pycomorb 0.4__tar.gz → 0.4.1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (30) hide show
  1. {pycomorb-0.4/src/pycomorb.egg-info → pycomorb-0.4.1}/PKG-INFO +2 -2
  2. {pycomorb-0.4 → pycomorb-0.4.1}/README.md +1 -1
  3. {pycomorb-0.4 → pycomorb-0.4.1}/pyproject.toml +1 -1
  4. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/CustomComorbidityIndex.py +0 -25
  5. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/__init__.py +1 -1
  6. {pycomorb-0.4 → pycomorb-0.4.1/src/pycomorb.egg-info}/PKG-INFO +2 -2
  7. {pycomorb-0.4 → pycomorb-0.4.1}/LICENSE +0 -0
  8. {pycomorb-0.4 → pycomorb-0.4.1}/setup.cfg +0 -0
  9. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/CharlsonComorbidityIndex.py +0 -0
  10. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/ElixhauserComorbidityIndex.py +0 -0
  11. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/GagneComorbidityIndex.py +0 -0
  12. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/HospitalFrailtyRiskScore.py +0 -0
  13. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_AUSTRALIA.csv +0 -0
  14. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_DEYO.csv +0 -0
  15. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_DHOORE.csv +0 -0
  16. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_QUAN.csv +0 -0
  17. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_ROMANO.csv +0 -0
  18. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_SWEDEN.csv +0 -0
  19. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/CHARLSON_UK_SHMI_v1.55.csv +0 -0
  20. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/ELIXHAUSER.csv +0 -0
  21. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/ELIXHAUSER_AHRQ_ICD10.csv +0 -0
  22. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/ELIXHAUSER_AHRQ_ICD9.csv +0 -0
  23. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/ELIXHAUSER_QUAN.csv +0 -0
  24. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/ELIXHAUSER_WEIGHTS.csv +0 -0
  25. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/GAGNE.csv +0 -0
  26. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/common/HFRS.csv +0 -0
  27. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb.egg-info/SOURCES.txt +0 -0
  28. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb.egg-info/dependency_links.txt +0 -0
  29. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb.egg-info/requires.txt +0 -0
  30. {pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb.egg-info/top_level.txt +0 -0
{pycomorb-0.4/src/pycomorb.egg-info → pycomorb-0.4.1}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pycomorb
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- Version: 0.4
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+ Version: 0.4.1
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  Summary: Comorbidity and frailty score calculation utilities (Charlson, Elixhauser, Gagne, HFRS) using polars
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  Author-email: Finn Fassbender <finn.fassbender@charite.de>
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  License-Expression: MIT
@@ -32,7 +32,7 @@ It is inspired by the R package [`comorbidity`](https://github.com/ellessenne/co
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  ## Supported Variants
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- See [common/README.md](src/pycomorb/common/README.md) for more details and references.
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+ See [common/README.md](https://github.com/CUB-CORR/pycomorb/blob/main/src/pycomorb/common/README.md) for more details and references.
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  ### Charlson Comorbidity Index
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{pycomorb-0.4 → pycomorb-0.4.1}/README.md RENAMED
@@ -17,7 +17,7 @@ It is inspired by the R package [`comorbidity`](https://github.com/ellessenne/co
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  ## Supported Variants
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- See [common/README.md](src/pycomorb/common/README.md) for more details and references.
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+ See [common/README.md](https://github.com/CUB-CORR/pycomorb/blob/main/src/pycomorb/common/README.md) for more details and references.
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  ### Charlson Comorbidity Index
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{pycomorb-0.4 → pycomorb-0.4.1}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [project]
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  name = "pycomorb"
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- version = "0.4"
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+ version = "0.4.1"
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  authors = [
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  { name="Finn Fassbender", email="finn.fassbender@charite.de" },
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  ]
{pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/CustomComorbidityIndex.py RENAMED
@@ -132,31 +132,6 @@ def CustomComorbidityIndex(
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  .drop_nulls("best_prefix")
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  )
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- (
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- unique_codes.with_columns(
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- pl.col(code_col).str.slice(0, n).alias(f"prefix_{n}")
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- for n in range(1, len(longest_code) + 1)
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- )
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- .with_columns(
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- pl.when(pl.col(f"prefix_{n}").is_in(code_prefixes))
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- .then(pl.col(f"prefix_{n}"))
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- .otherwise(None)
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- .alias(f"prefix_{n}")
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- for n in range(1, len(longest_code) + 1)
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- )
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- .with_columns(
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- pl.concat_list(
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- pl.col(f"prefix_{n}")
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- for n in range(1, len(longest_code) + 1)
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- )
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- .list.drop_nulls()
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- .list.unique()
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- .list.join(", ")
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- .alias("best_prefixes")
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- )
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- .write_csv("best_prefix.csv")
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- )
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-
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  code_to_category = (
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  best_prefix.join(
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  code_map, left_on="best_prefix", right_on="prefix", how="left"
{pycomorb-0.4 → pycomorb-0.4.1}/src/pycomorb/__init__.py RENAMED
@@ -2,7 +2,7 @@
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  __author__ = """Finn Fassbender"""
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  __email__ = "finn.fassbender@charite.de"
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- __version__ = "0.4"
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+ __version__ = "0.4.1"
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  from .CharlsonComorbidityIndex import CharlsonComorbidityIndex
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  from .ElixhauserComorbidityIndex import ElixhauserComorbidityIndex
{pycomorb-0.4 → pycomorb-0.4.1/src/pycomorb.egg-info}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pycomorb
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- Version: 0.4
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+ Version: 0.4.1
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  Summary: Comorbidity and frailty score calculation utilities (Charlson, Elixhauser, Gagne, HFRS) using polars
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  Author-email: Finn Fassbender <finn.fassbender@charite.de>
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  License-Expression: MIT
@@ -32,7 +32,7 @@ It is inspired by the R package [`comorbidity`](https://github.com/ellessenne/co
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  ## Supported Variants
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- See [common/README.md](src/pycomorb/common/README.md) for more details and references.
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+ See [common/README.md](https://github.com/CUB-CORR/pycomorb/blob/main/src/pycomorb/common/README.md) for more details and references.
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  ### Charlson Comorbidity Index
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{pycomorb-0.4 → pycomorb-0.4.1}/LICENSE RENAMED
File without changes
{pycomorb-0.4 → pycomorb-0.4.1}/setup.cfg RENAMED
File without changes