pymdkit 1.2.9__tar.gz → 1.2.10__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pymdkit-1.2.9/src/pymdkit.egg-info → pymdkit-1.2.10}/PKG-INFO +1 -1
- {pymdkit-1.2.9 → pymdkit-1.2.10}/pyproject.toml +1 -1
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/__init__.py +1 -1
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/stable_entry.py +21 -9
- {pymdkit-1.2.9 → pymdkit-1.2.10/src/pymdkit.egg-info}/PKG-INFO +1 -1
- {pymdkit-1.2.9 → pymdkit-1.2.10}/LICENSE +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/README.md +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/setup.cfg +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/__init__.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/_fileio.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/_vasp_output.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/_vaspset.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/add_groups.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/compute_ehull.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/compute_msd_all_groups.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/compute_rmsd.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/electrostatic_energy.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/final_energy.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/gather_contcar.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/nep_rmse.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/perturb.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/stru2xyz.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/submit_vasp.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/substitute.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/supercell.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/symmetrize.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/vasp2xyz.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/vasp_relax.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/commands/vasp_static.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit/pymdkit_main.py +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit.egg-info/SOURCES.txt +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit.egg-info/dependency_links.txt +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit.egg-info/entry_points.txt +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit.egg-info/requires.txt +0 -0
- {pymdkit-1.2.9 → pymdkit-1.2.10}/src/pymdkit.egg-info/top_level.txt +0 -0
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@@ -99,20 +99,28 @@ def resolve_public_material_ids(entries, api_key=None):
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is_stable=True,
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fields=["material_id", "formula_pretty", "structure"],
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)
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+
candidates = []
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for doc in cache[formula]:
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structure = doc_get(doc, "structure")
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material_id = mpid_text(doc_get(doc, "material_id"))
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if not structure or not is_public_mpid(material_id):
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continue
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if str(structure.composition.reduced_formula)
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if str(structure.composition.reduced_formula) == formula:
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candidates.append((doc, structure, material_id))
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chosen = None
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if len(candidates) == 1:
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chosen = candidates[0][2]
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else:
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for _, structure, material_id in candidates:
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if matcher.fit(entry.structure, structure):
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chosen = material_id
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break
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if chosen:
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data = getattr(entry, "data", None)
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if data is None:
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entry.data = {}
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data = entry.data
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data["material_id"] = chosen
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def fetch_stable_entries(elements, api_key=None):
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@@ -184,6 +192,10 @@ def download_mp_symmetrized_cif(material_id, path, api_key=None):
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headers["X-API-KEY"] = key
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quoted = quote(material_id, safe="")
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urls = [
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f"https://api.materialsproject.org/materials/{quoted}/cif?symmetrized=true",
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f"https://api.materialsproject.org/materials/{quoted}/cif",
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f"https://api.materialsproject.org/materials/core/{quoted}/cif?symmetrized=true",
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f"https://api.materialsproject.org/materials/core/{quoted}/cif",
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f"https://materialsproject.org/materials/{quoted}/cif?download=true&symmetrized=true",
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f"https://materialsproject.org/materials/{quoted}/cif?symmetrized=true",
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f"https://www.materialsproject.org/rest/v2/materials/{quoted}/cif",
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