pybiolib 1.2.744__tar.gz → 1.2.760__tar.gz

{pybiolib-1.2.744 → pybiolib-1.2.760}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.744
+Version: 1.2.760
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.744 → pybiolib-1.2.760}/biolib/_runtime/runtime.py

@@ -78,16 +78,18 @@ class Runtime:
         Set BioLib result name to FASTA file name (excluding file extension) or,
         if detecting a BioLib generated name, use ID of the first sequence in the fasta file
         """
-
-        # Set job name to first header if FASTA text input (random BioLib file) detected
-        if re.match('^input_[A-Za-z0-9]+.*', path_to_fasta):
-            first_id = next(SeqUtil.parse_fasta(path_to_fasta)).id
-            result_name = first_id.replace(' ', '_')[:60]
-        else:
-            result_name = Path(path_to_fasta).stem
-
-        logger.debug(f'Setting result name to "{result_name}" from {path_to_fasta}')
-        Runtime.set_result_name_prefix(result_name)
+        try:
+            # Set job name to first header if FASTA text input (random BioLib file) detected
+            if re.match('^input_[A-Za-z0-9]+.*', path_to_fasta):
+                first_id = next(SeqUtil.parse_fasta(path_to_fasta)).id
+                result_name = first_id.replace(' ', '_')[:60]
+            else:
+                result_name = Path(path_to_fasta).stem
+
+            logger.debug(f'Setting result name to "{result_name}" from {path_to_fasta}')
+            Runtime.set_result_name_prefix(result_name)
+        except Exception as e:
+            logger.warning(f'Failed to set result name from fasta file {path_to_fasta}: {str(e)}')
 
     @staticmethod
     def create_result_note(note: str) -> None:

{pybiolib-1.2.744 → pybiolib-1.2.760}/biolib/experiments/experiment.py

@@ -197,6 +197,25 @@ class Experiment:
 
         return jobs
 
+    def get_results(self, status: Optional[str] = None) -> List[Job]:
+        r"""Get a list of results in this experiment, optionally filtered by status.
+
+        Args:
+            status (str, optional): Filter results by status. One of:
+                'in_progress', 'completed', 'failed', 'cancelled'
+
+        Returns:
+            List[Job]: List of result objects in this experiment
+
+        Example::
+
+            >>> # Get all results in the experiment
+            >>> results = experiment.get_results()
+            >>> # Get only completed results
+            >>> completed_results = experiment.get_results(status='completed')
+        """
+        return self.get_jobs(status=status)
+
     def rename(self, destination: str) -> None:
         api.client.patch(f'/resources/{self.uuid}/', data={'uri': destination})
         self._refetch()

{pybiolib-1.2.744 → pybiolib-1.2.760}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.744"
+version = "1.2.760"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"