pyccapt 0.2.1__tar.gz → 0.2.3__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- pyccapt-0.2.3/CHANGELOG.txt +28 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/LICENSE +674 -674
- {pyccapt-0.2.1 → pyccapt-0.2.3}/MANIFEST.in +16 -16
- {pyccapt-0.2.1/pyccapt.egg-info → pyccapt-0.2.3}/PKG-INFO +458 -354
- pyccapt-0.2.3/README.md +321 -0
- pyccapt-0.2.3/pyccapt/__init__.py +16 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/CALIBRATION.md +87 -67
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/DATA_STRUCTURE.md +79 -58
- {pyccapt-0.2.1/pyccapt/control/thorlabs_apt → pyccapt-0.2.3/pyccapt/calibration}/__init__.py +1 -1
- pyccapt-0.2.3/pyccapt/calibration/clustering/__init__.py +31 -0
- pyccapt-0.2.3/pyccapt/calibration/clustering/clustering.py +957 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/clustering/isosurface.py +256 -270
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/__init__.py +14 -13
- pyccapt-0.2.3/pyccapt/calibration/core/adaptive_residual_calibration.py +981 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/background.py +10 -10
- pyccapt-0.2.3/pyccapt/calibration/core/calibration.py +1837 -0
- pyccapt-0.2.3/pyccapt/calibration/core/correction_models.py +315 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/diagnostics.py +137 -130
- pyccapt-0.2.3/pyccapt/calibration/core/event_filters.py +304 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/exceptions.py +13 -13
- pyccapt-0.2.3/pyccapt/calibration/core/flight_path_t0.py +482 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/gui_ion_select.py +198 -182
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/hist_bin_optimizer.py +196 -190
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/interactive_point_identification.py +132 -134
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/ion_selection.py +753 -659
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/logging_library.py +66 -66
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/mc_plot.py +781 -569
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/mc_plot_api.py +295 -230
- pyccapt-0.2.3/pyccapt/calibration/core/mc_plot_background_helpers.py +392 -0
- pyccapt-0.2.3/pyccapt/calibration/core/mc_plot_peak_helpers.py +1553 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/mc_plot_selector_helpers.py +52 -53
- pyccapt-0.2.3/pyccapt/calibration/core/ml_calibration.py +411 -0
- pyccapt-0.2.3/pyccapt/calibration/core/new_methods.py +935 -0
- pyccapt-0.2.3/pyccapt/calibration/core/parallel.py +235 -0
- pyccapt-0.2.3/pyccapt/calibration/core/peak_spectral_analysis.py +333 -0
- pyccapt-0.2.3/pyccapt/calibration/core/reference_optimizer.py +593 -0
- pyccapt-0.2.3/pyccapt/calibration/core/share_variables.py +437 -0
- pyccapt-0.2.3/pyccapt/calibration/core/spectrum_simulation.py +90 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/tools.py +520 -380
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/validation.py +86 -72
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/core/widgets.py +312 -297
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/data_tools/__init__.py +1 -1
- pyccapt-0.2.3/pyccapt/calibration/data_tools/_raw_workflow_common.py +1210 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/_raw_workflow_roentdek.py +484 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/_raw_workflow_surface_concept.py +2378 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/ato_tools.py +214 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/data_tools/data_loadcrop.py +1013 -679
- pyccapt-0.2.3/pyccapt/calibration/data_tools/data_tools.py +755 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/dataset_path_qt.py +83 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/file_dialog.py +61 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/hdf5_schema.py +114 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/lazy_io.py +654 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/data_tools/merge_range.py +55 -56
- pyccapt-0.2.3/pyccapt/calibration/data_tools/partial_hit_diagnostics.py +872 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/partial_recovery.py +727 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/plot_vline_draw.py +130 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/raw_data_surface_concept.py +588 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/raw_data_workflow.py +151 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/run_dataset_path_qt.py +12 -0
- pyccapt-0.2.3/pyccapt/calibration/data_tools/run_directory_path_qt.py +11 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/data_tools/selectors_data.py +102 -90
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/leap_tools/__init__.py +5 -1
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/cameca_raw/README.md +20 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/cameca_raw/__init__.py +39 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/cameca_raw/_rhit_calibration.py +704 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/cameca_raw/rhit_extract.py +7 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/cameca_raw/rhit_tools.py +583 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/cameca_raw/str_tools.py +715 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/ccapt_tools.py +322 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/leap_tools/cloud_plotter.py +142 -138
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/leap_tools.py +942 -0
- pyccapt-0.2.3/pyccapt/calibration/leap_tools/matlab_fig_range.py +480 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/mc/__init__.py +1 -1
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/mc/mc_tools.py +107 -106
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/mc/tof_tools.py +33 -32
- pyccapt-0.2.3/pyccapt/calibration/path_utils.py +84 -0
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/__init__.py +5 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/reconstructions/crystal_helper.py +359 -356
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/reconstructions/density_map.py +264 -233
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/fft.py +125 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/reconstructions/io_utils.py +92 -81
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/iso_surface.py +1280 -0
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/plot_bounds.py +60 -0
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/proxigram.py +314 -0
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/rdf.py +156 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/reconstructions/reconstruction.py +1226 -1098
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/reconstructions/rotation_tools.py +106 -108
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/calibration/reconstructions/sdm.py +631 -513
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/specimen_builder.py +173 -0
- pyccapt-0.2.3/pyccapt/calibration/reconstructions/tapsim_builder.py +1051 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/__init__.py +31 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/batch_cli.py +527 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/core.py +472 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/3000XHR_Leoben_21_14093_intersections.csv +193 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/3000XHR_Leoben_21_14093_reference.csv +161 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/3000XHR_Leoben_21_14093_triangles.csv +334 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/4000XHR_Erlangen_56_4833_intersections.csv +193 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/4000XHR_Erlangen_56_4833_reference.csv +161 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/4000XHR_Erlangen_56_4833_triangles.csv +334 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/5000XR_Leoben_5124_368_intersections.csv +193 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/5000XR_Leoben_5124_368_reference.csv +161 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/5000XR_Leoben_5124_368_triangles.csv +334 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/5000XR_Oxford_5083_23091_intersections.csv +193 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/5000XR_Oxford_5083_23091_reference.csv +161 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/5000XR_Oxford_5083_23091_triangles.csv +334 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/6000XR_Chalmers_6002_770_intersections.csv +193 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/6000XR_Chalmers_6002_770_reference.csv +161 -0
- pyccapt-0.2.3/pyccapt/calibration/reflectron_correction/data/presets/6000XR_Chalmers_6002_770_triangles.csv +335 -0
- pyccapt-0.2.3/pyccapt/config.toml +337 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/CONTROL.md +145 -93
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/DATA_STRUCTURE.md +77 -67
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/__init__.py +13 -13
- pyccapt-0.2.3/pyccapt/control/__main__.py +133 -0
- pyccapt-0.2.3/pyccapt/control/apt/__init__.py +1 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/apt/apt_exp_control.py +993 -715
- pyccapt-0.2.3/pyccapt/control/apt/apt_exp_control_func.py +237 -0
- pyccapt-0.2.3/pyccapt/control/apt/detector_models.py +25 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/apt/detector_runtime.py +80 -77
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/apt/experiment_state.py +228 -212
- pyccapt-0.2.3/pyccapt/control/core/__init__.py +1 -0
- pyccapt-0.2.3/pyccapt/control/core/baking_loging.py +236 -0
- pyccapt-0.2.3/pyccapt/control/core/com_ports.py +22 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/core/control_data_tool.py +296 -296
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/core/device_checks.py +247 -245
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/core/experiment_statistics.py +114 -85
- pyccapt-0.2.3/pyccapt/control/core/hdf5_creator.py +453 -0
- pyccapt-0.2.3/pyccapt/control/core/live_calibration.py +895 -0
- pyccapt-0.2.3/pyccapt/control/core/loggi.py +466 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/core/read_files.py +130 -133
- pyccapt-0.2.3/pyccapt/control/core/recover_chunks_to_hdf5.py +509 -0
- pyccapt-0.2.3/pyccapt/control/core/runtime.py +255 -0
- pyccapt-0.2.3/pyccapt/control/core/share_variables.py +632 -0
- pyccapt-0.2.3/pyccapt/control/core/shared_ring_buffer.py +216 -0
- pyccapt-0.2.3/pyccapt/control/core/tof2mc_simple.py +32 -0
- pyccapt-0.2.3/pyccapt/control/devices/__init__.py +1 -0
- pyccapt-0.2.3/pyccapt/control/devices/camera.py +830 -0
- pyccapt-0.2.3/pyccapt/control/devices/edwards_tic.py +55 -0
- pyccapt-0.2.3/pyccapt/control/devices/email_send.py +310 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/devices/initialize_devices.py +661 -521
- pyccapt-0.2.3/pyccapt/control/devices/pfeiffer_gauges.py +252 -0
- pyccapt-0.2.3/pyccapt/control/devices/signal_generator.py +145 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/drs/README.md +3 -3
- pyccapt-0.2.3/pyccapt/control/drs/__init__.py +1 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/drs/drs.py +140 -107
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/electrode.toml +17 -17
- pyccapt-0.2.3/pyccapt/control/gui/__init__.py +1 -0
- pyccapt-0.2.3/pyccapt/control/gui/gui_baking.py +516 -0
- pyccapt-0.2.3/pyccapt/control/gui/gui_cameras.py +1087 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/gui/gui_gates.py +514 -464
- pyccapt-0.2.3/pyccapt/control/gui/gui_laser_control.py +2247 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/gui/gui_main.py +2652 -1981
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/gui/gui_pumps_vacuum.py +998 -1007
- pyccapt-0.2.3/pyccapt/control/gui/gui_stage_control.py +800 -0
- pyccapt-0.2.3/pyccapt/control/gui/gui_visualization.py +1938 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/gui/main_parameters.py +318 -320
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/gui/process_coordinator.py +118 -102
- pyccapt-0.2.3/pyccapt/control/gui/tooltips.py +432 -0
- pyccapt-0.2.3/pyccapt/control/nkt_photonics/nktpbus_activate.py +49 -0
- pyccapt-0.2.3/pyccapt/control/nkt_photonics/nktpbus_switch.py +314 -0
- pyccapt-0.2.3/pyccapt/control/nkt_photonics/origamiClassCLI.py +404 -0
- pyccapt-0.2.3/pyccapt/control/smaract_mcs2/__init__.py +1 -0
- pyccapt-0.2.3/pyccapt/control/smaract_mcs2/mcs2_stage.py +436 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_roentdek/README.md +3 -3
- pyccapt-0.2.3/pyccapt/control/tdc_roentdek/__init__.py +1 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_roentdek/cobold_tool.py +204 -208
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_roentdek/global.cfg +18 -18
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_roentdek/source/global.cfg +18 -18
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_roentdek/source/lmf2txt.exe +0 -0
- pyccapt-0.2.3/pyccapt/control/tdc_roentdek/tdc_roentdek.py +205 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_surface_concept/README.md +3 -3
- pyccapt-0.2.3/pyccapt/control/tdc_surface_concept/__init__.py +1 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_surface_concept/scTDC.py +1461 -1493
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/tdc_surface_concept/tdc_gpx3.ini +168 -168
- pyccapt-0.2.3/pyccapt/control/tdc_surface_concept/tdc_surface_concept.py +619 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/thorlabs_apt/README.md +55 -55
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/thorlabs_apt/_APTAPI.py +182 -183
- {pyccapt-0.2.1/pyccapt/control/usb_switch → pyccapt-0.2.3/pyccapt/control/thorlabs_apt}/__init__.py +1 -1
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/thorlabs_apt/_error_codes.py +55 -55
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/control/thorlabs_apt/core.py +1302 -1395
- pyccapt-0.2.3/pyccapt/control/thorlabs_apt/thorlab_motor.py +41 -0
- pyccapt-0.2.3/pyccapt/control/usb_switch/__init__.py +1 -0
- pyccapt-0.2.3/pyccapt/control/usb_switch/usb_switch.py +80 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/README.md +6 -6
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_baking.ui +64 -64
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_cameras.ui +620 -620
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_gates.ui +271 -271
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_laser_control.ui +839 -920
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_laser_control_special.ui +288 -288
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_main.ui +1719 -1733
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_pumps_vacuum.ui +744 -744
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_stage_control.ui +546 -386
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt/files/PyQt6_UI/gui_visualization.ui +782 -639
- pyccapt-0.2.3/pyccapt/files/email_credentials.example.toml +48 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3/pyccapt.egg-info}/PKG-INFO +458 -354
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt.egg-info/SOURCES.txt +57 -1
- {pyccapt-0.2.1 → pyccapt-0.2.3}/pyccapt.egg-info/requires.txt +6 -0
- pyccapt-0.2.3/pyproject.toml +42 -0
- {pyccapt-0.2.1 → pyccapt-0.2.3}/setup.cfg +4 -4
- {pyccapt-0.2.1 → pyccapt-0.2.3}/setup.py +160 -146
- pyccapt-0.2.1/CHANGELOG.txt +0 -8
- pyccapt-0.2.1/README.md +0 -221
- pyccapt-0.2.1/pyccapt/__init__.py +0 -3
- pyccapt-0.2.1/pyccapt/calibration/__init__.py +0 -13
- pyccapt-0.2.1/pyccapt/calibration/clustering/__init__.py +0 -17
- pyccapt-0.2.1/pyccapt/calibration/clustering/clustering.py +0 -220
- pyccapt-0.2.1/pyccapt/calibration/core/calibration.py +0 -838
- pyccapt-0.2.1/pyccapt/calibration/core/correction_models.py +0 -87
- pyccapt-0.2.1/pyccapt/calibration/core/mc_plot_background_helpers.py +0 -176
- pyccapt-0.2.1/pyccapt/calibration/core/mc_plot_peak_helpers.py +0 -242
- pyccapt-0.2.1/pyccapt/calibration/core/share_variables.py +0 -235
- pyccapt-0.2.1/pyccapt/calibration/data_tools/ato_tools.py +0 -168
- pyccapt-0.2.1/pyccapt/calibration/data_tools/data_tools.py +0 -283
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Change Log
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==========
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0.2.2 (04.05.2026)
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- Add GitHub Actions CI: tests (matrix on Linux/Windows × Py 3.10/3.11/3.12),
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ruff lint, Sphinx docs build, GHCR Docker image, tag-driven PyPI release.
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- Document the tag-driven release runbook in CONTRIBUTING.md, including PyPI
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Trusted Publishing setup and recovery from failed releases.
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- Fix `store_df_to_hdf` calling `DataFrame.to_hdf` with a positional `key`
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on modern pandas (TypeError: takes 2 positional arguments but 3 given).
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- Make `_build_peak_template` skip-not-fail when a peak window has fewer
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than 25 ions, aligning the threshold with `_split_reference_peaks` so
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adaptive residual calibration degrades gracefully on sparse peaks.
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- Mock optional control-extra deps (PyQt6, pyqtgraph, pyserial, opencv,
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pyvisa) in docs/conf.py so the docs build runs in the calibration-only
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CI environment.
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Read the Docs link badge.
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- Loosen the synthetic-fixture spread tolerance in
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test_adaptive_residual_calibration_reduces_windowed_peak_drift to 2x to
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match the metric's noise floor on small datasets.
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- First Release
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