pybiolib 1.2.980__tar.gz → 1.2.983__tar.gz
This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
- {pybiolib-1.2.980 → pybiolib-1.2.983}/PKG-INFO +1 -1
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/utils/multinode.py +6 -9
- {pybiolib-1.2.980 → pybiolib-1.2.983}/pyproject.toml +1 -1
- {pybiolib-1.2.980 → pybiolib-1.2.983}/LICENSE +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/PYPI_README.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_data_record/data_record.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/add_copilot_prompts.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/data_record/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/data_record/data_record.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/data_record/push_data.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/errors.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/file_utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/fuse_mount/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/http_client.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/lfs/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/lfs/cache.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/libs/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/libs/fusepy/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/instructions/general-app-knowledge.instructions.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/instructions/style-general.instructions.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/instructions/style-python.instructions.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/instructions/style-react-ts.instructions.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/prompts/biolib_app_inputs.prompt.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/prompts/biolib_onboard_repo.prompt.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/.github/prompts/biolib_run_apps.prompt.md +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/llm_instructions/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/push_application.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/runtime.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/string_utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/.biolib/config.yml +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/.github/workflows/biolib.yml +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/.gitignore +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/Dockerfile +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/requirements.txt +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/run.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/init_template/run.sh +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/templates/templates.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/tree_utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/account.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/account_member.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/app.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/data_record.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/experiment.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/file_node.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/push.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/resource.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/resource_permission.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/resource_version.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/result.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/typing.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/types/user.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_internal/utils/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_runtime/runtime.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/_session/session.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/api/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/api/client.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/app/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/app/app.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/app/search_apps.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/api_client.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/app_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/auth.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/biolib_app_api.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/biolib_job_api.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/common_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/job_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/lfs_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_api_client/user_state.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/file_in_container.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/module_input.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/module_output_v2.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/saved_job.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/system_exception.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/system_status_update.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_binary_format/utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_docker_client/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_download_container.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_errors.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/biolib_logging.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/auth.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/data_record.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/download_container.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/init.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/lfs.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/push.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/run.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/runtime.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/sdk.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/cli/start.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/.gitignore +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/cloud_utils/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/cache_state.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/cache_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/executors/types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/job_storage.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/job_worker.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/large_file_system.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/mappings.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/job_worker/utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/remote_host_proxy.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/socker_listener_thread.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/socket_sender_thread.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/webserver/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/webserver/webserver.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/webserver/webserver_types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/webserver/webserver_utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/compute_node/webserver/worker_thread.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/experiments/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/experiments/experiment.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/jobs/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/jobs/job.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/jobs/job_result.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/jobs/types.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/py.typed +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/runtime/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/sdk/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/tables.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/typing_utils.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/user/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/user/sign_in.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/utils/__init__.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/utils/app_uri.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/utils/cache_state.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/utils/multipart_uploader.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/utils/seq_util.py +0 -0
- {pybiolib-1.2.980 → pybiolib-1.2.983}/biolib/utils/zip/remote_zip.py +0 -0
@@ -86,25 +86,22 @@ def fasta_batch_records(records, work_per_batch_min, work_per_residue=1, verbose
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sequence_work_units = len(seq) * work_per_residue
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current_work_units = current_longest_seq_len * work_per_residue * len(batch)
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