pycode-kg 0.28.1__tar.gz → 0.28.2__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (62) hide show
  1. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/PKG-INFO +9 -9
  2. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/README.md +4 -4
  3. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/pyproject.toml +5 -5
  4. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/__init__.py +1 -1
  5. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/pycodekg_thorough_analysis.py +60 -0
  6. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/LICENSE +0 -0
  7. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/.DS_Store +0 -0
  8. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/__main__.py +0 -0
  9. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/analysis/__init__.py +0 -0
  10. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/analysis/bridge.py +0 -0
  11. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/analysis/centrality.py +0 -0
  12. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/analysis/framework_detector.py +0 -0
  13. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/app.py +0 -0
  14. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/architecture.py +0 -0
  15. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/build_pycodekg_sqlite.py +0 -0
  16. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/__init__.py +0 -0
  17. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_analyze.py +0 -0
  18. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_architecture.py +0 -0
  19. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_bridges.py +0 -0
  20. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_build.py +0 -0
  21. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_build_full.py +0 -0
  22. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_centrality.py +0 -0
  23. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_explain.py +0 -0
  24. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_framework_nodes.py +0 -0
  25. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_hooks.py +0 -0
  26. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_init.py +0 -0
  27. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_mcp.py +0 -0
  28. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_model.py +0 -0
  29. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_query.py +0 -0
  30. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_quilt.py +0 -0
  31. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_snapshot.py +0 -0
  32. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/cmd_viz.py +0 -0
  33. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/main.py +0 -0
  34. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/cli/options.py +0 -0
  35. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/config.py +0 -0
  36. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/explain.py +0 -0
  37. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/graph.py +0 -0
  38. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/graph_html.py +0 -0
  39. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/index.py +0 -0
  40. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/kg.py +0 -0
  41. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/layout3d.py +0 -0
  42. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/mcp_server.py +0 -0
  43. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/module/__init__.py +0 -0
  44. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/module/base.py +0 -0
  45. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/module/extractor.py +0 -0
  46. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/module/types.py +0 -0
  47. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/pycodekg.py +0 -0
  48. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/ranking/__init__.py +0 -0
  49. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/ranking/cli_rank.py +0 -0
  50. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/ranking/coderank.py +0 -0
  51. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/render.py +0 -0
  52. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/report.py +0 -0
  53. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/resolution.py +0 -0
  54. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/scene3d.py +0 -0
  55. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/snapshots.py +0 -0
  56. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/sql/004_add_centrality_table.sql +0 -0
  57. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/store.py +0 -0
  58. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/theme.py +0 -0
  59. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/utils.py +0 -0
  60. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/visitor.py +0 -0
  61. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/viz3d.py +0 -0
  62. {pycode_kg-0.28.1 → pycode_kg-0.28.2}/src/pycode_kg/viz3d_timeline.py +0 -0
@@ -1,6 +1,6 @@
1
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  Metadata-Version: 2.4
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  Name: pycode-kg
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- Version: 0.28.1
3
+ Version: 0.28.2
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  Summary: A tool to build a searchable knowledge graph from Python repositories
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  License-Expression: Elastic-2.0
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  License-File: LICENSE
@@ -21,8 +21,8 @@ Provides-Extra: viz3d
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  Requires-Dist: PyQt5 (>=5.15.0) ; extra == "all"
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  Requires-Dist: PyQt5 (>=5.15.0) ; extra == "viz3d"
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  Requires-Dist: click (>=8.1.0,<9)
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- Requires-Dist: kgmodule-utils[semantic,viz3d] (>=0.23.0)
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- Requires-Dist: kgmodule-utils[viz3d-qt,viz3d-render] (>=0.23.0) ; extra == "viz3d"
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+ Requires-Dist: kgmodule-utils[semantic,viz3d] (>=0.27.0)
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+ Requires-Dist: kgmodule-utils[viz3d-qt,viz3d-render] (>=0.27.0) ; extra == "viz3d"
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  Requires-Dist: markdown (>=3.6) ; extra == "all"
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  Requires-Dist: markdown (>=3.6) ; extra == "viz3d"
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  Requires-Dist: mcp (>=1.3.0,<2)
@@ -38,8 +38,8 @@ Requires-Dist: pyvis (>=0.3.2) ; extra == "viz"
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  Requires-Dist: pyvista (>=0.44.0) ; extra == "all"
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  Requires-Dist: pyvistaqt (>=0.11.0) ; extra == "all"
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  Requires-Dist: pyvistaqt (>=0.11.0) ; extra == "viz3d"
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- Requires-Dist: quiltwright (>=0.15.0) ; extra == "all"
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- Requires-Dist: quiltwright (>=0.15.0) ; extra == "viz3d"
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+ Requires-Dist: quiltwright (>=0.16.0) ; extra == "all"
42
+ Requires-Dist: quiltwright (>=0.16.0) ; extra == "viz3d"
43
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  Requires-Dist: rich (>=14.3.3,<15)
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  Requires-Dist: sentence-transformers (>=5.4.1)
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  Requires-Dist: sqlite-vec (==0.1.9)
@@ -60,7 +60,7 @@ Description-Content-Type: text/markdown
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61
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  [![Python](https://img.shields.io/badge/python-3.12%20%7C%203.13-blue.svg)](https://www.python.org/)
62
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  [![License: Elastic-2.0](https://img.shields.io/badge/License-Elastic%202.0-blue.svg)](https://www.elastic.co/licensing/elastic-license)
63
- [![Version](https://img.shields.io/badge/version-0.28.1-blue.svg)](https://github.com/Flux-Frontiers/pycode_kg/releases)
63
+ [![Version](https://img.shields.io/badge/version-0.28.2-blue.svg)](https://github.com/Flux-Frontiers/pycode_kg/releases)
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  [![CI](https://github.com/Flux-Frontiers/pycode_kg/actions/workflows/ci.yml/badge.svg)](https://github.com/Flux-Frontiers/pycode_kg/actions/workflows/ci.yml)
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  [![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
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  [![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.19737993-blue.svg)](https://doi.org/10.5281/zenodo.19737993)
@@ -255,7 +255,7 @@ src/pycode_kg/
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  └── viz3d_timeline.py # Metric history timeline
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  ```
257
257
 
258
- The MCP server, the CLI, and the Streamlit app are thin wrappers over the same store + index + ranking core — there is exactly one code path for each capability. The latest architectural deep-dive is in [docs/analysis_v0.28.1.md](docs/analysis_v0.28.1.md), produced (of course) by `pycodekg analyze` against this very repo.
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+ The MCP server, the CLI, and the Streamlit app are thin wrappers over the same store + index + ranking core — there is exactly one code path for each capability. The latest architectural deep-dive is in [docs/analysis_v0.28.2.md](docs/analysis_v0.28.2.md), produced (of course) by `pycodekg analyze` against this very repo.
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260
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  ---
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@@ -282,13 +282,13 @@ If you use PyCodeKG in your research or project, please cite it:
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  [![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.19737993-blue.svg)](https://doi.org/10.5281/zenodo.19737993)
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284
 
285
- > Suchanek, E. G. (2026). *PyCodeKG: A Knowledge Graph for Python Codebases* (Version 0.28.1) [Software]. Flux-Frontiers. https://doi.org/10.5281/zenodo.19737993
285
+ > Suchanek, E. G. (2026). *PyCodeKG: A Knowledge Graph for Python Codebases* (Version 0.28.2) [Software]. Flux-Frontiers. https://doi.org/10.5281/zenodo.19737993
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286
 
287
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  ```bibtex
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  @software{suchanek_pycode_kg,
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  author = {Suchanek, Eric G.},
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  title = {{PyCodeKG}: A Knowledge Graph for Python Codebases},
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- version = {0.28.1},
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+ version = {0.28.2},
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  year = {2026},
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  publisher = {Flux-Frontiers},
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  url = {https://github.com/Flux-Frontiers/pycode_kg},
@@ -5,7 +5,7 @@
5
5
 
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  [![Python](https://img.shields.io/badge/python-3.12%20%7C%203.13-blue.svg)](https://www.python.org/)
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  [![License: Elastic-2.0](https://img.shields.io/badge/License-Elastic%202.0-blue.svg)](https://www.elastic.co/licensing/elastic-license)
8
- [![Version](https://img.shields.io/badge/version-0.28.1-blue.svg)](https://github.com/Flux-Frontiers/pycode_kg/releases)
8
+ [![Version](https://img.shields.io/badge/version-0.28.2-blue.svg)](https://github.com/Flux-Frontiers/pycode_kg/releases)
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  [![CI](https://github.com/Flux-Frontiers/pycode_kg/actions/workflows/ci.yml/badge.svg)](https://github.com/Flux-Frontiers/pycode_kg/actions/workflows/ci.yml)
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  [![Poetry](https://img.shields.io/endpoint?url=https://python-poetry.org/badge/v0.json)](https://python-poetry.org/)
11
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  [![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.19737993-blue.svg)](https://doi.org/10.5281/zenodo.19737993)
@@ -200,7 +200,7 @@ src/pycode_kg/
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  └── viz3d_timeline.py # Metric history timeline
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  ```
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203
- The MCP server, the CLI, and the Streamlit app are thin wrappers over the same store + index + ranking core — there is exactly one code path for each capability. The latest architectural deep-dive is in [docs/analysis_v0.28.1.md](docs/analysis_v0.28.1.md), produced (of course) by `pycodekg analyze` against this very repo.
203
+ The MCP server, the CLI, and the Streamlit app are thin wrappers over the same store + index + ranking core — there is exactly one code path for each capability. The latest architectural deep-dive is in [docs/analysis_v0.28.2.md](docs/analysis_v0.28.2.md), produced (of course) by `pycodekg analyze` against this very repo.
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205
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  ---
206
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@@ -227,13 +227,13 @@ If you use PyCodeKG in your research or project, please cite it:
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228
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  [![DOI](https://img.shields.io/badge/DOI-10.5281%2Fzenodo.19737993-blue.svg)](https://doi.org/10.5281/zenodo.19737993)
229
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230
- > Suchanek, E. G. (2026). *PyCodeKG: A Knowledge Graph for Python Codebases* (Version 0.28.1) [Software]. Flux-Frontiers. https://doi.org/10.5281/zenodo.19737993
230
+ > Suchanek, E. G. (2026). *PyCodeKG: A Knowledge Graph for Python Codebases* (Version 0.28.2) [Software]. Flux-Frontiers. https://doi.org/10.5281/zenodo.19737993
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  ```bibtex
233
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  @software{suchanek_pycode_kg,
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  author = {Suchanek, Eric G.},
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  title = {{PyCodeKG}: A Knowledge Graph for Python Codebases},
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- version = {0.28.1},
236
+ version = {0.28.2},
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  year = {2026},
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  publisher = {Flux-Frontiers},
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  url = {https://github.com/Flux-Frontiers/pycode_kg},
@@ -70,7 +70,7 @@ torch = [
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  # ---------------------------------------------------------------------------
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  [project]
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  name = "pycode-kg"
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- version = "0.28.1"
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+ version = "0.28.2"
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  description = "A tool to build a searchable knowledge graph from Python repositories"
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  readme = "README.md"
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  license = "Elastic-2.0"
@@ -169,7 +169,7 @@ dependencies = [
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  # and the _domain_metrics() hook, none of which exist before 0.20.0.
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  # Against 0.19.x the manager silently reports itself as "kg-utils" and
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  # drops module_node_counts entirely.
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- "kgmodule-utils[semantic,viz3d]>=0.23.0",
172
+ "kgmodule-utils[semantic,viz3d]>=0.27.0",
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  ]
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175
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  [project.optional-dependencies]
@@ -194,7 +194,7 @@ viz3d = [
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  # the four-step build/render/write/cast itself. It subsumes [viz3d-render]
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  # (it declares pyvista too), but both are named so the dependency reads as
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  # what it is rather than as a side effect.
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- "kgmodule-utils[viz3d-render,viz3d-qt]>=0.23.0",
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+ "kgmodule-utils[viz3d-render,viz3d-qt]>=0.27.0",
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  "pyvistaqt>=0.11.0",
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  "trame-vtk>=2.0.0",
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  # Looking Glass quilts. 0.4.0 supplies depth_report() and widened
@@ -204,7 +204,7 @@ viz3d = [
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  # 0.14.1 is what kgmodule-utils[viz3d-qt] >=0.22.0 needs transitively, for
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  # resolve_view_cone; declared here so this file states the real floor
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  # rather than leaving it to the resolver to discover.
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- "quiltwright>=0.15.0",
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+ "quiltwright>=0.16.0",
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  ]
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  # Cross-KG sibling packages (doc-kg, pycode-kg, agent-kg, kg-rag) are NOT
@@ -229,7 +229,7 @@ all = [
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  "pyvis>=0.3.2",
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  "pyvista>=0.44.0",
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  "pyvistaqt>=0.11.0",
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- "quiltwright>=0.15.0",
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+ "quiltwright>=0.16.0",
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  "streamlit>=1.56.0",
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  "trame-vtk>=2.0.0",
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  ]
@@ -36,7 +36,7 @@ Author: Eric G. Suchanek, PhD
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  License: Elastic 2.0
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  """
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39
- __version__ = "0.28.1"
39
+ __version__ = "0.28.2"
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  __author__ = "Eric G. Suchanek, PhD"
41
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  # Low-level primitives (locked v0 contract)
@@ -27,6 +27,7 @@ Author: Eric G. Suchanek, PhD
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  License: Elastic 2.0
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  """
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30
+ import ast
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  import datetime
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  import importlib
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  import inspect
@@ -136,6 +137,28 @@ _PROPERTY_DECORATOR_RE = re.compile(
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  r"@(?:functools\.)?(?:cached_)?property\b|@\w[\w.]*\.(?:setter|getter|deleter)\b"
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  )
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140
+ # Route-registration decorator attributes on a web-framework app or router:
141
+ # ``@app.get(...)``, ``@router.post(...)``, ``@app.middleware("http")``
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+ # (FastAPI, Starlette) and ``@app.route(...)`` (Flask). The framework calls
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+ # the handler, so the graph never sees a CALLS edge to it.
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+ _ROUTE_DECORATOR_ATTRS = frozenset(
145
+ {
146
+ "get",
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+ "post",
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+ "put",
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+ "patch",
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+ "delete",
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+ "head",
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+ "options",
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+ "api_route",
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+ "route",
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+ "middleware",
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+ "websocket",
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+ "exception_handler",
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+ "on_event",
159
+ }
160
+ )
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+
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  # Builtin container/str method names live in pycode_kg.resolution, where the
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  # post-build hook prunes their bogus RESOLVES_TO edges at the source. The
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  # analyzer still guards its own reads (chain tracing, fan-out) so it stays
@@ -356,6 +379,33 @@ def _has_property_decorator(source_lines: list[str], def_lineno: int) -> bool:
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  return False
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358
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382
+ def _has_route_decorator(source: str, def_lineno: int) -> bool:
383
+ """Check whether the ``def`` at *def_lineno* is registered as a web route.
384
+
385
+ Matches a decorator of the form ``@<obj>.<attr>`` or ``@<obj>.<attr>(...)``
386
+ with ``attr`` in :data:`_ROUTE_DECORATOR_ATTRS`. The module is parsed
387
+ rather than scanned line by line because route decorators often span
388
+ several lines (``@app.post(\n "/x",\n response_model=M,\n)``).
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+
390
+ :param source: Full module source text.
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+ :param def_lineno: 1-based line number of the ``def`` statement.
392
+ :return: True when a route-registration decorator precedes the definition;
393
+ False when it does not, or the source does not parse.
394
+ """
395
+ try:
396
+ tree = ast.parse(source)
397
+ except SyntaxError:
398
+ return False
399
+ for node in ast.walk(tree):
400
+ if isinstance(node, (ast.FunctionDef, ast.AsyncFunctionDef)) and node.lineno == def_lineno:
401
+ for dec in node.decorator_list:
402
+ target = dec.func if isinstance(dec, ast.Call) else dec
403
+ if isinstance(target, ast.Attribute) and target.attr in _ROUTE_DECORATOR_ATTRS:
404
+ return True
405
+ return False
406
+ return False
407
+
408
+
359
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  def _dotted_module(module_path: str) -> str:
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  """Convert a repo-relative module path to its dotted import path.
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@@ -928,6 +978,8 @@ class PyCodeKGAnalyzer:
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  - Property-family methods — accessed as attributes, not calls
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  - MCP tools in ``mcp_server.py`` — dispatched by the MCP router
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  - Click handlers in CLI modules — dispatched by Click
981
+ - Web route handlers (``@app.get``, ``@router.post``,
982
+ ``@app.middleware``, ...) -- dispatched by the web framework
931
983
  - ``visit_*`` on ``ast.NodeVisitor`` subclasses — ``getattr`` dispatch
932
984
  - Overrides of SDK protocol methods on classes with external bases —
933
985
  invoked by the kg_utils pipeline
@@ -1014,6 +1066,14 @@ class PyCodeKGAnalyzer:
1014
1066
  if len(re.findall(rf"\b{re.escape(name)}\b", source)) > 1:
1015
1067
  return True
1016
1068
 
1069
+ # Web route handlers: registered by decorator and called by the
1070
+ # framework's router, so no CALLS edge reaches them.
1071
+ if kind in ("function", "method"):
1072
+ source = self._module_source(module)
1073
+ lineno = node.get("lineno")
1074
+ if source and lineno and _has_route_decorator(source, lineno):
1075
+ return True
1076
+
1017
1077
  return False
1018
1078
 
1019
1079
  def _is_unverifiable_override(self, node: dict, ctx: dict) -> bool:
File without changes