pycmplot 0.1.1__tar.gz → 0.1.3__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (26) hide show
  1. {pycmplot-0.1.1 → pycmplot-0.1.3}/PKG-INFO +2 -17
  2. {pycmplot-0.1.1 → pycmplot-0.1.3}/README.md +1 -16
  3. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/PKG-INFO +2 -17
  4. {pycmplot-0.1.1 → pycmplot-0.1.3}/pyproject.toml +1 -1
  5. {pycmplot-0.1.1 → pycmplot-0.1.3}/setup.cfg +1 -1
  6. {pycmplot-0.1.1 → pycmplot-0.1.3}/LICENSE +0 -0
  7. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/__init__.py +0 -0
  8. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/_core.py +0 -0
  9. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/annotation.py +0 -0
  10. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/cli.py +0 -0
  11. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/constants.py +0 -0
  12. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/data/Homo_sapiens.GRCh37.geneinfo.tsv.gz +0 -0
  13. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/data/Homo_sapiens.GRCh38.geneinfo.tsv.gz +0 -0
  14. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/data/hg19ToHg38.over.chain +0 -0
  15. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/io.py +0 -0
  16. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/liftover.py +0 -0
  17. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/plotting/circular.py +0 -0
  18. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/plotting/linear.py +0 -0
  19. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/resources.py +0 -0
  20. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/stats.py +0 -0
  21. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/SOURCES.txt +0 -0
  22. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/dependency_links.txt +0 -0
  23. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/entry_points.txt +0 -0
  24. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/requires.txt +0 -0
  25. {pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/top_level.txt +0 -0
  26. {pycmplot-0.1.1 → pycmplot-0.1.3}/setup.py +0 -0
{pycmplot-0.1.1 → pycmplot-0.1.3}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pycmplot
3
- Version: 0.1.1
3
+ Version: 0.1.3
4
4
  Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
5
5
  Author: Kevin Esoh
6
6
  Author-email: Kevin Esoh <kesohku1@jhmi.edu>
@@ -44,22 +44,6 @@ pip install pycmplot
44
44
  ```
45
45
 
46
46
 
47
- ### From source code
48
- ```bash
49
- wget https://files.pythonhosted.org/packages/a2/c7/c21312ec5e5cfe22d11535a5fba5b63a11337659160243b73e1728eec14d/pycmplot-0.1.0.tar.gz
50
-
51
- tar zxvf pycmplot-0.1.0.tar.gz
52
-
53
- cd pycmplot-0.1.0
54
-
55
- pip install -e .
56
-
57
- # or
58
-
59
- pip install -e . --break-system-packages
60
- ```
61
-
62
-
63
47
  ### From GitHub
64
48
  ```bash
65
49
  git clone https://github.com/esohkevin/pycmplot.git
@@ -142,6 +126,7 @@ pycmplot \
142
126
  |------|-------------|---------|
143
127
  | `-s, --sum_stats` | Comma-separated sumstats files | **required** |
144
128
  | `-l, --labels` | Comma-separated track labels | **required** |
129
+ | `-b, --build_column` | Genome build column name (containing hg18/hg19/hg38) | **required** |
145
130
  | `-m, --mode` | `lm` linear or `cm` circular | `lm` |
146
131
  | `-qq, --qq_plot` | Also generate a QQ-plot | off (coming soon...) |
147
132
  | `--logp` | Plot -log10(p) | off |
{pycmplot-0.1.1 → pycmplot-0.1.3}/README.md RENAMED
@@ -20,22 +20,6 @@ pip install pycmplot
20
20
  ```
21
21
 
22
22
 
23
- ### From source code
24
- ```bash
25
- wget https://files.pythonhosted.org/packages/a2/c7/c21312ec5e5cfe22d11535a5fba5b63a11337659160243b73e1728eec14d/pycmplot-0.1.0.tar.gz
26
-
27
- tar zxvf pycmplot-0.1.0.tar.gz
28
-
29
- cd pycmplot-0.1.0
30
-
31
- pip install -e .
32
-
33
- # or
34
-
35
- pip install -e . --break-system-packages
36
- ```
37
-
38
-
39
23
  ### From GitHub
40
24
  ```bash
41
25
  git clone https://github.com/esohkevin/pycmplot.git
@@ -118,6 +102,7 @@ pycmplot \
118
102
  |------|-------------|---------|
119
103
  | `-s, --sum_stats` | Comma-separated sumstats files | **required** |
120
104
  | `-l, --labels` | Comma-separated track labels | **required** |
105
+ | `-b, --build_column` | Genome build column name (containing hg18/hg19/hg38) | **required** |
121
106
  | `-m, --mode` | `lm` linear or `cm` circular | `lm` |
122
107
  | `-qq, --qq_plot` | Also generate a QQ-plot | off (coming soon...) |
123
108
  | `--logp` | Plot -log10(p) | off |
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot.egg-info/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.4
2
2
  Name: pycmplot
3
- Version: 0.1.1
3
+ Version: 0.1.3
4
4
  Summary: Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
5
5
  Author: Kevin Esoh
6
6
  Author-email: Kevin Esoh <kesohku1@jhmi.edu>
@@ -44,22 +44,6 @@ pip install pycmplot
44
44
  ```
45
45
 
46
46
 
47
- ### From source code
48
- ```bash
49
- wget https://files.pythonhosted.org/packages/a2/c7/c21312ec5e5cfe22d11535a5fba5b63a11337659160243b73e1728eec14d/pycmplot-0.1.0.tar.gz
50
-
51
- tar zxvf pycmplot-0.1.0.tar.gz
52
-
53
- cd pycmplot-0.1.0
54
-
55
- pip install -e .
56
-
57
- # or
58
-
59
- pip install -e . --break-system-packages
60
- ```
61
-
62
-
63
47
  ### From GitHub
64
48
  ```bash
65
49
  git clone https://github.com/esohkevin/pycmplot.git
@@ -142,6 +126,7 @@ pycmplot \
142
126
  |------|-------------|---------|
143
127
  | `-s, --sum_stats` | Comma-separated sumstats files | **required** |
144
128
  | `-l, --labels` | Comma-separated track labels | **required** |
129
+ | `-b, --build_column` | Genome build column name (containing hg18/hg19/hg38) | **required** |
145
130
  | `-m, --mode` | `lm` linear or `cm` circular | `lm` |
146
131
  | `-qq, --qq_plot` | Also generate a QQ-plot | off (coming soon...) |
147
132
  | `--logp` | Plot -log10(p) | off |
{pycmplot-0.1.1 → pycmplot-0.1.3}/pyproject.toml RENAMED
@@ -4,7 +4,7 @@ build-backend = "setuptools.build_meta"
4
4
 
5
5
  [project]
6
6
  name = "pycmplot"
7
- version = "0.1.1"
7
+ version = "0.1.3"
8
8
  description = "Multi-track circular and linear Manhattan plot generation for GWAS summary statistics"
9
9
  readme = "README.md"
10
10
  license = { text = "MIT" }
{pycmplot-0.1.1 → pycmplot-0.1.3}/setup.cfg RENAMED
@@ -1,6 +1,6 @@
1
1
  [metadata]
2
2
  name = pycmplot
3
- version = 0.1.1
3
+ version = 0.1.3
4
4
  author = Kevin Esoh
5
5
  author_email = kesohku1@jhmi.edu
6
6
  description = Multi-track circular and linear Manhattan plot generation for GWAS summary statistics
{pycmplot-0.1.1 → pycmplot-0.1.3}/LICENSE RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/__init__.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/_core.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/cli.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/constants.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/io.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/liftover.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/resources.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/pycmplot/stats.py RENAMED
File without changes
{pycmplot-0.1.1 → pycmplot-0.1.3}/setup.py RENAMED
File without changes