pycmplot 0.2.9__tar.gz → 0.3.0__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (34) hide show
  1. {pycmplot-0.2.9 → pycmplot-0.3.0}/PKG-INFO +1 -1
  2. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/__init__.py +1 -1
  3. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/annotation.py +2 -2
  4. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/plotting/linear.py +0 -1
  5. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/PKG-INFO +1 -1
  6. {pycmplot-0.2.9 → pycmplot-0.3.0}/pyproject.toml +1 -1
  7. {pycmplot-0.2.9 → pycmplot-0.3.0}/setup.cfg +1 -1
  8. {pycmplot-0.2.9 → pycmplot-0.3.0}/LICENSE +0 -0
  9. {pycmplot-0.2.9 → pycmplot-0.3.0}/README.md +0 -0
  10. {pycmplot-0.2.9 → pycmplot-0.3.0}/benchmark/bench_python.py +0 -0
  11. {pycmplot-0.2.9 → pycmplot-0.3.0}/benchmark/collect_results.py +0 -0
  12. {pycmplot-0.2.9 → pycmplot-0.3.0}/benchmark/generate_multi_sumstats.py +0 -0
  13. {pycmplot-0.2.9 → pycmplot-0.3.0}/benchmark/generate_sumstats.py +0 -0
  14. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/__main__.py +0 -0
  15. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/_core.py +0 -0
  16. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/cli.py +0 -0
  17. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/constants.py +0 -0
  18. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/data/Homo_sapiens.GRCh37.geneinfo.tsv.gz +0 -0
  19. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/data/Homo_sapiens.GRCh38.geneinfo.tsv.gz +0 -0
  20. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/data/hg18ToHg38.over.chain.gz +0 -0
  21. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/data/hg19ToHg38.over.chain.gz +0 -0
  22. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/io.py +0 -0
  23. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/liftover.py +0 -0
  24. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/plotting/__init__.py +0 -0
  25. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/plotting/circular.py +0 -0
  26. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/plotting/qq.py +0 -0
  27. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/resources.py +0 -0
  28. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/stats.py +0 -0
  29. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/SOURCES.txt +0 -0
  30. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/dependency_links.txt +0 -0
  31. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/entry_points.txt +0 -0
  32. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/requires.txt +0 -0
  33. {pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/top_level.txt +0 -0
  34. {pycmplot-0.2.9 → pycmplot-0.3.0}/setup.py +0 -0
{pycmplot-0.2.9 → pycmplot-0.3.0}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pycmplot
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- Version: 0.2.9
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+ Version: 0.3.0
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  Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
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  Author: Kevin Esoh
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  Author-email: Kevin Esoh <kesohku1@jh.edu>
{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/__init__.py RENAMED
@@ -47,4 +47,4 @@ __all__ = [
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  "ResourceConfig",
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  ]
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- __version__ = "0.2.9"
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+ __version__ = "0.3.0"
{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/annotation.py RENAMED
@@ -589,11 +589,11 @@ def get_annotation_column(
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  try:
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  if row["genic"]:
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  label_clm = "nearest_upstream_gene"
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- label_msg = "'POS' is genic"
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+ label_msg = f"Signal {row['SNP']} at {row['POS']} is genic [{row['nearest_upstream_gene']}]"
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  else:
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  label_clm = "top_gene"
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  label_msg = "'POS' is not genic"
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- logger.info("%s", label_msg)
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+ #logger.info("%s", label_msg)
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  except Exception:
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  logger.warning(
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  "Annotation columns '%s' and '%s' not found in hits table: %s; "
{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/plotting/linear.py RENAMED
@@ -1375,7 +1375,6 @@ def plot_linearm(
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  differences = np.diff(df_chr['POS']).tolist()
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  less_than_spread_width.append(list(filter(lambda x: x < s_width, differences)))
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  less_than_spread_width = [l for l in less_than_spread_width if not len(l) == 0]
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- print(len(less_than_spread_width))
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  if len(less_than_spread_width) < 5:
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  _draw_annotation_arrows(
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  ax_annot,
{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pycmplot
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- Version: 0.2.9
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+ Version: 0.3.0
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  Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
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  Author: Kevin Esoh
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  Author-email: Kevin Esoh <kesohku1@jh.edu>
{pycmplot-0.2.9 → pycmplot-0.3.0}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
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  [project]
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  name = "pycmplot"
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- version = "0.2.9"
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+ version = "0.3.0"
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  description = "Multi-track circular and linear Manhattan plot generation for GWAS summary statistics"
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  readme = "README.md"
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  license = "MIT"
{pycmplot-0.2.9 → pycmplot-0.3.0}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
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  [metadata]
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  name = pycmplot
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- version = 0.2.9
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+ version = 0.3.0
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  author = Kevin Esoh
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  author_email = kesohku1@jh.edu
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  description = Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
{pycmplot-0.2.9 → pycmplot-0.3.0}/LICENSE RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/README.md RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/__main__.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/_core.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/cli.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/constants.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/io.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/liftover.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/resources.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/pycmplot/stats.py RENAMED
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{pycmplot-0.2.9 → pycmplot-0.3.0}/setup.py RENAMED
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