pybiolib 1.2.720__tar.gz → 1.2.740__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (137) hide show
  1. {pybiolib-1.2.720 → pybiolib-1.2.740}/PKG-INFO +1 -1
  2. pybiolib-1.2.740/biolib/_internal/types/experiment.py +30 -0
  3. pybiolib-1.2.740/biolib/_internal/types/result.py +10 -0
  4. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_session/session.py +2 -1
  5. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/api/client.py +4 -0
  6. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/sdk/__init__.py +2 -2
  7. {pybiolib-1.2.720 → pybiolib-1.2.740}/pyproject.toml +1 -1
  8. pybiolib-1.2.720/biolib/_internal/types/experiment.py +0 -10
  9. {pybiolib-1.2.720 → pybiolib-1.2.740}/LICENSE +0 -0
  10. {pybiolib-1.2.720 → pybiolib-1.2.740}/PYPI_README.md +0 -0
  11. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/__init__.py +0 -0
  12. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_data_record/data_record.py +0 -0
  13. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/__init__.py +0 -0
  14. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/add_copilot_prompts.py +0 -0
  15. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/data_record/__init__.py +0 -0
  16. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/data_record/data_record.py +0 -0
  17. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/data_record/push_data.py +0 -0
  18. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
  19. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/file_utils.py +0 -0
  20. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/fuse_mount/__init__.py +0 -0
  21. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
  22. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/http_client.py +0 -0
  23. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/lfs/__init__.py +0 -0
  24. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/lfs/cache.py +0 -0
  25. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/libs/__init__.py +0 -0
  26. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/libs/fusepy/__init__.py +0 -0
  27. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/llm_instructions/.github/code-style.md +0 -0
  28. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/llm_instructions/.github/copilot-instructions.md +0 -0
  29. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/llm_instructions/.github/prompts/biolib_app_inputs.prompt.md +0 -0
  30. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/llm_instructions/.github/prompts/biolib_run_apps.prompt.md +0 -0
  31. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/llm_instructions/__init__.py +0 -0
  32. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/push_application.py +0 -0
  33. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/runtime.py +0 -0
  34. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/tree_utils.py +0 -0
  35. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/__init__.py +0 -0
  36. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/app.py +0 -0
  37. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/data_record.py +0 -0
  38. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/file_node.py +0 -0
  39. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/resource.py +0 -0
  40. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/resource_permission.py +0 -0
  41. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/resource_version.py +0 -0
  42. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/types/typing.py +0 -0
  43. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/utils/__init__.py +0 -0
  44. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_internal/utils/multinode.py +0 -0
  45. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/_runtime/runtime.py +0 -0
  46. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/api/__init__.py +0 -0
  47. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/app/__init__.py +0 -0
  48. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/app/app.py +0 -0
  49. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/app/search_apps.py +0 -0
  50. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/__init__.py +0 -0
  51. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/api_client.py +0 -0
  52. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/app_types.py +0 -0
  53. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/auth.py +0 -0
  54. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  55. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  56. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/common_types.py +0 -0
  57. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/job_types.py +0 -0
  58. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/lfs_types.py +0 -0
  59. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_api_client/user_state.py +0 -0
  60. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/__init__.py +0 -0
  61. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  62. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/file_in_container.py +0 -0
  63. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/module_input.py +0 -0
  64. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  65. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  66. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  67. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/saved_job.py +0 -0
  68. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  69. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/system_exception.py +0 -0
  70. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/system_status_update.py +0 -0
  71. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_binary_format/utils.py +0 -0
  72. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_docker_client/__init__.py +0 -0
  73. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_download_container.py +0 -0
  74. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_errors.py +0 -0
  75. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/biolib_logging.py +0 -0
  76. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/__init__.py +0 -0
  77. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/auth.py +0 -0
  78. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/data_record.py +0 -0
  79. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/download_container.py +0 -0
  80. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/init.py +0 -0
  81. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/lfs.py +0 -0
  82. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/push.py +0 -0
  83. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/run.py +0 -0
  84. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/runtime.py +0 -0
  85. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/sdk.py +0 -0
  86. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/cli/start.py +0 -0
  87. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/.gitignore +0 -0
  88. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/__init__.py +0 -0
  89. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  90. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  91. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/__init__.py +0 -0
  92. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/cache_state.py +0 -0
  93. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/cache_types.py +0 -0
  94. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  95. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  96. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  97. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  98. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  99. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/executors/types.py +0 -0
  100. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  101. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  102. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/job_storage.py +0 -0
  103. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/job_worker.py +0 -0
  104. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  105. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/mappings.py +0 -0
  106. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  107. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/job_worker/utils.py +0 -0
  108. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/remote_host_proxy.py +0 -0
  109. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/socker_listener_thread.py +0 -0
  110. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/socket_sender_thread.py +0 -0
  111. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/utils.py +0 -0
  112. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/webserver/__init__.py +0 -0
  113. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  114. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/webserver/webserver.py +0 -0
  115. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/webserver/webserver_types.py +0 -0
  116. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  117. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/compute_node/webserver/worker_thread.py +0 -0
  118. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/experiments/__init__.py +0 -0
  119. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/experiments/experiment.py +0 -0
  120. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/jobs/__init__.py +0 -0
  121. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/jobs/job.py +0 -0
  122. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/jobs/job_result.py +0 -0
  123. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/jobs/types.py +0 -0
  124. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/py.typed +0 -0
  125. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/runtime/__init__.py +0 -0
  126. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/tables.py +0 -0
  127. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/templates/__init__.py +0 -0
  128. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/templates/example_app.py +0 -0
  129. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/typing_utils.py +0 -0
  130. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/user/__init__.py +0 -0
  131. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/user/sign_in.py +0 -0
  132. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/utils/__init__.py +0 -0
  133. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/utils/app_uri.py +0 -0
  134. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/utils/cache_state.py +0 -0
  135. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/utils/multipart_uploader.py +0 -0
  136. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/utils/seq_util.py +0 -0
  137. {pybiolib-1.2.720 → pybiolib-1.2.740}/biolib/utils/zip/remote_zip.py +0 -0
@@ -1,6 +1,6 @@
1
1
  Metadata-Version: 2.3
2
2
  Name: pybiolib
3
- Version: 1.2.720
3
+ Version: 1.2.740
4
4
  Summary: BioLib Python Client
5
5
  License: MIT
6
6
  Keywords: biolib
@@ -0,0 +1,30 @@
1
+ from .result import ResultDict
2
+ from .typing import Optional, TypedDict
3
+
4
+
5
+ class ResultCounts(TypedDict):
6
+ cancelled: int
7
+ completed: int
8
+ failed: int
9
+ in_progress: int
10
+ queued: int
11
+ total: int
12
+
13
+
14
+ class ExperimentDict(TypedDict):
15
+ uuid: Optional[str]
16
+ name: Optional[str]
17
+ finished_at: Optional[str]
18
+ first_created_at: Optional[str]
19
+ last_created_at: Optional[str]
20
+ last_created_result: Optional[ResultDict]
21
+ result_counts: ResultCounts
22
+
23
+
24
+ class ExperimentSlimDict(TypedDict):
25
+ job_count: int
26
+ job_running_count: int
27
+
28
+
29
+ class ExperimentDetailedDict(ExperimentSlimDict):
30
+ pass
@@ -0,0 +1,10 @@
1
+ from .typing import Optional, TypedDict
2
+
3
+
4
+ class ResultDict(TypedDict):
5
+ uuid: str
6
+ name: str
7
+ app_uri: str
8
+ created_at: str
9
+ state: str
10
+ finished_at: Optional[str]
@@ -9,11 +9,12 @@ class Session:
9
9
  self._api = ApiClient(_init_dict=_init_dict)
10
10
 
11
11
  @staticmethod
12
- def get_session(refresh_token: str, base_url: Optional[str] = None) -> 'Session':
12
+ def get_session(refresh_token: str, base_url: Optional[str] = None, client_type: Optional[str] = None) -> 'Session':
13
13
  return Session(
14
14
  _init_dict=ApiClientInitDict(
15
15
  refresh_token=refresh_token,
16
16
  base_url=base_url or utils.load_base_url_from_env(),
17
+ client_type=client_type,
17
18
  )
18
19
  )
19
20
 
@@ -30,6 +30,7 @@ def _get_biolib_package_version() -> str:
30
30
  class ApiClientInitDict(TypedDict):
31
31
  refresh_token: str
32
32
  base_url: str
33
+ client_type: Optional[str]
33
34
 
34
35
 
35
36
  class JwtDecodeError(Exception):
@@ -43,6 +44,7 @@ class ApiClient(HttpClient):
43
44
  self._access_token: Optional[str] = None
44
45
  self._refresh_token: Optional[str] = _init_dict['refresh_token'] if _init_dict else None
45
46
  self._base_url: Optional[str] = _init_dict['base_url'] if _init_dict else None
47
+ self._client_type: Optional[str] = _init_dict['client_type'] if _init_dict else None
46
48
 
47
49
  def get(
48
50
  self,
@@ -128,6 +130,8 @@ class ApiClient(HttpClient):
128
130
 
129
131
  headers['client-type'] = 'biolib-python'
130
132
  headers['client-version'] = ApiClient._biolib_package_version
133
+ if self._client_type:
134
+ headers['client-opt-type'] = self._client_type
131
135
 
132
136
  return headers
133
137
 
@@ -12,8 +12,8 @@ from biolib.app import BioLibApp as _BioLibApp
12
12
  Runtime = _Runtime
13
13
 
14
14
 
15
- def get_session(refresh_token: str, base_url: Optional[str] = None) -> _Session:
16
- return _Session.get_session(refresh_token=refresh_token, base_url=base_url)
15
+ def get_session(refresh_token: str, base_url: Optional[str] = None, client_type: Optional[str] = None) -> _Session:
16
+ return _Session.get_session(refresh_token=refresh_token, base_url=base_url, client_type=client_type)
17
17
 
18
18
 
19
19
  def push_app_version(uri: str, path: str) -> _BioLibApp:
@@ -1,6 +1,6 @@
1
1
  [tool.poetry]
2
2
  name = "pybiolib"
3
- version = "1.2.720"
3
+ version = "1.2.740"
4
4
  description = "BioLib Python Client"
5
5
  readme = "PYPI_README.md"
6
6
  license = "MIT"
@@ -1,10 +0,0 @@
1
- from .typing import TypedDict
2
-
3
-
4
- class ExperimentSlimDict(TypedDict):
5
- job_count: int
6
- job_running_count: int
7
-
8
-
9
- class ExperimentDetailedDict(ExperimentSlimDict):
10
- pass
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