pybiolib 1.2.582__tar.gz → 1.2.600__tar.gz

{pybiolib-1.2.582 → pybiolib-1.2.600}/PKG-INFO

@@ -1,6 +1,6 @@
 Metadata-Version: 2.3
 Name: pybiolib
-Version: 1.2.582
+Version: 1.2.600
 Summary: BioLib Python Client
 License: MIT
 Keywords: biolib

{pybiolib-1.2.582 → pybiolib-1.2.600}/biolib/_internal/push_application.py

@@ -17,6 +17,7 @@ from biolib.biolib_docker_client import BiolibDockerClient
 from biolib.biolib_errors import BioLibError
 from biolib.biolib_logging import logger
 from biolib.typing_utils import Iterable, Optional, Set, TypedDict
+from biolib.utils.app_uri import parse_app_uri
 
 REGEX_MARKDOWN_INLINE_IMAGE = re.compile(r'!\[(?P<alt>.*)\]\((?P<src>.*)\)')
 
@@ -79,22 +80,24 @@ def push_application(
     set_as_active: bool,
     set_as_published: bool,
 ):
-    app_uri_parts = app_uri.split(':')
-    if len(app_uri_parts) > 2:
-        raise BioLibError('Invalid URI only a single colon allowed')
+    parsed_uri = parse_app_uri(app_uri)
+    app_name = parsed_uri['app_name']
 
-    app_uri_to_fetch = app_uri_parts[0]
-    semantic_version = app_uri_parts[1] if len(app_uri_parts) == 2 else None
+    app_uri_to_fetch = f"@{parsed_uri['resource_name_prefix']}/{parsed_uri['account_handle_normalized']}/{app_name}"
+
+    version = parsed_uri['version']
+    semantic_version = f"{version['major']}.{version['minor']}.{version['patch']}" if version else None
 
     app_path_absolute = Path(app_path).resolve()
 
     api_client = BiolibApiClient.get()
     if not api_client.is_signed_in:
         # TODO: Create an exception class for expected errors like this that does not print stacktrace
+
         raise Exception(
             'You must be authenticated to push an application.\n'
-            'Please set the environment variable "BIOLIB_TOKEN=[your_api_token]"\n'
-            f'You can get an API token at: {api_client.base_url}/settings/api-tokens/'
+            'Please set the environment variable "BIOLIB_TOKEN=[your_deploy_token]"\n'
+            f'You can get a deploy key at: {api_client.base_url}/{app_uri_to_fetch}/settings/keys'
         ) from None
 
     # prepare zip file

{pybiolib-1.2.582 → pybiolib-1.2.600}/biolib/jobs/job.py

@@ -91,6 +91,24 @@ class Job:
         self._refetch_job_dict()
         return bool(self._job_dict['ended_at'])
 
+    def is_pending(self) -> bool:
+        """Returns whether the job is in a pending state.
+
+        A job is considered pending if it's not finished yet.
+        The job state is re-fetched when this method is called.
+
+        Returns:
+            bool: True if the job is in a pending state, False otherwise.
+
+        Example::
+            >>> job = biolib.get_job("job_id")
+            >>> if job.is_pending():
+            >>>     print("Job is still running")
+            >>> else:
+            >>>     print("Job has finished")
+        """
+        return not self.is_finished()
+
     def get_name(self) -> str:
         self._refetch_job_dict()
         return self._job_dict['main_result']['name']

{pybiolib-1.2.582 → pybiolib-1.2.600}/pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "pybiolib"
-version = "1.2.582"
+version = "1.2.600"
 description = "BioLib Python Client"
 readme = "PYPI_README.md"
 license = "MIT"