pybiolib 1.2.520__tar.gz → 1.2.558__tar.gz

This diff represents the content of publicly available package versions that have been released to one of the supported registries. The information contained in this diff is provided for informational purposes only and reflects changes between package versions as they appear in their respective public registries.
Files changed (126) hide show
  1. {pybiolib-1.2.520 → pybiolib-1.2.558}/PKG-INFO +2 -2
  2. pybiolib-1.2.558/biolib/_internal/types/resource_version.py +13 -0
  3. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/typing.py +3 -0
  4. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/app/app.py +1 -1
  5. {pybiolib-1.2.520 → pybiolib-1.2.558}/pyproject.toml +2 -2
  6. pybiolib-1.2.520/biolib/_internal/types/resource_version.py +0 -7
  7. {pybiolib-1.2.520 → pybiolib-1.2.558}/LICENSE +0 -0
  8. {pybiolib-1.2.520 → pybiolib-1.2.558}/PYPI_README.md +0 -0
  9. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/__init__.py +0 -0
  10. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_data_record/data_record.py +0 -0
  11. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/__init__.py +0 -0
  12. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/data_record/__init__.py +0 -0
  13. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/data_record/data_record.py +0 -0
  14. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/data_record/push_data.py +0 -0
  15. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/data_record/remote_storage_endpoint.py +0 -0
  16. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/file_utils.py +0 -0
  17. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/fuse_mount/__init__.py +0 -0
  18. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/fuse_mount/experiment_fuse_mount.py +0 -0
  19. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/http_client.py +0 -0
  20. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/lfs/__init__.py +0 -0
  21. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/lfs/cache.py +0 -0
  22. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/libs/__init__.py +0 -0
  23. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/libs/fusepy/__init__.py +0 -0
  24. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/push_application.py +0 -0
  25. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/runtime.py +0 -0
  26. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/__init__.py +0 -0
  27. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/app.py +0 -0
  28. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/data_record.py +0 -0
  29. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/experiment.py +0 -0
  30. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/file_node.py +0 -0
  31. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/resource.py +0 -0
  32. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/utils/__init__.py +0 -0
  33. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/utils/multinode.py +0 -0
  34. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_runtime/runtime.py +0 -0
  35. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/api/__init__.py +0 -0
  36. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/api/client.py +0 -0
  37. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/app/__init__.py +0 -0
  38. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/app/search_apps.py +0 -0
  39. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/__init__.py +0 -0
  40. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/api_client.py +0 -0
  41. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/app_types.py +0 -0
  42. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/auth.py +0 -0
  43. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/biolib_app_api.py +0 -0
  44. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/biolib_job_api.py +0 -0
  45. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/common_types.py +0 -0
  46. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/job_types.py +0 -0
  47. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/lfs_types.py +0 -0
  48. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_api_client/user_state.py +0 -0
  49. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/__init__.py +0 -0
  50. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/base_bbf_package.py +0 -0
  51. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/file_in_container.py +0 -0
  52. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/module_input.py +0 -0
  53. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/module_output_v2.py +0 -0
  54. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/remote_endpoints.py +0 -0
  55. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/remote_stream_seeker.py +0 -0
  56. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/saved_job.py +0 -0
  57. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/stdout_and_stderr.py +0 -0
  58. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/system_exception.py +0 -0
  59. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/system_status_update.py +0 -0
  60. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_binary_format/utils.py +0 -0
  61. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_docker_client/__init__.py +0 -0
  62. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_download_container.py +0 -0
  63. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_errors.py +0 -0
  64. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/biolib_logging.py +0 -0
  65. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/__init__.py +0 -0
  66. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/auth.py +0 -0
  67. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/data_record.py +0 -0
  68. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/download_container.py +0 -0
  69. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/init.py +0 -0
  70. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/lfs.py +0 -0
  71. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/push.py +0 -0
  72. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/run.py +0 -0
  73. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/runtime.py +0 -0
  74. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/start.py +0 -0
  75. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/.gitignore +0 -0
  76. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/__init__.py +0 -0
  77. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/cloud_utils/__init__.py +0 -0
  78. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/cloud_utils/cloud_utils.py +0 -0
  79. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/__init__.py +0 -0
  80. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/cache_state.py +0 -0
  81. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/cache_types.py +0 -0
  82. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/docker_image_cache.py +0 -0
  83. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/executors/__init__.py +0 -0
  84. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/executors/docker_executor.py +0 -0
  85. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/executors/docker_types.py +0 -0
  86. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/executors/tars/__init__.py +0 -0
  87. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/executors/types.py +0 -0
  88. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/job_legacy_input_wait_timeout_thread.py +0 -0
  89. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/job_max_runtime_timer_thread.py +0 -0
  90. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/job_storage.py +0 -0
  91. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/job_worker.py +0 -0
  92. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/large_file_system.py +0 -0
  93. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/mappings.py +0 -0
  94. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/utilization_reporter_thread.py +0 -0
  95. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/job_worker/utils.py +0 -0
  96. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/remote_host_proxy.py +0 -0
  97. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/socker_listener_thread.py +0 -0
  98. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/socket_sender_thread.py +0 -0
  99. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/utils.py +0 -0
  100. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/webserver/__init__.py +0 -0
  101. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/webserver/gunicorn_flask_application.py +0 -0
  102. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/webserver/webserver.py +0 -0
  103. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/webserver/webserver_types.py +0 -0
  104. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/webserver/webserver_utils.py +0 -0
  105. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/compute_node/webserver/worker_thread.py +0 -0
  106. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/experiments/__init__.py +0 -0
  107. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/experiments/experiment.py +0 -0
  108. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/jobs/__init__.py +0 -0
  109. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/jobs/job.py +0 -0
  110. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/jobs/job_result.py +0 -0
  111. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/jobs/types.py +0 -0
  112. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/py.typed +0 -0
  113. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/runtime/__init__.py +0 -0
  114. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/sdk/__init__.py +0 -0
  115. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/tables.py +0 -0
  116. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/templates/__init__.py +0 -0
  117. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/templates/example_app.py +0 -0
  118. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/typing_utils.py +0 -0
  119. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/user/__init__.py +0 -0
  120. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/user/sign_in.py +0 -0
  121. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/utils/__init__.py +0 -0
  122. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/utils/app_uri.py +0 -0
  123. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/utils/cache_state.py +0 -0
  124. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/utils/multipart_uploader.py +0 -0
  125. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/utils/seq_util.py +0 -0
  126. {pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/utils/zip/remote_zip.py +0 -0
{pybiolib-1.2.520 → pybiolib-1.2.558}/PKG-INFO RENAMED
@@ -1,6 +1,6 @@
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  Metadata-Version: 2.3
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  Name: pybiolib
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- Version: 1.2.520
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+ Version: 1.2.558
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  Summary: BioLib Python Client
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  License: MIT
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  Keywords: biolib
@@ -26,7 +26,7 @@ Requires-Dist: gunicorn (>=20.1.0) ; extra == "compute-node"
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  Requires-Dist: importlib-metadata (>=1.6.1)
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  Requires-Dist: pyyaml (>=5.3.1)
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  Requires-Dist: rich (>=12.4.4)
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- Requires-Dist: typing_extensions (>=3.10.0) ; python_version < "3.8"
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+ Requires-Dist: typing-extensions (>=4.1.0) ; python_version < "3.11"
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  Project-URL: Homepage, https://github.com/biolib
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  Description-Content-Type: text/markdown
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pybiolib-1.2.558/biolib/_internal/types/resource_version.py ADDED
@@ -0,0 +1,13 @@
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+ from .typing import Literal, NotRequired, TypedDict
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+
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+
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+ class ResourceVersionDict(TypedDict):
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+ uuid: str
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+ semantic_version: str
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+ state: Literal['published', 'unpublished']
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+ created_at: str
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+ git_branch_name: NotRequired[str]
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+
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+
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+ class ResourceVersionDetailedDict(ResourceVersionDict):
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+ pass
{pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/_internal/types/typing.py RENAMED
@@ -5,3 +5,6 @@ from typing import * # noqa:F403 pylint: disable=wildcard-import, unused-wildca
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  if sys.version_info < (3, 8): # noqa: UP036
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  from typing_extensions import Literal, TypedDict # pylint: disable=unused-import
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+
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+ if sys.version_info < (3, 11): # noqa: UP036
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+ from typing_extensions import NotRequired # pylint: disable=unused-import
{pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/app/app.py RENAMED
@@ -108,7 +108,7 @@ class BioLibApp:
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  (utils.STREAM_STDOUT or stream_logs)
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  and (self._app_version.get('main_output_file') or self._app_version.get('stdout_render_type') == 'text')
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  )
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- job._stream_logs(enable_print=enable_print) # pylint: disable=protected-access
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+ job._stream_logs(enable_print=enable_print) # pylint: disable=protected-access
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  if check:
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  exit_code = job.get_exit_code()
{pybiolib-1.2.520 → pybiolib-1.2.558}/pyproject.toml RENAMED
@@ -1,6 +1,6 @@
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  [tool.poetry]
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  name = "pybiolib"
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- version = "1.2.520"
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+ version = "1.2.558"
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  description = "BioLib Python Client"
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  readme = "PYPI_README.md"
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  license = "MIT"
@@ -32,7 +32,7 @@ importlib-metadata = ">=1.6.1"
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  python = "^3.6.3"
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  pyyaml = ">=5.3.1"
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  rich = ">=12.4.4"
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- typing_extensions = { version = ">=3.10.0", python = "<3.8" }
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+ typing-extensions = { version = ">=4.1.0", python = "<3.11" }
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  # Optional dependencies included in the below `extras`
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  flask = { version = ">=2.0.1", optional = true }
pybiolib-1.2.520/biolib/_internal/types/resource_version.py DELETED
@@ -1,7 +0,0 @@
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- from .typing import Literal, TypedDict
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-
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-
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- class ResourceVersionDetailedDict(TypedDict):
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- semantic_version: str
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- state: Literal['published', 'unpublished']
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- uuid: str
{pybiolib-1.2.520 → pybiolib-1.2.558}/LICENSE RENAMED
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{pybiolib-1.2.520 → pybiolib-1.2.558}/PYPI_README.md RENAMED
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{pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/lfs.py RENAMED
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{pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/cli/run.py RENAMED
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{pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/py.typed RENAMED
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{pybiolib-1.2.520 → pybiolib-1.2.558}/biolib/tables.py RENAMED
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