pydmoo 0.0.9__tar.gz → 0.0.11__tar.gz

{pydmoo-0.0.9 → pydmoo-0.0.11}/.github/workflows/docs.yml

@@ -41,6 +41,8 @@ jobs:
     needs: test
     steps:
       - uses: actions/checkout@v5
+        with:
+          token: ${{ secrets.GITHUB_TOKEN }}
 
       - name: Set up Python
         uses: actions/setup-python@v6

{pydmoo-0.0.9 → pydmoo-0.0.11}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pydmoo
-Version: 0.0.9
+Version: 0.0.11
 Summary: pydmoo
 Project-URL: Homepage, https://github.com/dynoptimization/pydmoo
 Project-URL: Repository, https://github.com/dynoptimization/pydmoo
@@ -35,10 +35,12 @@ Requires-Dist: statsmodels>=0.14.5
 Requires-Dist: tabulate>=0.9.0
 Description-Content-Type: text/markdown
 
-# pydmoo
+# Dynamic Multi-Objective Optimization in Python
+
+[![License](https://img.shields.io/badge/license-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html)
+![PyPI - Python Version](https://img.shields.io/pypi/pyversions/pydmoo)
+[![PyPI](https://img.shields.io/pypi/v/pydmoo)](https://pypi.org/project/pydmoo/)
 
 ## Dynamic Multi-Objective Optimization Problems (DMOPs)
 
 ## Dynamic Multi-Objective Optimization Algorithms (DMOAs)
-
-## Dynamic Multi-Objective Optimization Benchmarks (DMOBs)

pydmoo-0.0.11/README.md

@@ -0,0 +1,9 @@
+# Dynamic Multi-Objective Optimization in Python
+
+[![License](https://img.shields.io/badge/license-GPLv3-blue.svg)](https://www.gnu.org/licenses/gpl-3.0.en.html)
+![PyPI - Python Version](https://img.shields.io/pypi/pyversions/pydmoo)
+[![PyPI](https://img.shields.io/pypi/v/pydmoo)](https://pypi.org/project/pydmoo/)
+
+## Dynamic Multi-Objective Optimization Problems (DMOPs)
+
+## Dynamic Multi-Objective Optimization Algorithms (DMOAs)

pydmoo-0.0.11/docs/api-manual/index.md

@@ -0,0 +1 @@
+# Munual API

pydmoo-0.0.11/docs/reference/algorithms/knowledge-based.md

@@ -0,0 +1 @@
+# Knowledge-Based Algorithms

pydmoo-0.0.11/docs/reference/algorithms/memory-based.md

@@ -0,0 +1 @@
+# Memory-Based Algorithms

pydmoo-0.0.11/docs/reference/algorithms/multi-population-based.md

@@ -0,0 +1 @@
+# Multi-Population-Based Algorithms

pydmoo-0.0.11/docs/reference/algorithms/prediction-based.md

@@ -0,0 +1 @@
+# Prediction-Based Algorithms

{pydmoo-0.0.9 → pydmoo-0.0.11}/mkdocs.yml

@@ -66,7 +66,7 @@ plugins:
       default_handler: python
       handlers:
         python:
-          paths: [pydmoo]
+          paths: [.]
           options:
             docstring_style: numpy
             show_root_heading: true
@@ -133,14 +133,22 @@ nav:
   - Getting Started:
       - Installation: users-guide/installation.md
 
-  - API:
+  - Auto-API:
       - pydmoo: api-auto/pydmoo.md
       - API reference: api-auto.md
 
+  - Manual API:
+      - API reference: api-manual/index.md
+
   - Reference:
       - reference/index.md
       - Benchmarks: reference/problems/benchmarks.md
-      - Algorithms: reference/algorithms/diversity-based.md
+      - Algorithms:
+          - Diversity-Based: reference/algorithms/diversity-based.md
+          - Memory-Based: reference/algorithms/memory-based.md
+          - Multi-Population-Based: reference/algorithms/multi-population-based.md
+          - Knowledge-Based: reference/algorithms/knowledge-based.md
+          - Prediction-Based: reference/algorithms/prediction-based.md
       - Metrics: reference/metrics/index.md
       - Applications: reference/applications/index.md
 

pydmoo-0.0.11/pydmoo/response/bounds.py

@@ -0,0 +1,98 @@
+import numpy as np
+
+
+def matrix_conditional_update(x_curr, lb, ub, x_prev):
+    """
+    Vectorized conditional matrix update with bounded interpolation.
+
+    Parameters
+    ----------
+    x_curr : ndarray, shape (N, n)
+        Observation matrix.
+    lb : ndarray, shape (1, n) or (n,)
+        Lower bounds for each dimension.
+    ub : ndarray, shape (1, n) or (n,)
+        Upper bounds for each dimension.
+    x_prev : ndarray, shape (N, n)
+        Previous state matrix.
+
+    Returns
+    -------
+    ndarray, shape (N, n)
+        Updated matrix where:
+        - Values within bounds remain unchanged
+        - Values below bounds become 0.5*(a + x_prev)
+        - Values above bounds become 0.5*(b + x_prev)
+
+    Notes
+    -----
+    Uses NumPy broadcasting for efficient vectorized operations.
+    """
+    lb = np.reshape(lb, (1, -1))
+    ub = np.reshape(ub, (1, -1))
+    x_new = np.zeros_like(x_curr)
+
+    mask = (x_curr >= lb) & (x_curr <= ub)
+    x_new[mask] = x_curr[mask]
+
+    mask = x_curr < lb
+    x_new[mask] = 0.5 * (lb + x_prev)[mask]
+
+    mask = x_curr > ub
+    x_new[mask] = 0.5 * (ub + x_prev)[mask]
+
+    return x_new
+
+
+def clip_and_randomize(x, lb, ub):
+    """
+    Clip values to bounds with random replacement for out-of-bounds values.
+
+    Parameters
+    ----------
+    x : ndarray, shape (N, n)
+        Input matrix.
+    lb : ndarray, shape (1, n) or (n,)
+        Lower bounds.
+    ub : ndarray, shape (1, n) or (n,)
+        Upper bounds.
+
+    Returns
+    -------
+    ndarray, shape (N, n)
+        Matrix where out-of-bounds values are replaced with uniform random
+        values within [lb, ub] for each dimension.
+
+    See Also
+    --------
+    numpy.random.uniform : Used for random value generation.
+    """
+    out_of_bounds = (x < lb) | (x > ub)
+    random_samples = np.random.uniform(low=lb, high=ub, size=x.shape)
+    return np.where(out_of_bounds, random_samples, x)
+
+
+def clip_by_numpy(x, lb, ub):
+    """
+    Clip values to interval [lb, ub].
+
+    Parameters
+    ----------
+    x : ndarray
+        Array containing elements to clip.
+    lb : ndarray or scalar
+        Minimum value.
+    ub : ndarray or scalar
+        Maximum value.
+
+    Returns
+    -------
+    ndarray
+        Clipped array where:
+        x_clipped = max(lb, min(ub, x))
+
+    Notes
+    -----
+    This is a wrapper around numpy.clip() with identical behavior.
+    """
+    return np.clip(x, lb, ub)

{pydmoo-0.0.9 → pydmoo-0.0.11}/pyproject.toml

@@ -1,6 +1,6 @@
 [project]
 name = "pydmoo"
-version = "0.0.9"
+version = "0.0.11"
 description = "pydmoo"
 license = {text = "GPL-3.0-or-later"}
 authors = [

pydmoo-0.0.9/README.md

@@ -1,7 +0,0 @@
-# pydmoo
-
-## Dynamic Multi-Objective Optimization Problems (DMOPs)
-
-## Dynamic Multi-Objective Optimization Algorithms (DMOAs)
-
-## Dynamic Multi-Objective Optimization Benchmarks (DMOBs)

pydmoo-0.0.9/docs/api-auto/pydmoo.md

@@ -1,12 +0,0 @@
-# pydmoo API Reference
-
-pydmoo is a dynamic multi-objective optimization library providing various optimization algorithms and tools.
-
-## Module Overview
-
-::: pydmoo
-    options:
-      show_root_heading: false
-      show_submodules: true
-      heading_level: 3
-      show_source: false

pydmoo-0.0.9/docs/api-auto/response.ar_model.md

@@ -1,9 +0,0 @@
-# response.ar_model
-
-::: pydmoo.response.ar_model
-    options:
-      show_root_heading: false
-      show_submodules: true
-      heading_level: 2
-      show_source: true
-      show_category_heading: true

pydmoo-0.0.9/docs/api-auto/response.tca_model.md

@@ -1,9 +0,0 @@
-# response.tca_model
-
-::: pydmoo.response.tca_model
-    options:
-      show_root_heading: false
-      show_submodules: true
-      heading_level: 2
-      show_source: true
-      show_category_heading: true

pydmoo-0.0.9/docs/api-auto.md

@@ -1,10 +0,0 @@
-# API Reference
-
-This is the complete API reference documentation for the pydmoo library.
-
-## Module List
-
-### Root Modules
-
-- [response.ar_model](api-auto/response.ar_model.md)
-- [response.tca_model](api-auto/response.tca_model.md)