pycmplot 0.1.4__tar.gz → 0.1.5__tar.gz

{pycmplot-0.1.4/pycmplot.egg-info → pycmplot-0.1.5}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pycmplot
-Version: 0.1.4
+Version: 0.1.5
 Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
 Author: Kevin Esoh
 Author-email: Kevin Esoh <kesohku1@jhmi.edu>
@@ -66,16 +66,16 @@ command-line or python API:
 Candidate names for each of the columns is shown below.
 
 ```python
-    # Resolve column names
-    chr_candidates = [chrom, 'CHR', 'CHROM', 'Chromosome', '#CHROM', '#CHR', 'Chrom', 'chrom', 'chr', 'chromosome', '#chr', '#chrom']
-    pos_candidates = [pos, 'BP', 'POS', 'bp', 'pos', 'Basepair']
-    snp_candidates = [snp, 'SNP', 'RSID', 'rsID', 'MarkerName', 'MarkerID', 'Predictor', 'Marker', 'SNPID', 'ID']
-    pvl_candidates = [pcol, 'P', 'P-value', 'Wald_P', 'pvalue', 'p_val', 'pval']
-    bld_candidates = [build, 'BUILD', 'Genome', 'Genome_Build', 'Genome-build']
+# Resolve column names
+chr_candidates = [chrom, 'CHR', 'CHROM', 'Chromosome', '#CHROM', '#CHR', 'Chrom', 'chrom', 'chr', 'chromosome', '#chr', '#chrom']
+pos_candidates = [pos, 'BP', 'POS', 'bp', 'pos', 'Basepair']
+snp_candidates = [snp, 'SNP', 'RSID', 'rsID', 'MarkerName', 'MarkerID', 'Predictor', 'Marker', 'SNPID', 'ID']
+pvl_candidates = [pcol, 'P', 'P-value', 'Wald_P', 'pvalue', 'p_val', 'pval']
+bld_candidates = [build, 'BUILD', 'Genome', 'Genome_Build', 'Genome-build']
 ```
 
 Since GWAS summary stats files can be very large, to improve speed and memory efficiency, it is 
-highly recommended to use `-tp, --trim_pval` with a value to exclude variants with p-value above a 
+**highly recommended** to use `-tp, --trim_pval` with a value to exclude variants with p-value above a 
 certain threshold, e.g. `0.01 (1e-2)` or `0.001 (1e-3)`.
 
 ---

{pycmplot-0.1.4 → pycmplot-0.1.5}/README.md

@@ -41,16 +41,16 @@ command-line or python API:
 Candidate names for each of the columns is shown below.
 
 ```python
-    # Resolve column names
-    chr_candidates = [chrom, 'CHR', 'CHROM', 'Chromosome', '#CHROM', '#CHR', 'Chrom', 'chrom', 'chr', 'chromosome', '#chr', '#chrom']
-    pos_candidates = [pos, 'BP', 'POS', 'bp', 'pos', 'Basepair']
-    snp_candidates = [snp, 'SNP', 'RSID', 'rsID', 'MarkerName', 'MarkerID', 'Predictor', 'Marker', 'SNPID', 'ID']
-    pvl_candidates = [pcol, 'P', 'P-value', 'Wald_P', 'pvalue', 'p_val', 'pval']
-    bld_candidates = [build, 'BUILD', 'Genome', 'Genome_Build', 'Genome-build']
+# Resolve column names
+chr_candidates = [chrom, 'CHR', 'CHROM', 'Chromosome', '#CHROM', '#CHR', 'Chrom', 'chrom', 'chr', 'chromosome', '#chr', '#chrom']
+pos_candidates = [pos, 'BP', 'POS', 'bp', 'pos', 'Basepair']
+snp_candidates = [snp, 'SNP', 'RSID', 'rsID', 'MarkerName', 'MarkerID', 'Predictor', 'Marker', 'SNPID', 'ID']
+pvl_candidates = [pcol, 'P', 'P-value', 'Wald_P', 'pvalue', 'p_val', 'pval']
+bld_candidates = [build, 'BUILD', 'Genome', 'Genome_Build', 'Genome-build']
 ```
 
 Since GWAS summary stats files can be very large, to improve speed and memory efficiency, it is 
-highly recommended to use `-tp, --trim_pval` with a value to exclude variants with p-value above a 
+**highly recommended** to use `-tp, --trim_pval` with a value to exclude variants with p-value above a 
 certain threshold, e.g. `0.01 (1e-2)` or `0.001 (1e-3)`.
 
 ---

{pycmplot-0.1.4 → pycmplot-0.1.5/pycmplot.egg-info}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.4
 Name: pycmplot
-Version: 0.1.4
+Version: 0.1.5
 Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
 Author: Kevin Esoh
 Author-email: Kevin Esoh <kesohku1@jhmi.edu>
@@ -66,16 +66,16 @@ command-line or python API:
 Candidate names for each of the columns is shown below.
 
 ```python
-    # Resolve column names
-    chr_candidates = [chrom, 'CHR', 'CHROM', 'Chromosome', '#CHROM', '#CHR', 'Chrom', 'chrom', 'chr', 'chromosome', '#chr', '#chrom']
-    pos_candidates = [pos, 'BP', 'POS', 'bp', 'pos', 'Basepair']
-    snp_candidates = [snp, 'SNP', 'RSID', 'rsID', 'MarkerName', 'MarkerID', 'Predictor', 'Marker', 'SNPID', 'ID']
-    pvl_candidates = [pcol, 'P', 'P-value', 'Wald_P', 'pvalue', 'p_val', 'pval']
-    bld_candidates = [build, 'BUILD', 'Genome', 'Genome_Build', 'Genome-build']
+# Resolve column names
+chr_candidates = [chrom, 'CHR', 'CHROM', 'Chromosome', '#CHROM', '#CHR', 'Chrom', 'chrom', 'chr', 'chromosome', '#chr', '#chrom']
+pos_candidates = [pos, 'BP', 'POS', 'bp', 'pos', 'Basepair']
+snp_candidates = [snp, 'SNP', 'RSID', 'rsID', 'MarkerName', 'MarkerID', 'Predictor', 'Marker', 'SNPID', 'ID']
+pvl_candidates = [pcol, 'P', 'P-value', 'Wald_P', 'pvalue', 'p_val', 'pval']
+bld_candidates = [build, 'BUILD', 'Genome', 'Genome_Build', 'Genome-build']
 ```
 
 Since GWAS summary stats files can be very large, to improve speed and memory efficiency, it is 
-highly recommended to use `-tp, --trim_pval` with a value to exclude variants with p-value above a 
+**highly recommended** to use `-tp, --trim_pval` with a value to exclude variants with p-value above a 
 certain threshold, e.g. `0.01 (1e-2)` or `0.001 (1e-3)`.
 
 ---

{pycmplot-0.1.4 → pycmplot-0.1.5}/pyproject.toml

@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
 
 [project]
 name = "pycmplot"
-version = "0.1.4"
+version = "0.1.5"
 description = "Multi-track circular and linear Manhattan plot generation for GWAS summary statistics"
 readme = "README.md"
 license = { text = "MIT" }

{pycmplot-0.1.4 → pycmplot-0.1.5}/setup.cfg

@@ -1,6 +1,6 @@
 [metadata]
 name = pycmplot
-version = 0.1.4
+version = 0.1.5
 author = Kevin Esoh
 author_email = kesohku1@jhmi.edu
 description = Multi-track circular and linear Manhattan plot generation for GWAS summary statistics