pychemstation 0.5.6__tar.gz → 0.5.7.dev1__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (40) hide show
  1. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/PKG-INFO +1 -1
  2. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/controllers/method.py +13 -2
  3. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/hplc.py +3 -0
  4. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/method_types.py +2 -0
  5. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/table_types.py +3 -0
  6. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation.egg-info/PKG-INFO +1 -1
  7. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/setup.py +1 -1
  8. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/LICENSE +0 -0
  9. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/README.md +0 -0
  10. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/__init__.py +0 -0
  11. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/analysis/__init__.py +0 -0
  12. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/analysis/base_spectrum.py +0 -0
  13. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/analysis/spec_utils.py +0 -0
  14. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/analysis/utils.py +0 -0
  15. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/__init__.py +0 -0
  16. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/controllers/__init__.py +0 -0
  17. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/controllers/comm.py +0 -0
  18. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/controllers/sequence.py +0 -0
  19. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/control/controllers/table_controller.py +0 -0
  20. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/generated/__init__.py +0 -0
  21. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/generated/dad_method.py +0 -0
  22. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/generated/pump_method.py +0 -0
  23. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/__init__.py +0 -0
  24. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/chromatogram.py +0 -0
  25. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/macro.py +0 -0
  26. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/parsing.py +0 -0
  27. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/sequence_types.py +0 -0
  28. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation/utils/tray_types.py +0 -0
  29. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation.egg-info/SOURCES.txt +0 -0
  30. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation.egg-info/dependency_links.txt +0 -0
  31. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation.egg-info/requires.txt +0 -0
  32. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pychemstation.egg-info/top_level.txt +0 -0
  33. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/pyproject.toml +0 -0
  34. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/setup.cfg +0 -0
  35. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/tests/__init__.py +0 -0
  36. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/tests/constants.py +0 -0
  37. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/tests/test_comb.py +0 -0
  38. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/tests/test_comm.py +0 -0
  39. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/tests/test_method.py +0 -0
  40. {pychemstation-0.5.6 → pychemstation-0.5.7.dev1}/tests/test_sequence.py +0 -0
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pychemstation
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- Version: 0.5.6
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+ Version: 0.5.7.dev1
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  Summary: Library to interact with Chemstation software, primarily used in Hein lab
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  Home-page: https://gitlab.com/heingroup/device-api/pychemstation
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  Author: Lucy Hao
@@ -21,6 +21,14 @@ class MethodController(TableController):
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  def __init__(self, controller: CommunicationController, src: str, data_dir: str, table: Table):
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  super().__init__(controller, src, data_dir, table)
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+ def check_loaded_method(self):
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+ time.sleep(2)
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+ self.send(Command.GET_METHOD_CMD)
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+ time.sleep(2)
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+ res = self.receive()
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+ if res.is_ok():
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+ return res.ok_value.string_response
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+
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  def get_method_params(self) -> HPLCMethodParams:
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  return HPLCMethodParams(organic_modifier=self.controller.get_num_val(
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  cmd=TableOperation.GET_OBJ_HDR_VAL.value.format(
@@ -50,8 +58,12 @@ class MethodController(TableController):
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  def load(self) -> MethodTimetable:
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  rows = self.get_num_rows()
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  if rows.is_ok():
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+ self.send(Command.GET_METHOD_CMD)
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+ res = self.receive()
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+ method_name = res.ok_value.string_response
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  timetable_rows = [self.get_row(r + 1) for r in range(int(rows.ok_value.num_response))]
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  self.table_state = MethodTimetable(
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+ name=method_name,
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  first_row=self.get_method_params(),
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  subsequent_rows=timetable_rows)
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  return self.table_state
@@ -124,8 +136,7 @@ class MethodController(TableController):
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  first_row=HPLCMethodParams(
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  organic_modifier=organic_modifier.percentage,
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  flow=method.flow,
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- maximum_run_time=method.stop_time,
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- temperature=-1),
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+ maximum_run_time=method.stop_time),
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  subsequent_rows=[
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  TimeTableEntry(
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  start_time=tte.time,
@@ -138,6 +138,9 @@ class HPLCController:
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  """
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  return self.sequence_controller.get_data()
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+ def check_loaded_method(self) -> str:
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+ return self.method_controller.check_loaded_method()
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+
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  def load_method(self) -> MethodTimetable:
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  """
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  Returns the currently loaded method, including its timetable.
@@ -6,6 +6,7 @@ from .table_types import RegisterFlag
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  from ..generated import Signal, SolventElement
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+
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  class PType(Enum):
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  STR = "str"
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  NUM = "num"
@@ -34,6 +35,7 @@ class TimeTableEntry:
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  @dataclass
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  class MethodTimetable:
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+ name: str
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  first_row: HPLCMethodParams
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  subsequent_rows: list[TimeTableEntry]
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  dad_wavelengthes: Optional[list[Signal]] = None
@@ -46,6 +46,9 @@ class RegisterFlag(Enum):
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  # for Method Timetable
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  SOLVENT_COMPOSITION = "SolventComposition"
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+ PRESSURE = "Pressure"
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+ EXTERNAL_CONTACT = "ExternalContact"
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+
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  # for Sequence
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  VIAL_LOCATION = "Vial"
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.1
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  Name: pychemstation
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- Version: 0.5.6
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+ Version: 0.5.7.dev1
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  Summary: Library to interact with Chemstation software, primarily used in Hein lab
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  Home-page: https://gitlab.com/heingroup/device-api/pychemstation
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  Author: Lucy Hao
@@ -5,7 +5,7 @@ with open("README.md", "r") as fh:
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5
 
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  setuptools.setup(
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  name="pychemstation",
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- version="0.5.6",
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+ version="0.5.7.dev1",
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  author="Lucy Hao",
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  author_email="lhao03@student.ubc.ca",
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  description="Library to interact with Chemstation software, primarily used in Hein lab",