pydmoo 0.0.12__tar.gz → 0.0.13__tar.gz

{pydmoo-0.0.12 → pydmoo-0.0.13}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pydmoo
-Version: 0.0.12
+Version: 0.0.13
 Summary: pydmoo
 Project-URL: Homepage, https://github.com/dynoptimization/pydmoo
 Project-URL: Repository, https://github.com/dynoptimization/pydmoo
@@ -18,6 +18,7 @@ Classifier: Programming Language :: Python
 Classifier: Programming Language :: Python :: 3
 Classifier: Programming Language :: Python :: 3.12
 Classifier: Programming Language :: Python :: 3.13
+Classifier: Programming Language :: Python :: 3.14
 Classifier: Topic :: Scientific/Engineering
 Classifier: Topic :: Scientific/Engineering :: Artificial Intelligence
 Classifier: Topic :: Scientific/Engineering :: Mathematics

{pydmoo-0.0.12 → pydmoo-0.0.13}/mkdocs.yml

@@ -127,6 +127,9 @@ markdown_extensions:
       custom_checkbox: true
   - pymdownx.tilde
 
+extra_javascript:
+  - https://cdn.jsdelivr.net/npm/mathjax@3/es5/tex-mml-chtml.js
+
 nav:
   - Home: index.md
 

pydmoo-0.0.13/pydmoo/__init__.py

@@ -0,0 +1,5 @@
+from ._version import __version__
+
+__all__ = [
+    "__version__"
+]

pydmoo-0.0.13/pydmoo/_version.py

@@ -0,0 +1 @@
+__version__ = "0.0.13"

{pydmoo-0.0.12 → pydmoo-0.0.13}/pydmoo/problems/dyn.py

@@ -22,10 +22,10 @@ class DynamicTestProblem(DynamicProblem, ABC):
         self.tau = tau
         self.nt = nt
         self.taut = taut
-        self.t0 = t0  # added
+        self.t0 = t0  # added by DynOpt
         self._time = time
 
-        self.add_time_perturbation = add_time_perturbation  # added
+        self.add_time_perturbation = add_time_perturbation  # added by DynOpt
 
     def tic(self, elapsed=1):
 
@@ -42,7 +42,7 @@ class DynamicTestProblem(DynamicProblem, ABC):
         else:
             # return 1 / self.nt * (self.tau // self.taut)
 
-            # added
+            # added by DynOpt
             delta_time = 1 / self.nt
             count = max((self.tau + self.taut - (self.t0 + 1)), 0) // self.taut
 
@@ -60,7 +60,7 @@ class DynamicTestProblem(DynamicProblem, ABC):
     def time(self, value):
         self._time = value
 
-    # added
+    # added by DynOpt
     def update_to_next_time(self):
 
         # update to next time
@@ -78,7 +78,7 @@ class TimeSimulation(Callback):
     def update(self, algorithm):
         problem = algorithm.problem
 
-        # added
+        # added by DynOpt
         # Designed to handle time-linkage properties within the GTS test suites.
         if hasattr(problem, "time_linkage") and hasattr(problem, "cal"):
             problem.cal(algorithm.opt.get("F"))

{pydmoo-0.0.12 → pydmoo-0.0.13}/pydmoo/problems/dynamic/gts.py

@@ -16,47 +16,47 @@ def knee_point(F):
 
 
 def G_t(t):
-    """G(t) = sin(0.5πt)"""
+    """\\( G(t) = \\sin(0.5\\pi t) \\)"""
     return np.sin(0.5 * np.pi * t)
 
 
 def H_t(t):
-    """H(t) = 1.5 + G(t)"""
+    """\\( H(t) = 1.5 + G(t) \\)"""
     return 1.5 + G_t(t)
 
 
 def alpha_t(t):
-    """αt = 5cos(0.5πt)"""
+    """\\( \\alpha_t = 5\\cos(0.5\\pi t) \\)"""
     return 5 * np.cos(0.5 * np.pi * t)
 
 
 def beta_t(t):
-    """βt = 0.2 + 2.8|G(t)|"""
+    """\\( \\beta_t = 0.2 + 2.8|G(t)| \\)"""
     return 0.2 + 2.8 * np.abs(G_t(t))
 
 
 def omega_t(t):
-    """ωt = ⌊10G(t)⌋"""
+    """\\( \\omega_t = \\lfloor 10G(t) \\rfloor \\)"""
     return np.floor(10 * G_t(t))
 
 
 def a_t(t):
-    """a = sin(0.5πt)"""
+    """\\( a(t) = \\sin(0.5\\pi t) \\)"""
     return np.sin(0.5 * np.pi * t)
 
 
 def b_t(t):
-    """b = 1 + |cos(0.5πt)|"""
+    """\\( b(t) = 1 + |\\cos(0.5\\pi t)| \\)"""
     return 1 + np.abs(np.cos(0.5 * np.pi * t))
 
 
 def y_t(x1, t):
-    """y = 0.5 + G(t)(x1 - 0.5)"""
+    """\\( y_t(x_1) = 0.5 + G(t)(x_1 - 0.5) \\)"""
     return 0.5 + G_t(t) * (x1 - 0.5)
 
 
 def p_t(t):
-    """pt = ⌊6G(t)⌋"""
+    """\\( p_t = \\lfloor 6G(t) \\rfloor \\)"""
     return np.floor(6 * G_t(t))
 
 
@@ -131,6 +131,43 @@ class GTS(DynamicTestProblem):
 
 
 class GTS1(GTS):
+    r"""
+    \begin{equation}
+    \text{min}
+    \begin{cases}
+    f_1(\mathbf{x},t) = x_1 \\
+    f_2(\mathbf{x},t) = g(\mathbf{x},t)(1 -  (\frac{x_1}{g(\mathbf{x},t)})^{H(t)})
+    \end{cases}
+    \end{equation}
+
+    with
+
+    \begin{equation*}
+    \begin{split}
+    g(\mathbf{x},t) = 1
+    &+ \Bigl(\bigl(\mathbf{x}_{II,1} - h_1(\mathbf{x}_I)\bigr)^T \mathbf{R}_{II,1}(t) \bigl(\mathbf{x}_{II,1} - h_1(\mathbf{x}_I)\bigr)\Bigr)^{\frac{1}{p}} \\
+    &+ \Bigl(\bigl(\mathbf{x}_{II,2} - h_2(\mathbf{x}_I)\bigr)^T \mathbf{R}_{II,2}(t) \bigl(\mathbf{x}_{II,2} - h_2(\mathbf{x}_I)\bigr)\Bigr)^{\frac{1}{p}}
+    \end{split}
+    \end{equation*}
+
+    where $p \geq 1$, $\mathbf{x}_I = (x_1)$, $\mathbf{x}_{II,1} = (x_2, \cdots, x_{\lfloor\frac{D}{2}\rfloor})$ and $\mathbf{x}_{II,2} = (x_{\lfloor\frac{D}{2}\rfloor + 1}, \cdots, x_D)$,
+    $h_1(\mathbf{x}_I, t) = \cos(0.5\pi t)$ and $h_2(\mathbf{x}_I, t) = G(t) + x_1^{H(t)}$,
+    $\mathbf{R}_{II,1}(t)$ and $\mathbf{R}_{II,2}(t)$ are symmetric positive semidefinite matrices in the $t$-th environment,
+    the search space is $[0,1] \times [-1,1]^{\lfloor\frac{D}{2}\rfloor -1} \times  [-1, 2]^{\lceil\frac{D}{2}\rceil}$.
+
+    The PF and PS at time t can be described as:
+
+    \begin{equation*}
+        \begin{aligned}
+            & \text{PS(t): }0 \leq x_1 \leq 1, x_i = h_1(\mathbf{x}_I, t), x_i \in \mathbf{x}_{II,1},  x_j = h_2(\mathbf{x}_I, t), \in \mathbf{x}_{II,2} \\
+            & \text{PF(t): a part of }f_2 = 1 - f_1^{H(t)}, 0 \leq f_1 \leq 1
+        \end{aligned}
+    \end{equation*}
+
+    ![GTS1 PS](../figs/PS/GTS1.png)
+
+    ![GTS1 PF](../figs/PF/GTS1.png)
+    """
     def __init__(self, **kwargs):
         super().__init__(part_idx=1, bounds=((0, 1), (-1, 1), (-1, 2)), **kwargs)
 
@@ -165,6 +202,43 @@ class GTS1(GTS):
 
 
 class GTS2(GTS):
+    r"""
+    \begin{equation}
+    \text{min}
+    \begin{cases}
+    f_1(\mathbf{x},t) = 0.5x_1+x_2 \\
+    f_2(\mathbf{x},t) = g(\mathbf{x},t)(2.8 - (\frac{0.5x_1+x_2}{g(\mathbf{x},t)})^{H(t)})
+    \end{cases}
+    \end{equation}
+
+    with
+
+    \begin{equation*}
+    \begin{split}
+    g(\mathbf{x},t) = 1
+    &+ \Bigl(\bigl(\mathbf{x}_{II,1} - h_1(\mathbf{x}_I)\bigr)^T \mathbf{R}_{II,1}(t) \bigl(\mathbf{x}_{II,1} - h_1(\mathbf{x}_I)\bigr)\Bigr)^{\frac{1}{p}} \\
+    &+ \Bigl(\bigl(\mathbf{x}_{II,2} - h_2(\mathbf{x}_I)\bigr)^T \mathbf{R}_{II,2}(t) \bigl(\mathbf{x}_{II,2} - h_2(\mathbf{x}_I)\bigr)\Bigr)^{\frac{1}{p}}
+    \end{split}
+    \end{equation*}
+
+    where $p \geq 1$, $\mathbf{x}_I = (x_1, x_2)$, $\mathbf{x}_{II,1} = (x_3, \cdots, x_{\lfloor\frac{D}{2}\rfloor + 1})$ and $\mathbf{x}_{II,2} = (x_{\lfloor\frac{D}{2}\rfloor + 2}, \cdots, x_D)$, $c = \cot(3\pi t^2), \text{when } t^2 \neq \frac{n}{3}, n \in \mathbb{Z}, c = 1e-32, \text{otherwise}$,
+    $h_1(\mathbf{x}_I, t) = \frac{1}{\pi}\left\vert{\arctan(c)}\right\vert$ and $h_2(\mathbf{x}_I, t) = G(t) + x_1^{H(t)}$,
+    $\mathbf{R}_{II,1}(t)$ and $\mathbf{R}_{II,2}(t)$ are symmetric positive semidefinite matrices in the $t$-th environment,
+    the search space is $[0,1]^2 \times [0,1]^{\lfloor\frac{D}{2}\rfloor -1} \times  [-1, 2]^{\lceil\frac{D}{2}\rceil-1}$.
+
+    The PF and PS at time t can be described as:
+
+    \begin{equation*}
+        \begin{aligned}
+            & \text{PS(t): }0 \leq x_{1,2} \leq 1, x_i = h_1(\mathbf{x}_I, t), x_i \in \mathbf{x}_{II,1},  x_j = h_2(\mathbf{x}_I, t), \in \mathbf{x}_{II,2} \\
+            & \text{PF(t): }f_2 = 2.8 - f_1^{H(t)}, 0 \leq f_1 \leq 1.5
+        \end{aligned}
+    \end{equation*}
+
+    ![GTS2 PS](../figs/PS/GTS2.png)
+
+    ![GTS2 PF](../figs/PF/GTS2.png)
+    """
     def __init__(self, **kwargs):
         super().__init__(part_idx=2, bounds=((0, 1), (0, 1), (-1, 2)), **kwargs)
 

{pydmoo-0.0.12 → pydmoo-0.0.13}/pyproject.toml

@@ -1,8 +1,9 @@
 [project]
 name = "pydmoo"
-version = "0.0.12"
+dynamic = ["version"]
 description = "pydmoo"
 license = {text = "GPL-3.0-or-later"}
+license-files = ["LICENSE"]
 authors = [
     {name = "DynOpt", email = "dynoptimization@gmail.com"},
 ]
@@ -15,14 +16,15 @@ keywords = [
     "Dynamic Multi-objective Optimization"
 ]
 classifiers = [
-    'Operating System :: OS Independent',
-    'Programming Language :: Python',
+    "Operating System :: OS Independent",
+    "Programming Language :: Python",
     "Programming Language :: Python :: 3",
-    'Programming Language :: Python :: 3.12',
-    'Programming Language :: Python :: 3.13',
-    'Topic :: Scientific/Engineering',
-    'Topic :: Scientific/Engineering :: Artificial Intelligence',
-    'Topic :: Scientific/Engineering :: Mathematics',
+    "Programming Language :: Python :: 3.12",
+    "Programming Language :: Python :: 3.13",
+    "Programming Language :: Python :: 3.14",
+    "Topic :: Scientific/Engineering",
+    "Topic :: Scientific/Engineering :: Artificial Intelligence",
+    "Topic :: Scientific/Engineering :: Mathematics",
 ]
 requires-python = ">=3.12"
 dependencies = [
@@ -49,13 +51,27 @@ Changelog = "https://github.com/dynoptimization/pydmoo/releases"
 
 [dependency-groups]
 dev = [
-    "black>=25.9.0",
+    "pytest>=8.4.2",
+    "pytest-cov>=7.0.0",
+]
+
+lint = [
     "flake8>=7.3.0",
-    "isort>=6.1.0",
-    "mypy>=1.18.2",
     "pycodestyle>=2.14.0",
     "pydocstyle>=6.3.0",
+]
+format = [
+    "black>=25.9.0",
+    "isort>=6.1.0",
+]
+type = [
+    "mypy>=1.18.2",
+]
+all-lint-format = [
     "ruff>=0.14.0",
+]
+
+docs = [
     "mkdocs>=1.6.1",
     "mkdocs-autorefs>=1.4.3",
     "mkdocs-material>=9.6.21",
@@ -99,3 +115,6 @@ include_trailing_comma = true
 [build-system]
 requires = ["hatchling"]
 build-backend = "hatchling.build"
+
+[tool.hatch.version]
+path ="pydmoo/_version.py"

{pydmoo-0.0.12 → pydmoo-0.0.13}/uv.lock

@@ -234,6 +234,80 @@ wheels = [
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 ]
 
+[[package]]
+name = "coverage"
+version = "7.10.7"
+source = { registry = "https://pypi.org/simple" }
+sdist = { url = "https://files.pythonhosted.org/packages/51/26/d22c300112504f5f9a9fd2297ce33c35f3d353e4aeb987c8419453b2a7c2/coverage-7.10.7.tar.gz", hash = "sha256:f4ab143ab113be368a3e9b795f9cd7906c5ef407d6173fe9675a902e1fffc239", size = 827704, upload-time = "2025-09-21T20:03:56.815Z" }
+wheels = [
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 version = "2.14.0"
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 [[package]]
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 source = { editable = "." }
 dependencies = [
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@@ -1075,10 +1166,14 @@ dependencies = [
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 [package.dev-dependencies]
+all-lint-format = [
+    { name = "ruff" },
+]
 dev = [
-    { name = "black" },
-    { name = "flake8" },
-    { name = "isort" },
+    { name = "pytest" },
+    { name = "pytest-cov" },
+]
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     { name = "mkdocs-autorefs" },
     { name = "mkdocs-material" },
@@ -1086,10 +1181,18 @@ dev = [
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     { name = "mkdocs-redirects" },
     { name = "mkdocstrings", extra = ["python"] },
-    { name = "mypy" },
+]
+format = [
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+    { name = "isort" },
+]
+lint = [
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-    { name = "ruff" },
+]
+type = [
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 [package.metadata.requires-dev]
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-    { name = "flake8", specifier = ">=7.3.0" },
-    { name = "isort", specifier = ">=6.1.0" },
+    { name = "pytest", specifier = ">=8.4.2" },
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+]
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     { name = "pydocstyle", specifier = ">=6.3.0" },
-    { name = "ruff", specifier = ">=0.14.0" },
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+type = [{ name = "mypy", specifier = ">=1.18.2" }]
 
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