pygeoinf 1.2.9__tar.gz → 1.3.0__tar.gz

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/PKG-INFO

@@ -1,8 +1,9 @@
-Metadata-Version: 2.3
+Metadata-Version: 2.4
 Name: pygeoinf
-Version: 1.2.9
+Version: 1.3.0
 Summary: A package for solving geophysical inference and inverse problems
 License: BSD-3-Clause
+License-File: LICENSE
 Author: David Al-Attar and Dan Heathcote
 Requires-Python: >=3.11
 Classifier: License :: OSI Approved :: BSD License
@@ -10,6 +11,7 @@ Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.11
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Provides-Extra: sphere
 Requires-Dist: joblib (>=1.5.2,<2.0.0)
 Requires-Dist: matplotlib (>=3.0.0)

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/__init__.py

@@ -85,3 +85,70 @@ from .backus_gilbert import HyperEllipsoid
 from .nonlinear_optimisation import (
     ScipyUnconstrainedOptimiser,
 )
+
+
+__all__ = [
+    # random_matrix
+    "fixed_rank_random_range",
+    "variable_rank_random_range",
+    "random_range",
+    "random_svd",
+    "random_eig",
+    "random_cholesky",
+    "random_diagonal",
+    # hilbert_space
+    "HilbertSpace",
+    "DualHilbertSpace",
+    "EuclideanSpace",
+    "HilbertModule",
+    "MassWeightedHilbertSpace",
+    "MassWeightedHilbertModule",
+    # nonlinear_forms
+    "NonLinearForm",
+    # linear_forms
+    "LinearForm",
+    # nonlinear_operators
+    "NonLinearOperator",
+    # linear_operators
+    "LinearOperator",
+    "MatrixLinearOperator",
+    "DenseMatrixLinearOperator",
+    "SparseMatrixLinearOperator",
+    "DiagonalSparseMatrixLinearOperator",
+    "NormalSumOperator",
+    # gaussian_measure
+    "GaussianMeasure",
+    # direct_sum
+    "HilbertSpaceDirectSum",
+    "BlockStructure",
+    "BlockLinearOperator",
+    "ColumnLinearOperator",
+    "RowLinearOperator",
+    "BlockDiagonalLinearOperator",
+    # linear_solvers
+    "LinearSolver",
+    "DirectLinearSolver",
+    "LUSolver",
+    "CholeskySolver",
+    "EigenSolver",
+    "IterativeLinearSolver",
+    "ScipyIterativeSolver",
+    "CGMatrixSolver",
+    "BICGMatrixSolver",
+    "BICGStabMatrixSolver",
+    "GMRESMatrixSolver",
+    "CGSolver",
+    # forward_problem
+    "ForwardProblem",
+    "LinearForwardProblem",
+    # linear_optimisation
+    "LinearLeastSquaresInversion",
+    "LinearMinimumNormInversion",
+    # linear_bayesian
+    "LinearBayesianInversion",
+    "LinearBayesianInference",
+    # backus_gilbert
+    "HyperEllipsoid",
+    # nonlinear_optimisation
+    "ScipyUnconstrainedOptimiser",
+]

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/backus_gilbert.py

@@ -8,8 +8,6 @@ from .hilbert_space import HilbertSpace, Vector
 from .linear_operators import LinearOperator
 from .nonlinear_forms import NonLinearForm
 
-from .forward_problem import LinearForwardProblem
-from .inversion import LinearInference
 
 
 class HyperEllipsoid:

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/checks/nonlinear_operators.py

@@ -7,7 +7,7 @@ from typing import TYPE_CHECKING
 import numpy as np
 
 if TYPE_CHECKING:
-    from ..linear_operators import LinearOperator
+    pass
 
 
 class NonLinearOperatorAxiomChecks:

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/direct_sum.py

@@ -26,12 +26,10 @@ from abc import ABC, abstractmethod
 from typing import List, Any
 import numpy as np
 from scipy.linalg import block_diag
-from joblib import Parallel, delayed
 
 from .hilbert_space import HilbertSpace
 from .linear_operators import LinearOperator
 from .linear_forms import LinearForm
-from .parallel import parallel_compute_dense_matrix_from_scipy_op
 
 
 class HilbertSpaceDirectSum(HilbertSpace):

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/gaussian_measure.py

@@ -20,7 +20,7 @@ Key Features
 """
 
 from __future__ import annotations
-from typing import Callable, Optional, Any, List, TypeVar, TYPE_CHECKING
+from typing import Callable, Optional, Any, List, TYPE_CHECKING
 
 import numpy as np
 from scipy.linalg import eigh
@@ -40,6 +40,12 @@ from .direct_sum import (
 )
 
 
+# This block is only processed by type checkers, not at runtime.
+if TYPE_CHECKING:
+    from .hilbert_space import HilbertSpace
+    from .typing import Vector
+
+
 class GaussianMeasure:
     """
     Represents a Gaussian measure on a Hilbert space.

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/linear_forms.py

@@ -18,7 +18,7 @@ from .nonlinear_forms import NonLinearForm
 
 # This block only runs for type checkers, not at runtime
 if TYPE_CHECKING:
-    from .hilbert_space import HilbertSpace, EuclideanSpace, Vector
+    from .hilbert_space import HilbertSpace, Vector
     from .linear_operators import LinearOperator
 
 

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/linear_operators.py

@@ -25,7 +25,6 @@ from collections import defaultdict
 import numpy as np
 import scipy.sparse as sp
 from scipy.sparse.linalg import LinearOperator as ScipyLinOp
-from scipy.sparse import diags
 
 
 from joblib import Parallel, delayed
@@ -46,7 +45,7 @@ from .checks.linear_operators import LinearOperatorAxiomChecks
 
 # This block only runs for type checkers, not at runtime
 if TYPE_CHECKING:
-    from .hilbert_space import HilbertSpace, EuclideanSpace
+    from .hilbert_space import HilbertSpace
     from .linear_forms import LinearForm
 
 

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/nonlinear_forms.py

@@ -16,7 +16,6 @@ if TYPE_CHECKING:
     from .hilbert_space import HilbertSpace, Vector
     from .linear_forms import LinearForm
     from .linear_operators import LinearOperator
-    from .nonlinear_operators import NonLinearOperator
 
 
 class NonLinearForm:

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/nonlinear_operators.py

@@ -8,7 +8,7 @@ algebraic operations and an interface for the Frécher derivative.
 """
 
 from __future__ import annotations
-from typing import Callable, Optional, Any, TYPE_CHECKING
+from typing import Callable, Any, TYPE_CHECKING
 
 
 from .checks.nonlinear_operators import NonLinearOperatorAxiomChecks
@@ -16,7 +16,7 @@ from .checks.nonlinear_operators import NonLinearOperatorAxiomChecks
 
 # This block only runs for type checkers, not at runtime
 if TYPE_CHECKING:
-    from .hilbert_space import HilbertSpace, EuclideanSpace, Vector
+    from .hilbert_space import HilbertSpace, Vector
     from .linear_operators import LinearOperator
 
 

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/symmetric_space/sphere.py

@@ -605,7 +605,9 @@ class Sobolev(SphereHelper, MassWeightedHilbertModule, AbstractInvariantSobolevS
         summation = 1.0
         l = 0
         err = 1.0
-        sobolev_func = lambda deg: (1.0 + scale**2 * deg * (deg + 1)) ** order
+
+        def sobolev_func(deg):
+            return (1.0 + scale**2 * deg * (deg + 1)) ** order
 
         while err > rtol:
             l += 1

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pygeoinf/symmetric_space/symmetric_space.py

@@ -35,7 +35,7 @@ from typing import Callable, Any, List
 import numpy as np
 from scipy.sparse import diags
 
-from pygeoinf.hilbert_space import EuclideanSpace, HilbertSpace
+from pygeoinf.hilbert_space import EuclideanSpace
 from pygeoinf.linear_operators import LinearOperator
 from pygeoinf.linear_forms import LinearForm
 from pygeoinf.gaussian_measure import GaussianMeasure

{pygeoinf-1.2.9 → pygeoinf-1.3.0}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pygeoinf"
-version = "1.2.9"
+version = "1.3.0"
 description = "A package for solving geophysical inference and inverse problems"
 authors = ["David Al-Attar and Dan Heathcote"]
 readme = "README.md"
@@ -30,7 +30,20 @@ sphinx = "<8.2"
 nbsphinx = "^0.9.7"
 pyshtools = ">=4.0.0"
 Cartopy = "^0.23.0"
+ruff = "^0.5.5"
 
 [build-system]
 requires = ["poetry-core"]
 build-backend = "poetry.core.masonry.api"
+
+
+# --- Added Ruff Configuration ---
+[tool.ruff]
+
+[tool.ruff.lint.per-file-ignores]
+# For any file in the "tests/" directory, ignore the lambda assignment warning (E731).
+"tests/*" = ["E731", "E741"]
+
+# For the sphere.py file, where 'l' is a common variable name for spherical
+# harmonic degree, ignore the ambiguous variable name warning (E741).
+"pygeoinf/symmetric_space/sphere.py" = ["E741"]