pylmrob 0.5.13__tar.gz

pylmrob-0.5.13/.github/workflows/ci.yml

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+name: CI
+
+on:
+  push:
+    branches: [main]
+  pull_request:
+    branches: [main]
+
+# Cancel in-progress runs of the same workflow on the same ref.
+concurrency:
+  group: ${{ github.workflow }}-${{ github.ref }}
+  cancel-in-progress: true
+
+jobs:
+  lint:
+    name: Lint + type check
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+          cache: "pip"
+      - name: Install project + lint deps
+        # Install the project (so ty sees numpy/scipy/pandas/formulaic in
+        # the same env) plus ruff and ty.
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install ".[dev]" ruff ty
+      - name: Ruff
+        run: ruff check src tests
+      - name: Ruff format check
+        run: ruff format --check src tests
+      - name: ty (type check)
+        # Astral's ty is the project's standard type checker (replaces mypy).
+        run: ty check src/pylmrob
+
+  test:
+    name: Tests (${{ matrix.os }} / py${{ matrix.python-version }})
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        os: [ubuntu-latest, macos-latest, windows-latest]
+        python-version: ["3.10", "3.11", "3.12", "3.13"]
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: actions/setup-python@v5
+        with:
+          python-version: ${{ matrix.python-version }}
+          cache: "pip"
+
+      # ------------------------------------------------------------------
+      # R + robustbase. We only run rpy2-backed tests on Linux to keep CI
+      # cheap; correctness against the JSON references is platform-agnostic.
+      # ------------------------------------------------------------------
+      - name: Install R (Linux)
+        if: runner.os == 'Linux'
+        uses: r-lib/actions/setup-r@v2
+        with:
+          r-version: "release"
+          use-public-rspm: true
+
+      - name: Cache R packages (Linux)
+        if: runner.os == 'Linux'
+        uses: actions/cache@v4
+        with:
+          path: ${{ env.R_LIBS_USER }}
+          key: r-${{ runner.os }}-robustbase-${{ hashFiles('scripts/generate_r_reference.R') }}
+
+      - name: Install robustbase (Linux)
+        if: runner.os == 'Linux'
+        run: Rscript -e 'install.packages(c("robustbase","jsonlite"), repos="https://cloud.r-project.org")'
+
+      - name: Install OpenMP runtime (macOS)
+        if: runner.os == 'macOS'
+        run: |
+          brew install libomp
+          echo "LDFLAGS=-L$(brew --prefix libomp)/lib"   >> $GITHUB_ENV
+          echo "CPPFLAGS=-I$(brew --prefix libomp)/include" >> $GITHUB_ENV
+
+      - name: Install build deps + project (no rpy2)
+        # Non-editable install: lets meson-python's build-isolation handle
+        # Cython/meson/ninja without us tracking them. Editable mode would
+        # require keeping the build env around for the rebuild-on-import
+        # loop, which is more brittle on CI.
+        run: |
+          python -m pip install --upgrade pip
+          python -m pip install -v ".[dev]"
+
+      # rpy2 is only needed for the live R-bridge tests, which we skip on
+      # macOS/Windows. Installing it elsewhere fails because the build
+      # requires R to be on PATH.
+      - name: Install rpy2 (Linux only)
+        if: runner.os == 'Linux'
+        run: python -m pip install ".[validation]"
+
+      - name: Generate R reference (Linux only)
+        if: runner.os == 'Linux'
+        run: Rscript scripts/generate_r_reference.R
+
+      - name: Run pytest
+        env:
+          PYROBUSTLM_SKIP_RPY2: ${{ runner.os != 'Linux' && '1' || '' }}
+        run: pytest -v --maxfail=10

pylmrob-0.5.13/.github/workflows/wheels.yml

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+name: Build wheels
+
+# Manual trigger only for the first release; once we've confirmed that
+# wheels build and ``pip install pylmrob`` works from TestPyPI, flip
+# to ``push: tags: ["v*"]`` so tagging publishes to real PyPI
+# automatically.
+on:
+  workflow_dispatch:
+    inputs:
+      target:
+        description: "Publish target"
+        required: true
+        default: "testpypi"
+        type: choice
+        options:
+          - testpypi
+          - pypi
+          - none
+
+jobs:
+  build_wheels:
+    name: ${{ matrix.os }} ${{ matrix.arch }}
+    runs-on: ${{ matrix.os }}
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - os: ubuntu-latest
+            arch: x86_64
+          - os: ubuntu-latest
+            arch: aarch64
+          # macos-13 (Intel) dropped: the free runner queue is unusable
+          # in 2026 (5+ hour waits) as GitHub winds down Intel mac
+          # capacity. Apple Silicon covers all Macs sold since late
+          # 2020; Intel users can install from the sdist.
+          - os: macos-14           # Apple Silicon runner
+            arch: arm64
+          - os: windows-latest
+            arch: AMD64
+    steps:
+      - uses: actions/checkout@v4
+
+      - name: Set up QEMU (linux aarch64)
+        if: matrix.os == 'ubuntu-latest' && matrix.arch == 'aarch64'
+        uses: docker/setup-qemu-action@v3
+        with:
+          platforms: arm64
+
+      - name: Build wheels
+        uses: pypa/cibuildwheel@v2.21
+        env:
+          CIBW_ARCHS: ${{ matrix.arch }}
+
+      - uses: actions/upload-artifact@v4
+        with:
+          name: wheels-${{ matrix.os }}-${{ matrix.arch }}
+          path: ./wheelhouse/*.whl
+
+  build_sdist:
+    name: Build sdist
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - run: |
+          python -m pip install --upgrade pip build
+          python -m build --sdist
+      - uses: actions/upload-artifact@v4
+        with:
+          name: sdist
+          path: dist/*.tar.gz
+
+  publish_testpypi:
+    name: Publish to TestPyPI
+    needs: [build_wheels, build_sdist]
+    runs-on: ubuntu-latest
+    if: inputs.target == 'testpypi'
+    environment:
+      name: testpypi
+      url: https://test.pypi.org/p/pylmrob
+    permissions:
+      id-token: write   # OIDC trusted publisher
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          path: dist
+          merge-multiple: true
+      - uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          repository-url: https://test.pypi.org/legacy/
+
+  publish:
+    name: Publish to PyPI
+    needs: [build_wheels, build_sdist]
+    runs-on: ubuntu-latest
+    if: inputs.target == 'pypi' || startsWith(github.ref, 'refs/tags/v')
+    environment:
+      name: pypi
+      url: https://pypi.org/p/pylmrob
+    permissions:
+      id-token: write   # OIDC trusted publisher
+    steps:
+      - uses: actions/download-artifact@v4
+        with:
+          path: dist
+          merge-multiple: true
+      - uses: pypa/gh-action-pypi-publish@release/v1

pylmrob-0.5.13/.gitignore

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+# Build artifacts
+build/
+builddir/
+dist/
+*.egg-info/
+*.egg
+__pycache__/
+*.py[cod]
+*.so
+*.dylib
+*.pyd
+*.dll
+
+# Cython generated
+src/pylmrob/_core/*.c
+src/pylmrob/_core/*.cpp
+src/pylmrob/_core/*.html
+
+# Environments
+.venv/
+venv/
+.env
+.python-version
+
+# Tooling caches
+.pytest_cache/
+.mypy_cache/
+.ruff_cache/
+.hypothesis/
+.coverage
+.coverage.*
+htmlcov/
+coverage.xml
+.tox/
+
+# IDE / editor
+.idea/
+.vscode/
+*.swp
+*~
+\#*\#
+.DS_Store
+
+# Generated docs
+docs/_build/
+docs/_static/
+docs/api/_autosummary/
+
+# R reference outputs (regenerated on demand; small ones may be committed under tests/reference/)
+scripts/_rcache/
+
+# Test scratch (regenerated by tests/unit/test_d_scale.py)
+tests/data/_d_test_*.csv
+
+# Local-only
+local/
+scratch/
+uv.lock

pylmrob-0.5.13/.pre-commit-config.yaml

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+repos:
+  - repo: https://github.com/pre-commit/pre-commit-hooks
+    rev: v4.6.0
+    hooks:
+      - id: trailing-whitespace
+      - id: end-of-file-fixer
+      - id: check-yaml
+      - id: check-toml
+      - id: check-merge-conflict
+      - id: check-added-large-files
+        args: ["--maxkb=500"]
+
+  - repo: https://github.com/astral-sh/ruff-pre-commit
+    rev: v0.6.9
+    hooks:
+      - id: ruff
+        args: ["--fix"]
+      - id: ruff-format
+
+  # ty is run in CI via `uvx ty check`. Adding it here as a local hook so
+  # it runs against the project venv (which has the compiled extension
+  # available, unlike isolated pre-commit envs).
+  - repo: local
+    hooks:
+      - id: ty
+        name: ty (type check)
+        entry: uvx ty check
+        language: system
+        pass_filenames: false
+        files: ^src/pylmrob/.*\.py$
+
+  - repo: https://github.com/compilerla/conventional-pre-commit
+    rev: v3.4.0
+    hooks:
+      - id: conventional-pre-commit
+        stages: [commit-msg]
+        args: []

pylmrob-0.5.13/.readthedocs.yaml

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+# SPDX-License-Identifier: GPL-3.0-or-later
+# Read the Docs config for pylmrob. Build the Sphinx site from docs/.
+
+version: 2
+
+build:
+  os: ubuntu-22.04
+  tools:
+    python: "3.11"
+  apt_packages:
+    - libopenblas-dev
+    - liblapack-dev
+  jobs:
+    # meson-python needs the package built before Sphinx can autodoc it.
+    # Install the build chain explicitly so --no-build-isolation works.
+    post_install:
+      - pip install "meson-python>=0.16" "meson>=1.4" ninja "Cython>=3" "numpy>=2"
+      - pip install -e ".[docs]" --no-build-isolation
+
+sphinx:
+  configuration: docs/conf.py
+  builder: html
+  fail_on_warning: true
+
+# Don't ship epub/pdf builders; HTML only.
+formats: []