pyhdf5-handler 0.8__tar.gz → 0.9__tar.gz

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/.spyproject/config/backups/workspace.ini.bak

@@ -4,7 +4,7 @@ save_data_on_exit = True
 save_history = True
 save_non_project_files = False
 project_type = 'empty-project-type'
-recent_files = ['pyhdf5_handler/src/hdf5_handler.py', 'pyhdf5_handler/src/object_handler.py', 'pyhdf5_handler/tutorial/hdf5_io_tests.py', 'pyhdf5_handler/tutorial/complementary_test.py', 'test_fichier_julie.py']
+recent_files = ['pyhdf5_handler/src/hdf5_handler.py', 'pyhdf5_handler/src/object_handler.py', 'pyhdf5_handler/tutorial/hdf5_io_tests.py', 'pyhdf5_handler/tutorial/complementary_test.py']
 
 [main]
 version = 0.2.0

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/.spyproject/config/workspace.ini

@@ -4,7 +4,7 @@ save_data_on_exit = True
 save_history = True
 save_non_project_files = False
 project_type = 'empty-project-type'
-recent_files = ['pyhdf5_handler/src/hdf5_handler.py', 'pyhdf5_handler/src/object_handler.py', 'pyhdf5_handler/tutorial/hdf5_io_tests.py', 'pyhdf5_handler/tutorial/complementary_test.py', 'test_fichier_julie.py']
+recent_files = ['pyhdf5_handler/src/hdf5_handler.py', 'pyhdf5_handler/src/object_handler.py', 'pyhdf5_handler/tutorial/hdf5_io_tests.py', 'pyhdf5_handler/tutorial/complementary_test.py']
 
 [main]
 version = 0.2.0

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pyhdf5_handler
-Version: 0.8
+Version: 0.9
 Summary: A Python library to read and write data to HDF5 format. This library is based on the h5py (https://docs.h5py.org/en/stable/index.html) and has been developed by Maxime Jay-Allemand at Hydris hydrologie (https://www.hydris-hydrologie.fr/)
 Project-URL: Homepage, https://codeberg.org/maximejay/pyhdf5_handler
 Project-URL: Issues, https://codeberg.org/maximejay/pyhdf5_handler/issues

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/Release_note.txt

@@ -1,3 +1,6 @@
+v0.9 : 23-07-2026
+- fix: handle dtype with panda dataframe: read/write
+
 v0.8 : 19-06-2026
 - relase 0.8
 - Add support for pd.DataFrame()

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/pyhdf5_handler/src/hdf5_handler.py

@@ -416,6 +416,13 @@ def _hdf5_handle_PandaDataFrame(
     dataset = _hdf5_handle_array("array", value.to_numpy())
     _hdf5_create_dataset(hdf5_data, dataset)
 
+    dtype = []
+    for col in value.columns:
+        dtype.append(value[col].dtype.name)
+
+    dataset = _hdf5_handle_list("dtype", dtype)
+    _hdf5_create_dataset(hdf5_data, dataset)
+
     return
 
 
@@ -658,10 +665,11 @@ def _read_pd_dataframe(hdf5):
     if "pd_DataFrame" in list(hdf5.keys()):
         columns = hdf5["pd_DataFrame/columns"][:]
         array = hdf5["pd_DataFrame/array"][:]
+        dtype = hdf5["pd_DataFrame/dtype"][:]
 
     newdict = {}
     for i, col in enumerate(columns):
-        newdict.update({col.decode(): array[:, i]})
+        newdict.update({col.decode(): array[:, i].astype(dtype[i])})
 
     return pd.DataFrame(newdict)
 

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/pyhdf5_handler/tutorial/hdf5_io_tests.py

@@ -74,6 +74,21 @@ if __name__ == "__main__":
             {"column1": np.array([1, 2, 3]), "column2": np.array([4, 5, 6])}
         ),
     )
+    pyhdf5_handler.hdf5_dataset_creator(
+        hdf5,
+        "mix_dtype_panda_dataframe",
+        pd.DataFrame(
+            {
+                "column1": np.array(["A", "B", "C"]),
+                "column2": np.array([4, 5, 6]),
+            }
+        ),
+    )
+    pyhdf5_handler.hdf5_dataset_creator(
+        hdf5,
+        "empty_dataframe",
+        pd.DataFrame({}),
+    )
 
     # write a python dictionary in the hdf5 database
     dictionary = {
@@ -86,6 +101,12 @@ if __name__ == "__main__":
             "array": np.array([1, 2, 3, 4]),
             "date_range": pd.date_range(start="1/1/2018", end="1/08/2018"),
             "list_mixte": [1.0, np.datetime64("2019-09-22 17:38:30")],
+            "pandas_df": pd.DataFrame(
+                {
+                    "column1": np.array([1, 2, 3]),
+                    "column2": np.array([4, 5, 6]),
+                }
+            ),
         }
     }
 
@@ -130,6 +151,10 @@ if __name__ == "__main__":
         hdf5_instance=hdf5,
         location="./panda_dataframe",
     )
+    pyhdf5_handler.get_hdf5_item(
+        hdf5_instance=hdf5,
+        location="./mix_dtype_panda_dataframe",
+    )
     pyhdf5_handler.get_hdf5_item(
         hdf5_instance=hdf5,
         location="./structured_array",
@@ -146,6 +171,11 @@ if __name__ == "__main__":
         "./test.hdf5", read_attrs=False
     )
 
+    pyhdf5_handler.get_hdf5file_item(
+        path_to_hdf5="./test.hdf5",
+        location="./mix_dtype_panda_dataframe",
+    )
+
     pyhdf5_handler.save_dict_to_hdf5file("./test.hdf5", data)
 
     # complex class with exluded datatype

{pyhdf5_handler-0.8 → pyhdf5_handler-0.9}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "hatchling.build"
 
 [project]
 name = "pyhdf5_handler"
-version = "0.8"
+version = "0.9"
 authors = [
   { name="Maxime Jay-Allemand", email="maxime.jay.allemand@hydris-hydrologie.fr" },
 ]