomplexity/data.py +0 -0
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  866. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_experimental/serviceplans/templates/FFF_example.dcm +0 -0
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  869. {pymedphys-0.40.0.dev3/lib/pymedphys/_icom → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities}/__init__.py +0 -0
  870. {pymedphys-0.40.0.dev3/lib/pymedphys/_metersetmap → pymedphys-0.42.0.dev0/lib/pymedphys/_experimental/streamlit/utilities/dicom}/__init__.py +0 -0
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  875. {pymedphys-0.40.0.dev3/lib/pymedphys/_streamlit/utilities → pymedphys-0.42.0.dev0/lib/pymedphys/_mocks}/__init__.py +0 -0
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  877. {pymedphys-0.40.0.dev3/lib/pymedphys/_utilities → pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq}/__init__.py +0 -0
  878. {pymedphys-0.40.0.dev3/lib/pymedphys/_vendor → pymedphys-0.42.0.dev0/lib/pymedphys/_mosaiq/mock/data}/__init__.py +0 -0
  879. {pymedphys-0.40.0.dev3/lib/pymedphys/docs → pymedphys-0.42.0.dev0/lib/pymedphys/_streamlit}/__init__.py +0 -0
  880. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_streamlit/pymedphys-favicon.png +0 -0
  881. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/_streamlit/pymedphys-title.png +0 -0
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  883. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/coordinates → pymedphys-0.42.0.dev0/lib/pymedphys/_trf}/__init__.py +0 -0
  884. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/delivery → pymedphys-0.42.0.dev0/lib/pymedphys/_utilities}/__init__.py +0 -0
  885. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom → pymedphys-0.42.0.dev0/lib/pymedphys/_vendor}/__init__.py +0 -0
  886. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom/rtplan → pymedphys-0.42.0.dev0/lib/pymedphys/docs}/__init__.py +0 -0
  887. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/index_example.png +0 -0
  888. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/logfile_example.png +0 -0
  889. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/open_with_code.png +0 -0
  890. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/img/sql_example.png +0 -0
  891. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/users/howto/tunnels/img/set-dns.png +0 -0
  892. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/docs/users/howto/tunnels/img/set-ip.png +0 -0
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  894. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/e2e → pymedphys-0.42.0.dev0/lib/pymedphys/tests/cli}/__init__.py +0 -0
  895. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental → pymedphys-0.42.0.dev0/lib/pymedphys/tests/coordinates}/__init__.py +0 -0
  896. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/mapcheck → pymedphys-0.42.0.dev0/lib/pymedphys/tests/data}/__init__.py +0 -0
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  899. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/profiler → pymedphys-0.42.0.dev0/lib/pymedphys/tests/dicom}/__init__.py +0 -0
  900. {pymedphys-0.40.0.dev3 → pymedphys-0.42.0.dev0}/lib/pymedphys/tests/dicom/data/rtplan/06MV_plan.dcm +0 -0
  901. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/pseudonymisation → pymedphys-0.42.0.dev0/lib/pymedphys/tests/dicom/rtplan}/__init__.py +0 -0
  902. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/quickcheck → pymedphys-0.42.0.dev0/lib/pymedphys/tests/dicom/structure}/__init__.py +0 -0
  903. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/gamma → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental}/__init__.py +0 -0
  904. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/icom → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/mapcheck}/__init__.py +0 -0
  905. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/logfiles → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/mephysto}/__init__.py +0 -0
  906. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/dicom/scratch → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/mephysto/data/baselines}/.gitkeep +0 -0
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  908. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/losslessjpeg → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/profiler}/__init__.py +0 -0
  909. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/metersetmap → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/pseudonymisation}/__init__.py +0 -0
  910. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/mocks → pymedphys-0.42.0.dev0/lib/pymedphys/tests/experimental/quickcheck}/__init__.py +0 -0
  911. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/monaco → pymedphys-0.42.0.dev0/lib/pymedphys/tests/gamma}/__init__.py +0 -0
  912. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq → pymedphys-0.42.0.dev0/lib/pymedphys/tests/icom}/__init__.py +0 -0
  913. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/mosaiq/data → pymedphys-0.42.0.dev0/lib/pymedphys/tests/interp}/__init__.py +0 -0
  914. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/pinnacle → pymedphys-0.42.0.dev0/lib/pymedphys/tests/logfiles}/__init__.py +0 -0
  915. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/trf → pymedphys-0.42.0.dev0/lib/pymedphys/tests/logging}/__init__.py +0 -0
  916. {pymedphys-0.40.0.dev3/lib/pymedphys/tests/utilities → pymedphys-0.42.0.dev0/lib/pymedphys/tests/losslessjpeg}/__init__.py +0 -0
  917. /pymedphys-0.40.0.dev3/lib/pymedphys/tests/experimental/mephysto/data/baselines/.gitkeep → /pymedphys-0.42.0.dev0/lib/pymedphys/tests/metersetmap/__init__.py +0 -0
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+ logs
139
+ *.log
140
+ npm-debug.log*
141
+ yarn-debug.log*
142
+ yarn-error.log*
143
+ lerna-debug.log*
144
+
145
+ # Diagnostic reports (https://nodejs.org/api/report.html)
146
+ report.[0-9]*.[0-9]*.[0-9]*.[0-9]*.json
147
+
148
+ # Runtime data
149
+ pids
150
+ *.pid
151
+ *.seed
152
+ *.pid.lock
153
+
154
+ # Directory for instrumented libs generated by jscoverage/JSCover
155
+ lib-cov
156
+
157
+ # Coverage directory used by tools like istanbul
158
+ coverage
159
+ *.lcov
160
+
161
+ # nyc test coverage
162
+ .nyc_output
163
+
164
+ # Grunt intermediate storage (https://gruntjs.com/creating-plugins#storing-task-files)
165
+ .grunt
166
+
167
+ # Bower dependency directory (https://bower.io/)
168
+ bower_components
169
+
170
+ # node-waf configuration
171
+ .lock-wscript
172
+
173
+ # Compiled binary addons (https://nodejs.org/api/addons.html)
174
+ build/Release
175
+
176
+ # Dependency directories
177
+ node_modules/
178
+ jspm_packages/
179
+
180
+ # Snowpack dependency directory (https://snowpack.dev/)
181
+ web_modules/
182
+
183
+ # TypeScript cache
184
+ *.tsbuildinfo
185
+
186
+ # Optional npm cache directory
187
+ .npm
188
+
189
+ # Optional eslint cache
190
+ .eslintcache
191
+
192
+ # Microbundle cache
193
+ .rpt2_cache/
194
+ .rts2_cache_cjs/
195
+ .rts2_cache_es/
196
+ .rts2_cache_umd/
197
+
198
+ # Optional REPL history
199
+ .node_repl_history
200
+
201
+ # Output of 'npm pack'
202
+ *.tgz
203
+
204
+ # Yarn Integrity file
205
+ .yarn-integrity
206
+
207
+ # dotenv environment variables file
208
+ .env
209
+ .env.test
210
+
211
+ # parcel-bundler cache (https://parceljs.org/)
212
+ .cache
213
+ .parcel-cache
214
+
215
+ # Next.js build output
216
+ .next
217
+
218
+ # Nuxt.js build / generate output
219
+ .nuxt
220
+ dist
221
+
222
+ # Gatsby files
223
+ .cache/
224
+ # Comment in the public line in if your project uses Gatsby and not Next.js
225
+ # https://nextjs.org/blog/next-9-1#public-directory-support
226
+ # public
227
+
228
+ # vuepress build output
229
+ .vuepress/dist
230
+
231
+ # Serverless directories
232
+ .serverless/
233
+
234
+ # FuseBox cache
235
+ .fusebox/
236
+
237
+ # DynamoDB Local files
238
+ .dynamodb/
239
+
240
+ # TernJS port file
241
+ .tern-port
242
+
243
+ # Stores VSCode versions used for testing VSCode extensions
244
+ .vscode-test
245
+
246
+ # yarn v2
247
+
248
+ .yarn/cache
249
+ .yarn/unplugged
250
+ .yarn/build-state.yml
251
+ .pnp.*
252
+
253
+
254
+
255
+ ##############################################################################
256
+ ### CUSTOM ###
257
+ ##############################################################################
258
+
259
+ .~lock*
260
+
261
+ # IDE configuration
262
+ .idea/
263
+ .vscode/*
264
+ !.vscode/settings.json
265
+ !.vscode/extensions.json
266
+
267
+ # Test results
268
+ junit/
269
+
270
+ # Allow for ignoring by prepending scratch-
271
+ scratch-*
272
+
273
+ # USER DEFINED
274
+ *.pdf
275
+
276
+ v*.tar.gz
277
+
278
+ *.py.*.py
279
+ *.exe
280
+
281
+ *-demo
282
+ *-demo-files
283
+ downloads/
284
+ offline/
285
+ .history/
286
+ scratch/
287
+
288
+ .devcontainer/*
289
+ .venv*
290
+ .DS_Store