pycmplot 0.2.7__tar.gz → 0.2.9__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (35) hide show
  1. {pycmplot-0.2.7 → pycmplot-0.2.9}/PKG-INFO +9 -1
  2. {pycmplot-0.2.7 → pycmplot-0.2.9}/README.md +8 -0
  3. pycmplot-0.2.9/benchmark/bench_python.py +808 -0
  4. {pycmplot-0.2.7 → pycmplot-0.2.9}/benchmark/collect_results.py +85 -23
  5. pycmplot-0.2.9/benchmark/generate_multi_sumstats.py +230 -0
  6. {pycmplot-0.2.7 → pycmplot-0.2.9}/benchmark/generate_sumstats.py +0 -0
  7. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/__init__.py +1 -1
  8. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/_core.py +30 -5
  9. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/cli.py +9 -1
  10. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/plotting/circular.py +12 -35
  11. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/plotting/linear.py +801 -581
  12. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/plotting/qq.py +46 -38
  13. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot.egg-info/PKG-INFO +9 -1
  14. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot.egg-info/SOURCES.txt +1 -0
  15. {pycmplot-0.2.7 → pycmplot-0.2.9}/pyproject.toml +1 -1
  16. {pycmplot-0.2.7 → pycmplot-0.2.9}/setup.cfg +1 -1
  17. pycmplot-0.2.7/benchmark/bench_python.py +0 -266
  18. {pycmplot-0.2.7 → pycmplot-0.2.9}/LICENSE +0 -0
  19. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/__main__.py +0 -0
  20. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/annotation.py +0 -0
  21. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/constants.py +0 -0
  22. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/data/Homo_sapiens.GRCh37.geneinfo.tsv.gz +0 -0
  23. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/data/Homo_sapiens.GRCh38.geneinfo.tsv.gz +0 -0
  24. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/data/hg18ToHg38.over.chain.gz +0 -0
  25. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/data/hg19ToHg38.over.chain.gz +0 -0
  26. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/io.py +0 -0
  27. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/liftover.py +0 -0
  28. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/plotting/__init__.py +0 -0
  29. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/resources.py +0 -0
  30. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot/stats.py +0 -0
  31. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot.egg-info/dependency_links.txt +0 -0
  32. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot.egg-info/entry_points.txt +0 -0
  33. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot.egg-info/requires.txt +0 -0
  34. {pycmplot-0.2.7 → pycmplot-0.2.9}/pycmplot.egg-info/top_level.txt +0 -0
  35. {pycmplot-0.2.7 → pycmplot-0.2.9}/setup.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.4
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  Name: pycmplot
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- Version: 0.2.7
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+ Version: 0.2.9
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  Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
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  Author: Kevin Esoh
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  Author-email: Kevin Esoh <kesohku1@jh.edu>
@@ -143,6 +143,14 @@ for gene annotation. Also included are UCSC chain files for coordinate conversio
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  A potential useful application is **comparative visualization** of results from multiple imputation panels,
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  multiple populations, or multiple traits to observe shared genetic architecture.
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+ # Tip
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+ For signed non-pvalue statistics such as iHS, use `--signif_threshold` and
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+ `--suggest_threshold` to specify lines to draw for iHS cutoff above and below zero,
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+ that is in the positive and negative axes.
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  Read more in the package documentation page: https://pycmplot.readthedocs.io/en/latest/
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  ---
@@ -104,6 +104,14 @@ for gene annotation. Also included are UCSC chain files for coordinate conversio
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  A potential useful application is **comparative visualization** of results from multiple imputation panels,
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  multiple populations, or multiple traits to observe shared genetic architecture.
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+ # Tip
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+ For signed non-pvalue statistics such as iHS, use `--signif_threshold` and
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+ `--suggest_threshold` to specify lines to draw for iHS cutoff above and below zero,
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+ that is in the positive and negative axes.
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  Read more in the package documentation page: https://pycmplot.readthedocs.io/en/latest/
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  ---