pydna 5.5.0__tar.gz → 5.5.1__tar.gz

{pydna-5.5.0 → pydna-5.5.1}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pydna
-Version: 5.5.0
+Version: 5.5.1
 Summary: Representing double stranded DNA and functions for simulating cloning and homologous recombination between DNA molecules.
 License: BSD
 Author: Björn F. Johansson
@@ -24,11 +24,12 @@ Provides-Extra: download
 Provides-Extra: express
 Provides-Extra: gel
 Requires-Dist: appdirs (>=1.4.4)
-Requires-Dist: biopython (>=1.80)
+Requires-Dist: biopython (>=1.85)
 Requires-Dist: cai2 (>=1.0.5) ; extra == "express"
 Requires-Dist: matplotlib (>=3.4.3) ; extra == "gel"
 Requires-Dist: networkx (>=2.8.8)
-Requires-Dist: numpy (>1.26)
+Requires-Dist: numpy (>1.26) ; python_version < "3.12"
+Requires-Dist: numpy (>=2.3.0) ; python_version >= "3.12"
 Requires-Dist: pillow (>=8.4.0) ; extra == "gel"
 Requires-Dist: prettytable (>=3.5.0)
 Requires-Dist: pydivsufsort (>=0.0.14)
@@ -45,7 +46,7 @@ Project-URL: Homepage, https://github.com/pydna-group/pydna#-pydna
 Project-URL: Repository, https://github.com/pydna-group/pydna/tree/master
 Description-Content-Type: text/markdown
 
-# ![icon](docs/_static/pydna.resized.png) pydna
+# ![icon](https://github.com/pydna-group/pydna/blob/master/docs/_static/pydna.resized.png?raw=true) pydna
 
 | [![Tests & Coverage](https://github.com/pydna-group/pydna/actions/workflows/pydna_test_and_coverage_workflow.yml/badge.svg?branch=dev_bjorn)](https://github.com/pydna-group/pydna/actions/workflows/pydna_test_and_coverage_workflow.yml) | [![codecov](https://codecov.io/gh/BjornFJohansson/pydna/branch/master/graph/badge.svg)](https://codecov.io/gh/BjornFJohansson/pydna/branch/master) | [![PyPI version](https://badge.fury.io/py/pydna.svg)](https://badge.fury.io/py/pydna)                                                  | [![Google group : pydna](https://img.shields.io/badge/Google%20Group-pydna-blue.svg)](https://groups.google.com/g/pydna)          |
 | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | -------------------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------- |
@@ -442,7 +443,7 @@ Below are the instructions for developers who want to contribute to pydna. Pleas
 
 Fork the entire repository (not just the `master` branch by unticking the "Copy the `master` branch only" box)
 
-<img src="docs/_static/create-fork.png" alt="Fork repository" width="400">
+![Fork](https://github.com/pydna-group/pydna/blob/master/docs/_static/create-fork.png?raw=true)
 
 Create your branch starting from `dev_bjorn`, and if your changes are related to an issue, call the branch `issue_<number>`.
 

{pydna-5.5.0 → pydna-5.5.1}/README.md

@@ -1,4 +1,4 @@
-# ![icon](docs/_static/pydna.resized.png) pydna
+# ![icon](https://github.com/pydna-group/pydna/blob/master/docs/_static/pydna.resized.png?raw=true) pydna
 
 | [![Tests & Coverage](https://github.com/pydna-group/pydna/actions/workflows/pydna_test_and_coverage_workflow.yml/badge.svg?branch=dev_bjorn)](https://github.com/pydna-group/pydna/actions/workflows/pydna_test_and_coverage_workflow.yml) | [![codecov](https://codecov.io/gh/BjornFJohansson/pydna/branch/master/graph/badge.svg)](https://codecov.io/gh/BjornFJohansson/pydna/branch/master) | [![PyPI version](https://badge.fury.io/py/pydna.svg)](https://badge.fury.io/py/pydna)                                                  | [![Google group : pydna](https://img.shields.io/badge/Google%20Group-pydna-blue.svg)](https://groups.google.com/g/pydna)          |
 | ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ | -------------------------------------------------------------------------------------------------------------------------------------------------- | -------------------------------------------------------------------------------------------------------------------------------------- | --------------------------------------------------------------------------------------------------------------------------------- |
@@ -395,7 +395,7 @@ Below are the instructions for developers who want to contribute to pydna. Pleas
 
 Fork the entire repository (not just the `master` branch by unticking the "Copy the `master` branch only" box)
 
-<img src="docs/_static/create-fork.png" alt="Fork repository" width="400">
+![Fork](https://github.com/pydna-group/pydna/blob/master/docs/_static/create-fork.png?raw=true)
 
 Create your branch starting from `dev_bjorn`, and if your changes are related to an issue, call the branch `issue_<number>`.
 

{pydna-5.5.0 → pydna-5.5.1}/pyproject.toml

@@ -36,14 +36,17 @@ license = "BSD"
 name = "pydna"
 readme = "README.md"
 repository = "https://github.com/pydna-group/pydna/tree/master"
-version = "5.5.0"
+version = "5.5.1"
 [tool.poetry.dependencies]
 appdirs = ">=1.4.4"
-biopython = ">=1.80"
+biopython = ">=1.85"
 cai2 = { version = ">=1.0.5", optional = true }
 matplotlib = { version = ">=3.4.3", optional = true }
 networkx = ">=2.8.8"
-numpy = ">1.26"
+numpy = [
+  { version = ">1.26", python = "<3.12" },
+  { version = ">=2.3.0", python = ">=3.12" },
+]
 pillow = { version = ">=8.4.0", optional = true }
 prettytable = ">=3.5.0"
 pydivsufsort = ">=0.0.14"

{pydna-5.5.0 → pydna-5.5.1}/src/pydna/__init__.py

@@ -150,7 +150,7 @@ __license__ = "BSD"
 __maintainer__ = "Björn Johansson"
 __email__ = "bjorn_johansson@bio.uminho.pt"
 __status__ = "Development"  # "Production" #"Prototype"
-__version__ = "5.5.0"
+__version__ = "5.5.1"
 
 
 # create config directory