pyisyntax 0.1.5__tar.gz → 0.1.7__tar.gz

{pyisyntax-0.1.5/pyisyntax.egg-info → pyisyntax-0.1.7}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyisyntax
-Version: 0.1.5
+Version: 0.1.7
 Summary: Python bindings for libisyntax
 Author-email: Aiden Nibali <dismaldenizen@gmail.com>
 License-Expression: MIT
@@ -79,3 +79,21 @@ To modify pyisyntax project dependencies:
    ```console
    $ uv lock
    ```
+
+### Cutting a new release
+
+1. Ensure that tests are passing and everything is ready for release.
+2. Create and push a Git tag:
+   ```console
+   $ git tag v0.1.6
+   $ git push --tags
+   ```
+3. Download the artifacts from GitHub Actions, which will include the source distribution tarball and binary wheels.
+4. Create a new release on GitHub from the tagged commit and upload the packages as attachments to the release.
+5. Also upload the packages to PyPI using Twine:
+   ```console
+   $ uv run twine upload pyisyntax-*.tar.gz pyisyntax-*.whl
+   ```
+6. Bump the version number in `pyproject.toml` and create a commit, signalling the start of development on the next version.
+
+These files should also be added to a GitHub release.

{pyisyntax-0.1.5 → pyisyntax-0.1.7}/README.md

@@ -61,3 +61,21 @@ To modify pyisyntax project dependencies:
    ```console
    $ uv lock
    ```
+
+### Cutting a new release
+
+1. Ensure that tests are passing and everything is ready for release.
+2. Create and push a Git tag:
+   ```console
+   $ git tag v0.1.6
+   $ git push --tags
+   ```
+3. Download the artifacts from GitHub Actions, which will include the source distribution tarball and binary wheels.
+4. Create a new release on GitHub from the tagged commit and upload the packages as attachments to the release.
+5. Also upload the packages to PyPI using Twine:
+   ```console
+   $ uv run twine upload pyisyntax-*.tar.gz pyisyntax-*.whl
+   ```
+6. Bump the version number in `pyproject.toml` and create a commit, signalling the start of development on the next version.
+
+These files should also be added to a GitHub release.

pyisyntax-0.1.7/isyntax/_pyisyntax.pyi

@@ -0,0 +1,4 @@
+from typing import Any
+
+ffi: Any
+lib: Any

{pyisyntax-0.1.5 → pyisyntax-0.1.7}/isyntax_build/builder.py

@@ -1,4 +1,5 @@
 import os
+import platform
 from importlib import resources
 from pathlib import Path
 
@@ -41,6 +42,19 @@ def create_ffibuilder() -> FFI:
         platform_sources = []
         extra_compile_args = []
         libraries = []
+        # The vendored libisyntax guards its SIMD/atomics on x86-centric macros
+        # that GCC does not define on aarch64 Linux, so the arm build otherwise
+        # fails to compile / links x86-only intrinsics. Select the correct paths:
+        #   __ARM_NEON__ -> intrinsics.h includes <arm_neon.h> for the NEON code
+        #   __arm64      -> ltalloc spin-wait uses sched_yield, not x86 `pause`
+        #   the last two map x86-only bit intrinsics onto portable GCC builtins
+        if platform.machine() in ("aarch64", "arm64"):
+            extra_compile_args += [
+                "-D__ARM_NEON__=1",
+                "-D__arm64=1",
+                "-D_bit_scan_forward=__builtin_ctz",
+                "-D_popcnt32=__builtin_popcount",
+            ]
 
     ffibuilder.set_source(
         "isyntax._pyisyntax",
@@ -51,7 +65,7 @@ def create_ffibuilder() -> FFI:
             libisyntax_src / "isyntax" / "isyntax_reader.c",
             libisyntax_src / "utils" / "timerutils.c",
             libisyntax_src / "utils" / "block_allocator.c",
-            libisyntax_src / "utils" / "benaphore.c",
+            libisyntax_src / "platform" / "platform_mutex.c",
             libisyntax_src / "platform" / "platform.c",
             libisyntax_src / "platform" / "work_queue.c",
             libisyntax_src / "third_party" / "yxml.c",

{pyisyntax-0.1.5 → pyisyntax-0.1.7}/isyntax_build/vendor/libisyntax/src/examples/isyntax_dirwalk.c

@@ -5,7 +5,8 @@
 #include <dirent.h>
 #include <sys/stat.h>
 #include <sys/types.h>
-#include <malloc.h>
+#include <stdlib.h>
+#include <string.h>
 
 
 #define CHECK_LIBISYNTAX_OK(_libisyntax_call) do { \
@@ -19,7 +20,7 @@
 #ifdef _WIN32
 #define PATH_SEP "\\"
 #else
-#define PATH_SEP "/";
+#define PATH_SEP "/"
 #endif
 
 // This program loops through all the .isyntax files in a folder (including subfolders),

{pyisyntax-0.1.5 → pyisyntax-0.1.7}/isyntax_build/vendor/libisyntax/src/examples/isyntax_example.c

@@ -16,14 +16,36 @@
 
 void print_isyntax_levels(isyntax_t* isyntax) {
     const isyntax_image_t* wsi_image = libisyntax_get_wsi_image(isyntax);
+    LOG_VAR("%s", libisyntax_get_acquisition_datetime(isyntax));
+    LOG_VAR("%s", libisyntax_get_manufacturer(isyntax));
+    LOG_VAR("%s", libisyntax_get_manufacturers_model_name(isyntax));
+    LOG_VAR("%s", libisyntax_get_derivation_description(isyntax));
+    LOG_VAR("%s", libisyntax_get_device_serial_number(isyntax));
+    for (int i = 0; i < libisyntax_get_software_versions_count(isyntax); ++i) {
+        LOG_VAR("%d", i);
+        LOG_VAR("%s", libisyntax_get_software_versions(isyntax, i));
+    }
+    for (int i = 0; i < libisyntax_get_date_of_last_calibration_count(isyntax); ++i) {
+        LOG_VAR("%d", i);
+        LOG_VAR("%s", libisyntax_get_date_of_last_calibration(isyntax, i));
+    }
+    for (int i = 0; i < libisyntax_get_time_of_last_calibration_count(isyntax); ++i) {
+        LOG_VAR("%d", i);
+        LOG_VAR("%s", libisyntax_get_time_of_last_calibration(isyntax, i));
+    }
 
+    LOG_VAR("%d", libisyntax_is_lossy_image_compression(isyntax));
+    LOG_VAR("%f", libisyntax_get_lossy_image_compression_ratio(isyntax));
+    LOG_VAR("%s", libisyntax_get_lossy_image_compression_method(isyntax));
     for (int i = 0; i < libisyntax_image_get_level_count(wsi_image); ++i) {
         const isyntax_level_t* level = libisyntax_image_get_level(wsi_image, i);
         LOG_VAR("%d", i);
         LOG_VAR("%d", libisyntax_level_get_scale(level));
         LOG_VAR("%d", libisyntax_level_get_width_in_tiles(level));
         LOG_VAR("%d", libisyntax_level_get_height_in_tiles(level));
+        LOG_VAR("%f", libisyntax_level_get_mpp_x(level));
     }
+    LOG_VAR("%s", libisyntax_scale_unit(isyntax));
 }
 
 int main(int argc, char** argv) {

{pyisyntax-0.1.5 → pyisyntax-0.1.7}/isyntax_build/vendor/libisyntax/src/examples/isyntax_to_tiff.c

@@ -51,7 +51,7 @@
 #elif defined(__GNUC__) && (defined(__x86_64__) || defined(__i386__))
 /* GCC-compatible compiler, targeting x86/x86-64 */
 #include <x86intrin.h>
-#elif defined(__GNUC__) && defined(__ARM_NEON__)
+#elif defined(__GNUC__) && (defined(__ARM_NEON__) || defined(__ARM_NEON))
 /* GCC-compatible compiler, targeting ARM with NEON */
 #include <arm_neon.h>
 #elif defined(__GNUC__) && defined(__IWMMXT__)